Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21] 9,688 sequences; 362,063,720 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq6 239 8e-58 >seq6 Length=30401905 Score = 239 bits (264), Expect = 8e-58 Identities = 579/868 (67%), Gaps = 29/868 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| || || | ||||| |||||||| ||||| |||| || |||||| ||| Sbjct 1929384 CTGGTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTC 1929443 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC--CGTGTCAGGCCCATCTGTTCCAGC 47956 ||| || ||| ||||||| ||| |||| | | || || || | | ||| Sbjct 1929444 CATCCAGTCGAACGGGTTGGCGACGTTGTACATCTTCTTG-CAC-CCGAGCGCCATGAGC 1929501 Query 47957 AGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG 48016 || | || |||||| |||||||||| | |||||| | |||||| || | ||| Sbjct 1929502 AGCCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGCTCGCCGTTCATCCCGACGAGC 1929561 Query 48017 GACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 | ||||| | || | || |||||| |||| || | |||||| || | || ||| Sbjct 1929562 GCGACGGGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCGTCGGCGACGATC 1929621 Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCA 48136 | || ||||| | ||| | | ||| ||| ||| | | | ||||| | |||||| Sbjct 1929622 TCCTGGACGCGTGCCTCGTCGAGCTTGCCGCGGAGGAGGTCG---TAGAGGAGGCAGGCG 1929678 Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196 ||||| | ||| | ||| ||||| ||| ||||||| ||||||||||| ||| || ||| Sbjct 1929679 AAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGC 1929738 Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCC 48256 |||| || | || ||||||||||| || || ||| ||||| ||||||||||| ||| Sbjct 1929739 ATGAGTCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATCCCC 1929798 Query 48257 TCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC-TTGTCTGAGATCCA 48315 || || ||||| ||| ||||| ||| | |||||| || | | |||||| Sbjct 1929799 TCGACGCAGGCGAAGGCGACGAGCCGCTCGGC----GAAGCGCTCGCCGCCGTCGATCCA 1929854 Query 48316 GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGC----ATCGTCTCTATGGCCCGGA 48371 | |||||||| ||||| | ||| ||| | || || ||||| |||| Sbjct 1929855 TCGCATGGCCCAGTCGGCCTT----GCGGCGCACGGCGGGGACGGTGTCGATGGCGCGGA 1929910 Query 48372 AGA---GCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACA 48428 ||| | | ||| ||| | |||| | || || ||||||| | ||||| Sbjct 1929911 AGAGGCGGTCCTT---CTCGACGTCGTCGCGGATGTACGTCTCGAGCAGCAGCGAGTACA 1929967 Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488 |||| ||||| | ||||| || ||||||||||||||||||||||| | ||||| | Sbjct 1929968 TCTCCGAGTGGATGTTCTCGATGGCGATCTGGAACCCGTAGAAGGCGCGCGCCTCGGCGA 1930027 Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAG 48548 ||||||| || | ||| || || ||||| || || ||||| || || | Sbjct 1930028 CCTGCACGTCGGACATGAACCTGGAGGCGAGGTTCTCGAGCACGATGCCATCGGAGGCCG 1930087 Query 48549 CAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAG---AGCATTCC 48605 | |||||||| || || || | ||| |||||||||| | | | || || | || Sbjct 1930088 CGAAGAAGGCGAGCACGTGGGAGACGAAGTGGCGCTCGTCGGGCGACAGCGCGGCGTCCC 1930147 Query 48606 AGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTT 48665 || | |||| | |||||||| || ||| | |||||||| ||||| | || | Sbjct 1930148 AGTGGCGCGCGTCGGCGGAGAGGTCCACCTCCTCCGCCGTCCAGAACGACGCCACCGCCT 1930207 Query 48666 TTTTGTACATGCCCCATATGTCCGGATA 48693 | ||||| | |||| || | ||| || Sbjct 1930208 TCTTGTAGAACTCCCAGATCTGCGGGTA 1930235 Score = 239 bits (264), Expect = 8e-58 Identities = 457/667 (69%), Gaps = 20/667 (3%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| || || | ||||| |||||||| ||||| |||| || |||||| ||| Sbjct 11443139 CTGGTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTC 11443080 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC--CGTGTCAGGCCCATCTGTTCCAGC 47956 ||| || ||||||||||| ||| |||| | | || ||| || | | || Sbjct 11443079 CATCCAGTCGAAGGGGTTGGCGACGTTGTACATCTTCTTG-CAG-CCGAGCGCCATGAGG 11443022 Query 47957 AGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG 48016 ||| | || |||||| |||||||||| | ||||||| | ||||||||| | ||| Sbjct 11443021 AGGCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGC 11442962 Query 48017 GACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 | ||||| | || | || |||||| |||| || | ||||| || | || ||| Sbjct 11442961 GCGACGGGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCGACGGCGTCGGCGACGATC 11442902 Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCA 48136 | ||||| | ||| | | ||| ||| ||| | | | ||||| | |||||| Sbjct 11442901 TCGCGGACGCGCGCCTCGTCGAGCTTGCCGCGGAGGAGGTCG---TAGAGGAGGCAGGCG 11442845 Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196 ||||| | ||||| ||| ||||| ||| ||||||| ||||||||||| ||| || ||| Sbjct 11442844 AAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGC 11442785 Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCC 48256 |||| ||||| || ||||||||||| || || ||| ||||| ||||||||||| ||| Sbjct 11442784 ATGAGCCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATCCCC 11442725 Query 48257 TCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC-TTGTCTGAGATCCA 48315 || || ||||| ||| ||| | ||| | |||||| || | | |||||| Sbjct 11442724 TCGACGCAGGCGAAGGCGACGAGGCGCTCGGC----GAAGCGCTCGCCGCCGTCGATCCA 11442669 Query 48316 GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGC----ATCGTCTCTATGGCCCGGA 48371 | | |||||||| ||||| | ||| ||| | || || ||||| |||| Sbjct 11442668 GCGCATGGCCCAGTCGGCCTT----GCGGCGCACGGCCGGGACGGTGTCGATGGCGCGGA 11442613 Query 48372 AGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCT 48431 | ||| | | ||| | |||| | ||||| ||||||| | |||||||| Sbjct 11442612 ACAGCCTGTCCTTCTCGGCGCCGTCGCGGATGTAGGTCTCGAGCAGCAGCGAGTACATCT 11442553 Query 48432 CAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCT 48491 | ||||| | ||||| || ||||||||||||||||||||||| | |||| |||| Sbjct 11442552 CGGAGTGGATGTTCTCGATGGCGATCTGGAACCCGTAGAAGGCGCGCCCCTCGGCGACCT 11442493 Query 48492 GCACTTC 48498 |||| || Sbjct 11442492 GCACGTC 11442486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931419991377920