Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21]
9,688 sequences; 362,063,720 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq6 201 2e-46
>seq6
Length=30401905
Score = 201 bits (222), Expect = 2e-46
Identities = 494/737 (67%), Gaps = 26/737 (4%)
Strand=Plus/Minus
Query 25595 ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGAT 25654
||||| | || ||||| || ||||| ||||| || ||| |||||| || | || |
Sbjct 1930105 ACGTGCTCGCCTTCTTCGCGGCCTCCGATGGCATCGTGCTCGAGAACCTCGCCTCCAGGT 1930046
Query 25655 TCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCG 25714
||| || |||||| || ||||| |||||||| |||||||| |||||||
Sbjct 1930045 TCATGTCCGACGTGCAGGTCGCCGAGGCGCGCGCCTTCTACGGGTTCCAGATCGCCATCG 1929986
Query 25715 AAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCCG 25774
| || | ||||| ||| |||| | ||| || ||||||||| |||| || ||
Sbjct 1929985 AGAACATCCACTCGGAGATGTACTCGCTGCTGCTCGAGACGTACATCCGCGACGACGTCG 1929926
Query 25775 AGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGT 25834
||| || || || || | |||||||| | | ||| | | | ||||| |
Sbjct 1929925 AGAAGGACCGCCTCTTCCGCGCCATCGACACCGTCCCCGCCGTGCGCCGCAAGGCCGACT 1929866
Query 25835 GGGCCATGAAGTGGATCAACAGCCA-GAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTT 25893
|||||||| |||||| || || ||||||| || ||||||||| || |||||
Sbjct 1929865 GGGCCATGCGATGGATCGACGGCGGCGAGCGCTTCGC----CGAGCGGCTCGTCGCCTTC 1929810
Query 25894 GC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGC 25951
|| ||| || ||||| ||||| ||| || || || |||| |||||||||||||||||
Sbjct 1929809 GCCTGC-GTCGAGGGGATCTTCTTCTCGGGCTCCTTCTGCG-CCATCTTCTGGCTCAAGA 1929752
Query 25952 AGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGT 26010
|| | |||| |||||| || || ||| ||||||||||||||| | | ||||||||
Sbjct 1929751 AGC-GCGGACTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGC 1929693
Query 26011 CTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAA 26070
|||||| | || || |||||||| |||||| | || | | | | | || || | |
Sbjct 1929692 CTCCACTGCGACTTCGCCTGCCTCCTCTAC---GACCTCCTCCGCGGC-AAGCTCGACGA 1929637
Query 26071 GAGAC-CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNN 26129
| || |||| | ||| || || || ||||| ||||||| ||||||
Sbjct 1929636 GGCACGCGTCCAGGAGATCGTCGCCGACGCCGTGGACATCGAGAGGGAGTTCGTCTGCGA 1929577
Query 26130 NNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTA 26189
| || |||||| | ||||||||||| ||||| ||||
Sbjct 1929576 CGCGCTCCCCGTCGCGCTCGTCGGGATGAACGGCGAGCTCATGAGCCAGTACATCGAGTT 1929517
Query 26190 TGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGA--CTCTACA--GTACGCCT 26244
|| ||||||| ||||| || | ||| || || ||| | |||| || ||||
Sbjct 1929516 CGTCGCCGACCGGCTGCTCATGGC-GCTCGG--GTGCAAGAAGATGTACAACGT-CGCC- 1929462
Query 26245 AACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAG 26304
||||||||||||| ||||| ||| || || | || |||||||||||||| || |||
Sbjct 1929461 AACCCGTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACCAACTTCTTCGAGAAG 1929402
Query 26305 AGGGTCGGCGACTATCA 26321
| ||||||||||| ||
Sbjct 1929401 CGCGTCGGCGACTACCA 1929385
Score = 183 bits (202), Expect = 6e-41
Identities = 494/740 (67%), Gaps = 31/740 (4%)
Strand=Plus/Plus
Query 25595 ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAG-AGA 25653
||||| | || ||||| || ||||| ||||| || ||| |||||| | || ||
Sbjct 11442417 ACGTGCTCGCCTTCTTCGCCGCCTCCGATGGCATCGTGCTCGAGAAACCTCGCCTCCAGG 11442476
Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713
|||| || |||||| || |||| |||||||| |||||||| ||||||
Sbjct 11442477 TTCATGTCCGACGTGCAGGTCGCCGAGGGGCGCGCCTTCTACGGGTTCCAGATCGCCATC 11442536
Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCC 25773
|| || | ||||| ||| |||| | ||| || ||| ||||| |||| ||||
Sbjct 11442537 GAGAACATCCACTCCGAGATGTACTCGCTGCTGCTCGAGACCTACATCCGCGACGGCGCC 11442596
Query 25774 GAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGG-AAGGCGCG 25832
|||| || ||||||| | |||||||| ||| ||| || | | |||||
Sbjct 11442597 GAGAAGGACAGGCTGTTCCGCGCCATCGA-CACCGTCCCGGCCGTGCGCCGCAAGGCCGA 11442655
Query 25833 GTGGGCCATGAAGTGGATCAACAGCCA-GAGCGCTACGTTTGGCGAGCGGCTGGTAGCCT 25891
||||||||| |||||| || || ||||||| || |||||| || || ||||
Sbjct 11442656 CTGGGCCATGCGCTGGATCGACGGCGGCGAGCGCTTCGC----CGAGCGCCTCGTCGCCT 11442711
Query 25892 TTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAA 25949
| || ||| || ||||| ||||| ||| || || || |||| ||||||||||||||||
Sbjct 11442712 TCGCCTGC-GTCGAGGGGATCTTCTTCTCGGGCTCCTTCTGCG-CCATCTTCTGGCTCAA 11442769
Query 25950 GCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGG 26009
| || |||| |||||| || || ||| ||||||||||||||| | | ||||||||
Sbjct 11442770 GAAGCGGGGGCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGG 11442829
Query 26010 TCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCA 26069
|| ||| | || || |||||||| |||||| | || | | | | ||| | || |
Sbjct 11442830 CCTGCACTGCGACTTCGCCTGCCTCCTCTAC---GACCTCCTCCGCGGCAAGC--TC-GA 11442883
Query 26070 AGAGAC---CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNN 26126
||| | |||| | ||| || || || || || ||||||| ||||||
Sbjct 11442884 CGAGGCGCGCGTCCGCGAGATCGTCGCCGACGCCGTCGACATCGAGAGGGAGTTCGTCTG 11442943
Query 26127 NNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGA 26186
| ||||||||| | ||||||||||| ||||| ||
Sbjct 11442944 CGACGCGCTCCCCGTCGCGCTCGTCGGCATGAACGGCGACCTCATGAGCCAGTACATCGA 11443003
Query 26187 GTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGA--CTCTACA--GTACG 26241
|| || ||||||| || || || | ||| || || || ||| | |||| || ||
Sbjct 11443004 GTTCGTCGCCGACCGCCTCCTCATGGC-GCTCGG-CT-GCAAGAAGATGTACAACGT-CG 11443059
Query 26242 CCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAA 26301
|| ||||| ||||||| ||||| ||| || || | || |||||||||||||| ||
Sbjct 11443060 CC-AACCCCTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACCAACTTCTTCGAG 11443118
Query 26302 AAGAGGGTCGGCGACTATCA 26321
||| | ||||||||||| ||
Sbjct 11443119 AAGCGCGTCGGCGACTACCA 11443138
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928732316894720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |