Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21] 9,688 sequences; 362,063,720 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq6 201 2e-46 >seq6 Length=30401905 Score = 201 bits (222), Expect = 2e-46 Identities = 494/737 (67%), Gaps = 26/737 (4%) Strand=Plus/Minus Query 25595 ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGAT 25654 ||||| | || ||||| || ||||| ||||| || ||| |||||| || | || | Sbjct 1930105 ACGTGCTCGCCTTCTTCGCGGCCTCCGATGGCATCGTGCTCGAGAACCTCGCCTCCAGGT 1930046 Query 25655 TCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCG 25714 ||| || |||||| || ||||| |||||||| |||||||| ||||||| Sbjct 1930045 TCATGTCCGACGTGCAGGTCGCCGAGGCGCGCGCCTTCTACGGGTTCCAGATCGCCATCG 1929986 Query 25715 AAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCCG 25774 | || | ||||| ||| |||| | ||| || ||||||||| |||| || || Sbjct 1929985 AGAACATCCACTCGGAGATGTACTCGCTGCTGCTCGAGACGTACATCCGCGACGACGTCG 1929926 Query 25775 AGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGT 25834 ||| || || || || | |||||||| | | ||| | | | ||||| | Sbjct 1929925 AGAAGGACCGCCTCTTCCGCGCCATCGACACCGTCCCCGCCGTGCGCCGCAAGGCCGACT 1929866 Query 25835 GGGCCATGAAGTGGATCAACAGCCA-GAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTT 25893 |||||||| |||||| || || ||||||| || ||||||||| || ||||| Sbjct 1929865 GGGCCATGCGATGGATCGACGGCGGCGAGCGCTTCGC----CGAGCGGCTCGTCGCCTTC 1929810 Query 25894 GC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGC 25951 || ||| || ||||| ||||| ||| || || || |||| ||||||||||||||||| Sbjct 1929809 GCCTGC-GTCGAGGGGATCTTCTTCTCGGGCTCCTTCTGCG-CCATCTTCTGGCTCAAGA 1929752 Query 25952 AGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGT 26010 || | |||| |||||| || || ||| ||||||||||||||| | | |||||||| Sbjct 1929751 AGC-GCGGACTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGC 1929693 Query 26011 CTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAA 26070 |||||| | || || |||||||| |||||| | || | | | | | || || | | Sbjct 1929692 CTCCACTGCGACTTCGCCTGCCTCCTCTAC---GACCTCCTCCGCGGC-AAGCTCGACGA 1929637 Query 26071 GAGAC-CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNN 26129 | || |||| | ||| || || || ||||| ||||||| |||||| Sbjct 1929636 GGCACGCGTCCAGGAGATCGTCGCCGACGCCGTGGACATCGAGAGGGAGTTCGTCTGCGA 1929577 Query 26130 NNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTA 26189 | || |||||| | ||||||||||| ||||| |||| Sbjct 1929576 CGCGCTCCCCGTCGCGCTCGTCGGGATGAACGGCGAGCTCATGAGCCAGTACATCGAGTT 1929517 Query 26190 TGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGA--CTCTACA--GTACGCCT 26244 || ||||||| ||||| || | ||| || || ||| | |||| || |||| Sbjct 1929516 CGTCGCCGACCGGCTGCTCATGGC-GCTCGG--GTGCAAGAAGATGTACAACGT-CGCC- 1929462 Query 26245 AACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAG 26304 ||||||||||||| ||||| ||| || || | || |||||||||||||| || ||| Sbjct 1929461 AACCCGTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACCAACTTCTTCGAGAAG 1929402 Query 26305 AGGGTCGGCGACTATCA 26321 | ||||||||||| || Sbjct 1929401 CGCGTCGGCGACTACCA 1929385 Score = 183 bits (202), Expect = 6e-41 Identities = 494/740 (67%), Gaps = 31/740 (4%) Strand=Plus/Plus Query 25595 ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAG-AGA 25653 ||||| | || ||||| || ||||| ||||| || ||| |||||| | || || Sbjct 11442417 ACGTGCTCGCCTTCTTCGCCGCCTCCGATGGCATCGTGCTCGAGAAACCTCGCCTCCAGG 11442476 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 |||| || |||||| || |||| |||||||| |||||||| |||||| Sbjct 11442477 TTCATGTCCGACGTGCAGGTCGCCGAGGGGCGCGCCTTCTACGGGTTCCAGATCGCCATC 11442536 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCC 25773 || || | ||||| ||| |||| | ||| || ||| ||||| |||| |||| Sbjct 11442537 GAGAACATCCACTCCGAGATGTACTCGCTGCTGCTCGAGACCTACATCCGCGACGGCGCC 11442596 Query 25774 GAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGG-AAGGCGCG 25832 |||| || ||||||| | |||||||| ||| ||| || | | ||||| Sbjct 11442597 GAGAAGGACAGGCTGTTCCGCGCCATCGA-CACCGTCCCGGCCGTGCGCCGCAAGGCCGA 11442655 Query 25833 GTGGGCCATGAAGTGGATCAACAGCCA-GAGCGCTACGTTTGGCGAGCGGCTGGTAGCCT 25891 ||||||||| |||||| || || ||||||| || |||||| || || |||| Sbjct 11442656 CTGGGCCATGCGCTGGATCGACGGCGGCGAGCGCTTCGC----CGAGCGCCTCGTCGCCT 11442711 Query 25892 TTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAA 25949 | || ||| || ||||| ||||| ||| || || || |||| |||||||||||||||| Sbjct 11442712 TCGCCTGC-GTCGAGGGGATCTTCTTCTCGGGCTCCTTCTGCG-CCATCTTCTGGCTCAA 11442769 Query 25950 GCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGG 26009 | || |||| |||||| || || ||| ||||||||||||||| | | |||||||| Sbjct 11442770 GAAGCGGGGGCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGG 11442829 Query 26010 TCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCA 26069 || ||| | || || |||||||| |||||| | || | | | | ||| | || | Sbjct 11442830 CCTGCACTGCGACTTCGCCTGCCTCCTCTAC---GACCTCCTCCGCGGCAAGC--TC-GA 11442883 Query 26070 AGAGAC---CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNN 26126 ||| | |||| | ||| || || || || || ||||||| |||||| Sbjct 11442884 CGAGGCGCGCGTCCGCGAGATCGTCGCCGACGCCGTCGACATCGAGAGGGAGTTCGTCTG 11442943 Query 26127 NNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGA 26186 | ||||||||| | ||||||||||| ||||| || Sbjct 11442944 CGACGCGCTCCCCGTCGCGCTCGTCGGCATGAACGGCGACCTCATGAGCCAGTACATCGA 11443003 Query 26187 GTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGA--CTCTACA--GTACG 26241 || || ||||||| || || || | ||| || || || ||| | |||| || || Sbjct 11443004 GTTCGTCGCCGACCGCCTCCTCATGGC-GCTCGG-CT-GCAAGAAGATGTACAACGT-CG 11443059 Query 26242 CCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAA 26301 || ||||| ||||||| ||||| ||| || || | || |||||||||||||| || Sbjct 11443060 CC-AACCCCTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACCAACTTCTTCGAG 11443118 Query 26302 AAGAGGGTCGGCGACTATCA 26321 ||| | ||||||||||| || Sbjct 11443119 AAGCGCGTCGGCGACTACCA 11443138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928732316894720