Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21] 9,688 sequences; 362,063,720 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq3 131 1e-24 seq6 111 1e-18 seq2 96.9 2e-14 seq4 95.1 8e-14 seq12 89.7 3e-12 seq5 87.8 1e-11 >seq3 Length=46202548 Score = 131 bits (144), Expect = 1e-24 Identities = 114/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || | |||||||| || || || |||||||| || | || ||||||||||||| Sbjct 43849344 ATGCTGTTGTCACTGTTCCTGCTTACTTCAATGATTCCCAGAGGCAGGCAACTAAAGATG 43849403 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || ||||| |||||||||||| | ||||| || ||||| |||||||| || ||| Sbjct 43849404 CCGGTGTTATTGCGGGTCTTAATGTTATGCGTATCATCAATGAGCCAACAGCTGCTGCAA 43849463 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||||||||||||||| ||||| Sbjct 43849464 TTGCTTATGGTCTTGACAAGAA 43849485 Score = 100 bits (110), Expect = 2e-15 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 ||||| |||||||||| ||||| || ||||| || || | |||||| |||||||| Sbjct 39970817 GCAGTGGTTACTGTTCCTGCATACTTCAATGACTCACAGAGGACAGCAACAAAAGATGCT 39970876 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 ||| | |||||||| | | ||| | || ||||| ||||| || || || || | ||| Sbjct 39970877 GGACGTATTGCAGGATTGGAAGTTCTCCGCATTATAAATGAGCCGACTGCTGCATCCCTT 39970936 Query 474857 GCTTATGGTCTTGATAAGAA 474876 ||||||||| |||| ||||| Sbjct 39970937 GCTTATGGTTTTGAGAAGAA 39970956 Score = 87.8 bits (96), Expect = 1e-11 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 || || |||||||||||||| ||||| |||||| |||| ||||| || || || ||||| Sbjct 621707 GCTGTGATTACTGTTCCAGCTTATTTCAATGATGCTCAGCGTCAGGCTACCAAGGATGCT 621648 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || | || || || ||| |||| | | || || |||||||| || || || || || Sbjct 621647 GGTCGCATCGCTGGACTTGATGTCCAAAGAATCATCAATGAACCCACTGCTGCTGCTCTG 621588 Query 474857 GCTTATGG 474864 ||||||| Sbjct 621587 TCTTATGG 621580 Score = 86.0 bits (94), Expect = 4e-11 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 476087 GAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGAT 476146 || || || |||||||| || | || ||||| ||||||||||| | |||||||||||| Sbjct 39974074 GATGGAATCCCTCCTGCACCACGTGGTGTTCCACAAATTGAAGTCAAGTTTGATATTGAT 39974133 Query 476147 GCAAATGGTATTCTTAATGTTACTGCTTGTGATAA 476181 || ||||||||||| |||| ||||| |||||| Sbjct 39974134 GCCAATGGTATTCTCTCTGTTGCTGCTATTGATAA 39974168 Score = 86.0 bits (94), Expect = 4e-11 Identities = 120/166 (72%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 321744 TCAATATTATGTTCCGTAACAATTTCATCAAATGTAAGATTTTTTGCAATAATTAATGGT 321803 ||||| |||| | |||||| |||| |||| || || |||||| | |||| Sbjct 42915629 TCAATGTTATATGGAGTAACAGTTTCTGGGTATGTCAGGTTCAAAGCAATACTCCATGGC 42915688 Query 321804 AAACCAACTTCATTCAGTGC-AATATTTGGATCAGATGTGATAACTGTACGACCAGACAT 321862 | || | ||||| || || |||||| || || | |||||| || |||||| | || | Sbjct 42915689 ACTCCCAATTCAT-CAATGTTAATATTCGGGTCTGGTGTGATGACAGTACGAGCTGAGAA 42915747 Query 321863 ATCAACACGTTTACCCATAAGATTTCCTCTAATACGACCTTCTTTT 321908 ||||||||| || ||||| | ||||||||||| |||||||| ||| Sbjct 42915748 ATCAACACGCTTCCCCATCAAGTTTCCTCTAATGCGACCTTCCTTT 42915793 >seq6 Length=30401905 Score = 111 bits (122), Expect = 1e-18 Identities = 130/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || ||||| || || || | | ||| || |||||||| |||||||| || |||||||| Sbjct 26902579 TTGTAATCCGCGAGGGTGCGGCCATCCTCTAGTTGCTTGCCAGCAAAGATGAGACGTTGC 26902520 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || ||||| ||||| || ||||||||||||||||| || ||| | ||||| |||||| Sbjct 26902519 TGGTCAGGTGGAATGCCCTCCTTGTCTTGAATCTTGGCCTTCACATCGTCAATTGTATCA 26902460 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | || ||||| || || || || ||||| ||||| || || || || Sbjct 26902459 GAGGACTCAACCTCGAGGGTGATGGTCTTGCCAGTGAGTGTCTTCACAAAGATCTG 26902404 >seq2 Length=36083738 Score = 96.9 bits (106), Expect = 2e-14 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 || || ||||| |||||||| |||||||||||| |||| ||||| ||||| || ||||| Sbjct 32683604 GCCGTGATTACAGTTCCAGCTTATTTTAATGATGCTCAGCGTCAGGCAACCAAGGATGCT 32683545 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || | ||||| || ||| |||| | || || ||||||||||| || || || || Sbjct 32683544 GGTCGCATTGCTGGACTTGATGTCCAGAGGATCATCAATGAACCAACTGCTGCTGCTCTG 32683485 Query 474857 GCTTATGG 474864 ||||||| Sbjct 32683484 TCTTATGG 32683477 >seq4 Length=32292456 Score = 95.1 bits (104), Expect = 8e-14 Identities = 157/222 (71%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAA--GTGTACTTTCTTTAGAAACATTATAATCAGCTAGA 480608 |||||| ||||| ||||| || | ||| ||| | | || |||||||| || ||| Sbjct 28749526 ACGAAGGCGGAGGACAAGGTGCAAGGTGGACTCCTTCTGGATG--TTATAATCCGCGAGA 28749469 Query 480609 GTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATT 480668 || | ||| ||||| ||||| ||||| || ||||| || || || || ||||| || Sbjct 28749468 GTACGCCCATCCTCAAGCTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCCGGAGGGATG 28749409 Query 480669 CCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTG-TGAAGTTTC 480727 || ||||| || |||||||| || ||| ||||| ||||| | | | || | | Sbjct 28749408 CCCTCCTTATCCTGAATCTTAGCCTTCACATTGTCAATCGTATCGGAGGACTCAACCTCC 28749349 Query 480728 AAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||| | || || || || ||||| ||||||||||| || || Sbjct 28749348 AAGG-TGATGGTCTTGCCAGTGAGGGTCTTAACGAATATCTG 28749308 >seq12 Length=18681871 Score = 89.7 bits (98), Expect = 3e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || | |||||||| || || || ||||| || || | || || || || |||| Sbjct 2060994 ATGCCGTTGTCACTGTTCCTGCCTACTTCAATGACTCCCAGAGGCAGGCCACCAAGGATG 2060935 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | ||| ||||| ||||| ||||| | ||||| || || || || || || || || Sbjct 2060934 CTGGAGTGATTGCTGGTCTCAATGTCATGCGTATCATCAACGAGCCGACTGCTGCAGCTA 2060875 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||| ||||||||||||||||| Sbjct 2060874 TTGCCTATGGTCTTGATAAGAA 2060853 >seq5 Length=25164199 Score = 87.8 bits (96), Expect = 1e-11 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 || || ||||| ||||| || || || ||| || | || || ||||| || || Sbjct 21088371 CGGAGGCGGAGGACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCAAGCGTG 21088430 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | |||||| || ||||| ||||| || || ||||| || || || || || ||||| Sbjct 21088431 CGCCCATCTTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATTCCC 21088490 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731 |||||||| || ||||| || ||| ||||| ||||| | | | |||||| Sbjct 21088491 TCCTTGTCCTGGATCTTGGCCTTTACATTGTCAATGGTATCCGAGGACTCAACCTCAAGG 21088550 Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || ||||||||||| || || || || Sbjct 21088551 GTTATGGTCTTGCCAGTGAGAGTCTTCACAAAGATCTG 21088588 Score = 86.0 bits (94), Expect = 4e-11 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 || || || ||||||||||| || || || | || || || || || |||||| Sbjct 21087918 AGGCGCAGAACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCTG 21087977 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 || || || ||||| ||||||||||||||||| || || || || ||||| || ||| Sbjct 21087978 CCGTCCTCCAGCTGCTTGCCAGCAAAAATAAGACGCTGCTGGTCTGGGGGAATGCCCTCC 21088037 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGT 480733 ||||| || ||||| ||||| || || || || | || | | ||||| || Sbjct 21088038 TTGTCCTGGATCTTCGCCTTGACGTTGTCGATCGTGTCTGATGACTCGA-CCTCAAGCGT 21088096 Query 480734 AATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| || || || || || ||||| ||||| || || Sbjct 21088097 AATGGTCTTGCCAGTAAGGGTCTTCACGAAGATCTG 21088132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267763634673824