Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21]
9,688 sequences; 362,063,720 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq3 131 1e-24
seq6 111 1e-18
seq2 96.9 2e-14
seq4 95.1 8e-14
seq12 89.7 3e-12
seq5 87.8 1e-11
>seq3
Length=46202548
Score = 131 bits (144), Expect = 1e-24
Identities = 114/142 (80%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794
|||| || | |||||||| || || || |||||||| || | || |||||||||||||
Sbjct 43849344 ATGCTGTTGTCACTGTTCCTGCTTACTTCAATGATTCCCAGAGGCAGGCAACTAAAGATG 43849403
Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854
| || ||||| |||||||||||| | ||||| || ||||| |||||||| || |||
Sbjct 43849404 CCGGTGTTATTGCGGGTCTTAATGTTATGCGTATCATCAATGAGCCAACAGCTGCTGCAA 43849463
Query 474855 TTGCTTATGGTCTTGATAAGAA 474876
|||||||||||||||| |||||
Sbjct 43849464 TTGCTTATGGTCTTGACAAGAA 43849485
Score = 100 bits (110), Expect = 2e-15
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796
||||| |||||||||| ||||| || ||||| || || | |||||| ||||||||
Sbjct 39970817 GCAGTGGTTACTGTTCCTGCATACTTCAATGACTCACAGAGGACAGCAACAAAAGATGCT 39970876
Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856
||| | |||||||| | | ||| | || ||||| ||||| || || || || | |||
Sbjct 39970877 GGACGTATTGCAGGATTGGAAGTTCTCCGCATTATAAATGAGCCGACTGCTGCATCCCTT 39970936
Query 474857 GCTTATGGTCTTGATAAGAA 474876
||||||||| |||| |||||
Sbjct 39970937 GCTTATGGTTTTGAGAAGAA 39970956
Score = 87.8 bits (96), Expect = 1e-11
Identities = 96/128 (75%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796
|| || |||||||||||||| ||||| |||||| |||| ||||| || || || |||||
Sbjct 621707 GCTGTGATTACTGTTCCAGCTTATTTCAATGATGCTCAGCGTCAGGCTACCAAGGATGCT 621648
Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856
|| | || || || ||| |||| | | || || |||||||| || || || || ||
Sbjct 621647 GGTCGCATCGCTGGACTTGATGTCCAAAGAATCATCAATGAACCCACTGCTGCTGCTCTG 621588
Query 474857 GCTTATGG 474864
|||||||
Sbjct 621587 TCTTATGG 621580
Score = 86.0 bits (94), Expect = 4e-11
Identities = 76/95 (80%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 476087 GAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGAT 476146
|| || || |||||||| || | || ||||| ||||||||||| | ||||||||||||
Sbjct 39974074 GATGGAATCCCTCCTGCACCACGTGGTGTTCCACAAATTGAAGTCAAGTTTGATATTGAT 39974133
Query 476147 GCAAATGGTATTCTTAATGTTACTGCTTGTGATAA 476181
|| ||||||||||| |||| ||||| ||||||
Sbjct 39974134 GCCAATGGTATTCTCTCTGTTGCTGCTATTGATAA 39974168
Score = 86.0 bits (94), Expect = 4e-11
Identities = 120/166 (72%), Gaps = 2/166 (1%)
Strand=Plus/Plus
Query 321744 TCAATATTATGTTCCGTAACAATTTCATCAAATGTAAGATTTTTTGCAATAATTAATGGT 321803
||||| |||| | |||||| |||| |||| || || |||||| | ||||
Sbjct 42915629 TCAATGTTATATGGAGTAACAGTTTCTGGGTATGTCAGGTTCAAAGCAATACTCCATGGC 42915688
Query 321804 AAACCAACTTCATTCAGTGC-AATATTTGGATCAGATGTGATAACTGTACGACCAGACAT 321862
| || | ||||| || || |||||| || || | |||||| || |||||| | || |
Sbjct 42915689 ACTCCCAATTCAT-CAATGTTAATATTCGGGTCTGGTGTGATGACAGTACGAGCTGAGAA 42915747
Query 321863 ATCAACACGTTTACCCATAAGATTTCCTCTAATACGACCTTCTTTT 321908
||||||||| || ||||| | ||||||||||| |||||||| |||
Sbjct 42915748 ATCAACACGCTTCCCCATCAAGTTTCCTCTAATGCGACCTTCCTTT 42915793
>seq6
Length=30401905
Score = 111 bits (122), Expect = 1e-18
Identities = 130/176 (74%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653
|| ||||| || || || | | ||| || |||||||| |||||||| || ||||||||
Sbjct 26902579 TTGTAATCCGCGAGGGTGCGGCCATCCTCTAGTTGCTTGCCAGCAAAGATGAGACGTTGC 26902520
Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713
|| ||||| ||||| || ||||||||||||||||| || ||| | ||||| ||||||
Sbjct 26902519 TGGTCAGGTGGAATGCCCTCCTTGTCTTGAATCTTGGCCTTCACATCGTCAATTGTATCA 26902460
Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
| | | || ||||| || || || || ||||| ||||| || || || ||
Sbjct 26902459 GAGGACTCAACCTCGAGGGTGATGGTCTTGCCAGTGAGTGTCTTCACAAAGATCTG 26902404
>seq2
Length=36083738
Score = 96.9 bits (106), Expect = 2e-14
Identities = 98/128 (77%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796
|| || ||||| |||||||| |||||||||||| |||| ||||| ||||| || |||||
Sbjct 32683604 GCCGTGATTACAGTTCCAGCTTATTTTAATGATGCTCAGCGTCAGGCAACCAAGGATGCT 32683545
Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856
|| | ||||| || ||| |||| | || || ||||||||||| || || || ||
Sbjct 32683544 GGTCGCATTGCTGGACTTGATGTCCAGAGGATCATCAATGAACCAACTGCTGCTGCTCTG 32683485
Query 474857 GCTTATGG 474864
|||||||
Sbjct 32683484 TCTTATGG 32683477
>seq4
Length=32292456
Score = 95.1 bits (104), Expect = 8e-14
Identities = 157/222 (71%), Gaps = 6/222 (3%)
Strand=Plus/Minus
Query 480551 ACGAAGACGGAGTACAAGATGAA--GTGTACTTTCTTTAGAAACATTATAATCAGCTAGA 480608
|||||| ||||| ||||| || | ||| ||| | | || |||||||| || |||
Sbjct 28749526 ACGAAGGCGGAGGACAAGGTGCAAGGTGGACTCCTTCTGGATG--TTATAATCCGCGAGA 28749469
Query 480609 GTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATT 480668
|| | ||| ||||| ||||| ||||| || ||||| || || || || ||||| ||
Sbjct 28749468 GTACGCCCATCCTCAAGCTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCCGGAGGGATG 28749409
Query 480669 CCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTG-TGAAGTTTC 480727
|| ||||| || |||||||| || ||| ||||| ||||| | | | || | |
Sbjct 28749408 CCCTCCTTATCCTGAATCTTAGCCTTCACATTGTCAATCGTATCGGAGGACTCAACCTCC 28749349
Query 480728 AAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|||| | || || || || ||||| ||||||||||| || ||
Sbjct 28749348 AAGG-TGATGGTCTTGCCAGTGAGGGTCTTAACGAATATCTG 28749308
>seq12
Length=18681871
Score = 89.7 bits (98), Expect = 3e-12
Identities = 105/142 (74%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794
|||| || | |||||||| || || || ||||| || || | || || || || ||||
Sbjct 2060994 ATGCCGTTGTCACTGTTCCTGCCTACTTCAATGACTCCCAGAGGCAGGCCACCAAGGATG 2060935
Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854
| ||| ||||| ||||| ||||| | ||||| || || || || || || || ||
Sbjct 2060934 CTGGAGTGATTGCTGGTCTCAATGTCATGCGTATCATCAACGAGCCGACTGCTGCAGCTA 2060875
Query 474855 TTGCTTATGGTCTTGATAAGAA 474876
|||| |||||||||||||||||
Sbjct 2060874 TTGCCTATGGTCTTGATAAGAA 2060853
>seq5
Length=25164199
Score = 87.8 bits (96), Expect = 1e-11
Identities = 150/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611
|| || ||||| ||||| || || || ||| || | || || ||||| || ||
Sbjct 21088371 CGGAGGCGGAGGACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCAAGCGTG 21088430
Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671
| |||||| || ||||| ||||| || || ||||| || || || || || |||||
Sbjct 21088431 CGCCCATCTTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATTCCC 21088490
Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731
|||||||| || ||||| || ||| ||||| ||||| | | | ||||||
Sbjct 21088491 TCCTTGTCCTGGATCTTGGCCTTTACATTGTCAATGGTATCCGAGGACTCAACCTCAAGG 21088550
Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| || || || || ||||||||||| || || || ||
Sbjct 21088551 GTTATGGTCTTGCCAGTGAGAGTCTTCACAAAGATCTG 21088588
Score = 86.0 bits (94), Expect = 4e-11
Identities = 150/216 (69%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614
|| || || ||||||||||| || || || | || || || || || ||||||
Sbjct 21087918 AGGCGCAGAACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCTG 21087977
Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674
|| || || ||||| ||||||||||||||||| || || || || ||||| || |||
Sbjct 21087978 CCGTCCTCCAGCTGCTTGCCAGCAAAAATAAGACGCTGCTGGTCTGGGGGAATGCCCTCC 21088037
Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGT 480733
||||| || ||||| ||||| || || || || | || | | ||||| ||
Sbjct 21088038 TTGTCCTGGATCTTCGCCTTGACGTTGTCGATCGTGTCTGATGACTCGA-CCTCAAGCGT 21088096
Query 480734 AATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
||| || || || || || ||||| ||||| || ||
Sbjct 21088097 AATGGTCTTGCCAGTAAGGGTCTTCACGAAGATCTG 21088132
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3267763634673824
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |