Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21]
9,688 sequences; 362,063,720 total letters
Query= NC_020835.1
Length=47325
Score E
Sequences producing significant alignments: (Bits) Value
seq10 547 2e-151
seq8 547 2e-151
seq7 547 2e-151
>seq10
Length=17164355
Score = 547 bits (606), Expect = 2e-151
Identities = 717/984 (73%), Gaps = 14/984 (1%)
Strand=Plus/Minus
Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893
||||| ||||| |||||||| ||||||||||| |||||||| ||||| | ||||| ||
Sbjct 15961349 AGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATT 15961290
Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAAT 17950
||| | ||||| | |||||||| ||| | || | ||| | | | |||||
Sbjct 15961289 AGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACA-- 15961232
Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010
||||||||||| |||||||| || ||||| ||||||||||| || || | || ||
Sbjct 15961231 -GATTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGT 15961173
Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTT 18070
| ||| || | || |||||||||||||||||||| |||| | | |||||
Sbjct 15961172 GAACCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTT 15961113
Query 18071 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATA 18130
||| |||||||| |||||||| | || ||||| || |||||||| || |||||||||||
Sbjct 15961112 AAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATA 15961053
Query 18131 CGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTC 18190
|||||||| ||||| |||||| | || || | || ||| || ||||| |||||
Sbjct 15961052 AGTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTC 15960993
Query 18191 TCTAAT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACC 18247
|| || || | |||| || |||| || ||||||||| ||||| | || ||
Sbjct 15960992 CCTGATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAACCGCC 15960936
Query 18248 GAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTG 18307
|||||| || || ||||| | ||| || || |||||||||||||| || || || || ||
Sbjct 15960935 GAATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTG 15960876
Query 18308 GAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACT 18367
|||||| | ||| || ||||||||||| || || | |||||||||||||||||||||
Sbjct 15960875 GAATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACT 15960816
Query 18368 CCCTTGTCCAAAAGGATAAA-CGAGAAATACTGAGAAGGCAGCTGCTACTGGTGCGGAAT 18426
||||| |||| ||| |||| | ||||| || | | |||||||| || || || ||||
Sbjct 15960815 TCCTTGACCAATAGGGTAAATCAAGAAA-ACAGCGGTAGCAGCTGCAACAGGAGCTGAAT 15960757
Query 18427 AAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCA 18486
| |||||| |||||| || |||||||| || | |||| |||||||| | || ||||
Sbjct 15960756 ATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCA 15960697
Query 18487 TGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTAT 18546
| ||| || | || | | ||||| | ||||| || | ||| || || || || |
Sbjct 15960696 TATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGT 15960637
Query 18547 ATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGT 18606
|||||||||| || | | |||||||||||| |||||||| ||||| | ||||| ||
Sbjct 15960636 ATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCG 15960577
Query 18607 TAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGA 18666
||| | || | || || || || || || |||||||| || ||||| | || || |
Sbjct 15960576 CAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAA 15960517
Query 18667 CAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATG 18726
||||||||||||||||||| || || || ||||| ||||| | || || || | ||||
Sbjct 15960516 CAGGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATA 15960457
Query 18727 CTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGC 18786
| | || |||||| || | | ||||||||| | || || ||||| || | ||| || |
Sbjct 15960456 CAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGAC 15960397
Query 18787 GGTTGTTTGTACTCGTAACCCAGT 18810
|||| | || || || | |||||
Sbjct 15960396 GGTTTTCGGTGCTAGTTATCCAGT 15960373
>seq8
Length=23026653
Score = 547 bits (606), Expect = 2e-151
Identities = 717/984 (73%), Gaps = 14/984 (1%)
Strand=Plus/Minus
Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893
||||| ||||| |||||||| ||||||||||| |||||||| ||||| | ||||| ||
Sbjct 17291439 AGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATT 17291380
Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAAT 17950
||| | ||||| | |||||||| ||| | || | ||| | | | |||||
Sbjct 17291379 AGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACA-- 17291322
Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010
||||||||||| |||||||| || ||||| ||||||||||| || || | || ||
Sbjct 17291321 -GATTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGT 17291263
Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTT 18070
| ||| || | || |||||||||||||||||||| |||| | | |||||
Sbjct 17291262 GAACCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTT 17291203
Query 18071 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATA 18130
||| |||||||| |||||||| | || ||||| || |||||||| || |||||||||||
Sbjct 17291202 AAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATA 17291143
Query 18131 CGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTC 18190
|||||||| ||||| |||||| | || || | || ||| || ||||| |||||
Sbjct 17291142 AGTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTC 17291083
Query 18191 TCTAAT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACC 18247
|| || || | |||| || |||| || ||||||||| ||||| | || ||
Sbjct 17291082 CCTGATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAACCGCC 17291026
Query 18248 GAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTG 18307
|||||| || || ||||| | ||| || || |||||||||||||| || || || || ||
Sbjct 17291025 GAATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTG 17290966
Query 18308 GAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACT 18367
|||||| | ||| || ||||||||||| || || | |||||||||||||||||||||
Sbjct 17290965 GAATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACT 17290906
Query 18368 CCCTTGTCCAAAAGGATAAA-CGAGAAATACTGAGAAGGCAGCTGCTACTGGTGCGGAAT 18426
||||| |||| ||| |||| | ||||| || | | |||||||| || || || ||||
Sbjct 17290905 TCCTTGACCAATAGGGTAAATCAAGAAA-ACAGCGGTAGCAGCTGCAACAGGAGCTGAAT 17290847
Query 18427 AAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCA 18486
| |||||| |||||| || |||||||| || | |||| |||||||| | || ||||
Sbjct 17290846 ATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCA 17290787
Query 18487 TGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTAT 18546
| ||| || | || | | ||||| | ||||| || | ||| || || || || |
Sbjct 17290786 TATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGT 17290727
Query 18547 ATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGT 18606
|||||||||| || | | |||||||||||| |||||||| ||||| | ||||| ||
Sbjct 17290726 ATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCG 17290667
Query 18607 TAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGA 18666
||| | || | || || || || || || |||||||| || ||||| | || || |
Sbjct 17290666 CAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAA 17290607
Query 18667 CAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATG 18726
||||||||||||||||||| || || || ||||| ||||| | || || || | ||||
Sbjct 17290606 CAGGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATA 17290547
Query 18727 CTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGC 18786
| | || |||||| || | | ||||||||| | || || ||||| || | ||| || |
Sbjct 17290546 CAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGAC 17290487
Query 18787 GGTTGTTTGTACTCGTAACCCAGT 18810
|||| | || || || | |||||
Sbjct 17290486 GGTTTTCGGTGCTAGTTATCCAGT 17290463
Score = 114 bits (126), Expect = 4e-21
Identities = 125/166 (75%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 18031 GCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAAGCTAGCATACTGGAAGA 18090
|||||||||||||||| || |||| | | |||||||| |||||||| |||||||
Sbjct 13113628 GCCAAGCAGCCAAGAAAAAGTGTAAAGAACGAGAGTTGTTAAAACTAGCATATTGGAAGA 13113569
Query 18091 TGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGTCTCTTCTTCTTGGCCAA 18150
| | || ||||| || |||||||| || | ||||||||| |||||||| ||||| ||||
Sbjct 13113568 TTAATCGGCCAAAATAACCATGAGCGGCCATAATATTATAAGTCTCTTCCTCTTGACCAA 13113509
Query 18151 ATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCTAAT 18196
|||| || || | || ||| || ||||| ||||| || ||
Sbjct 13113508 ATTTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTCCCTGAT 13113463
>seq7
Length=26479886
Score = 547 bits (606), Expect = 2e-151
Identities = 717/984 (73%), Gaps = 14/984 (1%)
Strand=Plus/Minus
Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893
||||| ||||| |||||||| ||||||||||| |||||||| ||||| | ||||| ||
Sbjct 22563168 AGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATT 22563109
Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAAT 17950
||| | ||||| | |||||||| ||| | || | ||| | | | |||||
Sbjct 22563108 AGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACA-- 22563051
Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010
||||||||||| |||||||| || ||||| ||||||||||| || || | || ||
Sbjct 22563050 -GATTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGT 22562992
Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTT 18070
| ||| || | || |||||||||||||||||||| |||| | | |||||
Sbjct 22562991 GAACCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTT 22562932
Query 18071 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATA 18130
||| |||||||| |||||||| | || ||||| || |||||||| || |||||||||||
Sbjct 22562931 AAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATA 22562872
Query 18131 CGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTC 18190
|||||||| ||||| |||||| | || || | || ||| || ||||| |||||
Sbjct 22562871 AGTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTC 22562812
Query 18191 TCTAAT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACC 18247
|| || || | |||| || |||| || ||||||||| ||||| | || ||
Sbjct 22562811 CCTGATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAACCGCC 22562755
Query 18248 GAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTG 18307
|||||| || || ||||| | ||| || || |||||||||||||| || || || || ||
Sbjct 22562754 GAATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTG 22562695
Query 18308 GAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACT 18367
|||||| | ||| || ||||||||||| || || | |||||||||||||||||||||
Sbjct 22562694 GAATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACT 22562635
Query 18368 CCCTTGTCCAAAAGGATAAA-CGAGAAATACTGAGAAGGCAGCTGCTACTGGTGCGGAAT 18426
||||| |||| ||| |||| | ||||| || | | |||||||| || || || ||||
Sbjct 22562634 TCCTTGACCAATAGGGTAAATCAAGAAA-ACAGCGGTAGCAGCTGCAACAGGAGCTGAAT 22562576
Query 18427 AAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCA 18486
| |||||| |||||| || |||||||| || | |||| |||||||| | || ||||
Sbjct 22562575 ATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCA 22562516
Query 18487 TGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTAT 18546
| ||| || | || | | ||||| | ||||| || | ||| || || || || |
Sbjct 22562515 TATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGT 22562456
Query 18547 ATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGT 18606
|||||||||| || | | |||||||||||| |||||||| ||||| | ||||| ||
Sbjct 22562455 ATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCG 22562396
Query 18607 TAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGA 18666
||| | || | || || || || || || |||||||| || ||||| | || || |
Sbjct 22562395 CAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAA 22562336
Query 18667 CAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATG 18726
||||||||||||||||||| || || || ||||| ||||| | || || || | ||||
Sbjct 22562335 CAGGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATA 22562276
Query 18727 CTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGC 18786
| | || |||||| || | | ||||||||| | || || ||||| || | ||| || |
Sbjct 22562275 CAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGAC 22562216
Query 18787 GGTTGTTTGTACTCGTAACCCAGT 18810
|||| | || || || | |||||
Sbjct 22562215 GGTTTTCGGTGCTAGTTATCCAGT 22562192
Score = 156 bits (172), Expect = 1e-33
Identities = 215/301 (71%), Gaps = 0/301 (0%)
Strand=Plus/Minus
Query 18510 AAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCA 18569
||||| | ||||| || | ||| || || || || ||||||||||| || | | ||||
Sbjct 22562168 AAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCACTCATCAACAGATGCA 22562109
Query 18570 GCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCT 18629
|||||||| |||||||| |||| | ||||| || ||| | || | || || ||
Sbjct 22562108 GCTTCCCAAATTGGGTAAAAGTTCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCA 22562049
Query 18630 GATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATG 18689
|| || || |||||||| || ||||| | || || ||| || |||||||| |||| ||
Sbjct 22562048 GAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAACATGCCCACGAATATCATCAATA 22561989
Query 18690 TCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCA 18749
|| || ||||| ||||| | || || || | |||| | | || |||||| || | | |
Sbjct 22561988 TCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTA 22561929
Query 18750 GGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTTGTTTGTACTCGTAACCCAG 18809
|||||||| | || || ||||| || | ||| || ||||| | || || || | ||||
Sbjct 22561928 GGGATCATCAAAACACCGAACCATCCGATGTAAAGACGGTTTTCGGTGCTAGTTATCCAG 22561869
Query 18810 T 18810
|
Sbjct 22561868 T 22561868
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 151300991574672
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