Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21]
9,688 sequences; 362,063,720 total letters
Query= NC_020838.1
Length=45728
Score E
Sequences producing significant alignments: (Bits) Value
seq10 506 6e-139
seq8 506 6e-139
seq7 506 6e-139
>seq10
Length=17164355
Score = 506 bits (560), Expect = 6e-139
Identities = 688/957 (72%), Gaps = 2/957 (0%)
Strand=Plus/Minus
Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530
|| ||||| || ||||||||||| || || || || ||||| || || | ||||| ||
Sbjct 15961348 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTA 15961289
Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590
|||||||| | || |||||||| || || || || | || | | | | | ||||
Sbjct 15961288 GCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACAGAT 15961229
Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAAC 21650
||||| || ||||| || || | ||||||||||| ||| | || | |||| |||
Sbjct 15961228 TGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGTGAAC 15961169
Query 21651 CAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAG 21710
||||| ||||| |||||||| ||||| | ||||| || | | ||| || || |||||
Sbjct 15961168 CAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAAA 15961109
Query 21711 CTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTC 21770
||||||||||||||||| | || |||||||| || ||||| || |||||||| ||||||
Sbjct 15961108 CTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATAAGTC 15961049
Query 21771 TCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGA 21830
||||||||||||||||| ||||||| | || || | | |||||| || || |
Sbjct 15961048 TCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTCCCTG 15960989
Query 21831 ATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACG 21890
|| | || || |||| | ||| ||||||||| ||| | || || |||||
Sbjct 15960988 ATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAATACA 15960929
Query 21891 CCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACC 21950
|| || ||||| | ||||||||| ||||||||||| || || ||||| |||||||| ||
Sbjct 15960928 CCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGAATACA 15960869
Query 21951 AGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGT 22010
| ||| ||||||| || || ||||| || || |||||| ||||||| ||| || ||
Sbjct 15960868 ATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGA 15960809
Query 22011 CCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACA 22070
|||| || |||| | ||| ||||| || ||||| || |||||||| || || ||||||
Sbjct 15960808 CCAATAGGGTAAATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATATGCAACA 15960749
Query 22071 AAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCA 22130
||||| || | ||| || || || | || ||||||||||| || ||||| ||| |
Sbjct 15960748 GCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATATAACAA 15960689
Query 22131 AAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCAT 22190
|| |||| | |||||| | || | || | | |||||||| ||||| | |||
Sbjct 15960688 GCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCAC 15960629
Query 22191 TCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTC 22250
||||||| | |||||||||||||||||||| ||||| | |||||| || | |
Sbjct 15960628 TCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGTA 15960569
Query 22251 GGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCT 22310
|||| | ||| || || || || ||||| || || | | || |||| || || ||
Sbjct 15960568 GGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAACAGGCTCA 15960509
Query 22311 CGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAAACAAGTTGTA 22370
|| || ||||| || || || || || || | | |||||||||||||| || ||
Sbjct 15960508 CGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACAGAAGTT 15960449
Query 22371 GCGG-CAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTT 22426
|||| ||| ||| | ||| |||| | || ||||||||||| | |||||||||||
Sbjct 15960448 GCGGTCAATAAGGTAGGGA-TCATCAAAACACCGAACCATCCGATGTAAAGACGGTT 15960393
>seq8
Length=23026653
Score = 506 bits (560), Expect = 6e-139
Identities = 688/957 (72%), Gaps = 2/957 (0%)
Strand=Plus/Minus
Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530
|| ||||| || ||||||||||| || || || || ||||| || || | ||||| ||
Sbjct 17291438 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTA 17291379
Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590
|||||||| | || |||||||| || || || || | || | | | | | ||||
Sbjct 17291378 GCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACAGAT 17291319
Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAAC 21650
||||| || ||||| || || | ||||||||||| ||| | || | |||| |||
Sbjct 17291318 TGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGTGAAC 17291259
Query 21651 CAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAG 21710
||||| ||||| |||||||| ||||| | ||||| || | | ||| || || |||||
Sbjct 17291258 CAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAAA 17291199
Query 21711 CTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTC 21770
||||||||||||||||| | || |||||||| || ||||| || |||||||| ||||||
Sbjct 17291198 CTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATAAGTC 17291139
Query 21771 TCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGA 21830
||||||||||||||||| ||||||| | || || | | |||||| || || |
Sbjct 17291138 TCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTCCCTG 17291079
Query 21831 ATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACG 21890
|| | || || |||| | ||| ||||||||| ||| | || || |||||
Sbjct 17291078 ATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAATACA 17291019
Query 21891 CCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACC 21950
|| || ||||| | ||||||||| ||||||||||| || || ||||| |||||||| ||
Sbjct 17291018 CCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGAATACA 17290959
Query 21951 AGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGT 22010
| ||| ||||||| || || ||||| || || |||||| ||||||| ||| || ||
Sbjct 17290958 ATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGA 17290899
Query 22011 CCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACA 22070
|||| || |||| | ||| ||||| || ||||| || |||||||| || || ||||||
Sbjct 17290898 CCAATAGGGTAAATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATATGCAACA 17290839
Query 22071 AAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCA 22130
||||| || | ||| || || || | || ||||||||||| || ||||| ||| |
Sbjct 17290838 GCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATATAACAA 17290779
Query 22131 AAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCAT 22190
|| |||| | |||||| | || | || | | |||||||| ||||| | |||
Sbjct 17290778 GCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCAC 17290719
Query 22191 TCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTC 22250
||||||| | |||||||||||||||||||| ||||| | |||||| || | |
Sbjct 17290718 TCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGTA 17290659
Query 22251 GGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCT 22310
|||| | ||| || || || || ||||| || || | | || |||| || || ||
Sbjct 17290658 GGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAACAGGCTCA 17290599
Query 22311 CGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAAACAAGTTGTA 22370
|| || ||||| || || || || || || | | |||||||||||||| || ||
Sbjct 17290598 CGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACAGAAGTT 17290539
Query 22371 GCGG-CAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTT 22426
|||| ||| ||| | ||| |||| | || ||||||||||| | |||||||||||
Sbjct 17290538 GCGGTCAATAAGGTAGGGA-TCATCAAAACACCGAACCATCCGATGTAAAGACGGTT 17290483
Score = 147 bits (162), Expect = 6e-31
Identities = 124/150 (83%), Gaps = 2/150 (1%)
Strand=Plus/Minus
Query 21648 AACCAAATACCTACAACAGGCCAGGCAGC-AAGAAAGAAATGAAGACTACGGGAATTATT 21706
|||||||| ||||| ||| |||| ||||| |||||| || || | | ||| || || ||
Sbjct 13113647 AACCAAATCCCTACTACATGCCAAGCAGCCAAGAAA-AAGTGTAAAGAACGAGAGTTGTT 13113589
Query 21707 AAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTA 21766
||| ||||||||||||||||| | || |||||||| || ||||| || | |||||| ||
Sbjct 13113588 AAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCATAATATTATA 13113529
Query 21767 AGTCTCTTCCTCTTGACCAAACTTGTAACC 21796
||||||||||||||||||||| ||||||||
Sbjct 13113528 AGTCTCTTCCTCTTGACCAAATTTGTAACC 13113499
>seq7
Length=26479886
Score = 506 bits (560), Expect = 6e-139
Identities = 688/957 (72%), Gaps = 2/957 (0%)
Strand=Plus/Minus
Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530
|| ||||| || ||||||||||| || || || || ||||| || || | ||||| ||
Sbjct 22563167 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTA 22563108
Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590
|||||||| | || |||||||| || || || || | || | | | | | ||||
Sbjct 22563107 GCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACAGAT 22563048
Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAAC 21650
||||| || ||||| || || | ||||||||||| ||| | || | |||| |||
Sbjct 22563047 TGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGTGAAC 22562988
Query 21651 CAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAG 21710
||||| ||||| |||||||| ||||| | ||||| || | | ||| || || |||||
Sbjct 22562987 CAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAAA 22562928
Query 21711 CTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTC 21770
||||||||||||||||| | || |||||||| || ||||| || |||||||| ||||||
Sbjct 22562927 CTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATAAGTC 22562868
Query 21771 TCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGA 21830
||||||||||||||||| ||||||| | || || | | |||||| || || |
Sbjct 22562867 TCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTCCCTG 22562808
Query 21831 ATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACG 21890
|| | || || |||| | ||| ||||||||| ||| | || || |||||
Sbjct 22562807 ATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAATACA 22562748
Query 21891 CCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACC 21950
|| || ||||| | ||||||||| ||||||||||| || || ||||| |||||||| ||
Sbjct 22562747 CCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGAATACA 22562688
Query 21951 AGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGT 22010
| ||| ||||||| || || ||||| || || |||||| ||||||| ||| || ||
Sbjct 22562687 ATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGA 22562628
Query 22011 CCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACA 22070
|||| || |||| | ||| ||||| || ||||| || |||||||| || || ||||||
Sbjct 22562627 CCAATAGGGTAAATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATATGCAACA 22562568
Query 22071 AAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCA 22130
||||| || | ||| || || || | || ||||||||||| || ||||| ||| |
Sbjct 22562567 GCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATATAACAA 22562508
Query 22131 AAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCAT 22190
|| |||| | |||||| | || | || | | |||||||| ||||| | |||
Sbjct 22562507 GCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCAC 22562448
Query 22191 TCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTC 22250
||||||| | |||||||||||||||||||| ||||| | |||||| || | |
Sbjct 22562447 TCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGTA 22562388
Query 22251 GGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCT 22310
|||| | ||| || || || || ||||| || || | | || |||| || || ||
Sbjct 22562387 GGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAACAGGCTCA 22562328
Query 22311 CGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAAACAAGTTGTA 22370
|| || ||||| || || || || || || | | |||||||||||||| || ||
Sbjct 22562327 CGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACAGAAGTT 22562268
Query 22371 GCGG-CAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTT 22426
|||| ||| ||| | ||| |||| | || ||||||||||| | |||||||||||
Sbjct 22562267 GCGGTCAATAAGGTAGGGA-TCATCAAAACACCGAACCATCCGATGTAAAGACGGTT 22562212
Score = 111 bits (122), Expect = 5e-20
Identities = 181/258 (70%), Gaps = 2/258 (1%)
Strand=Plus/Minus
Query 22170 GGACCGCCGTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGT 22229
|||||||| ||||| | ||| ||||||| | |||||||||||||||||||| ||||
Sbjct 22562144 GGACCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTTC 22562085
Query 22230 AGTCCGATGGCATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAAC 22289
| |||||| || | | |||| | ||| || || || || ||||| || || |
Sbjct 22562084 AATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGT 22562025
Query 22290 AGGGAGCCAGCGACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAG 22349
| || |||| || | | || || |||| || || || || || || | | |||
Sbjct 22562024 AAAGAACCAGAAACATGCCCACGAATATCATCAATATCTACTGGAGGGGCAGCGATGAAG 22561965
Query 22350 GCGATAATAAAACAAGTTGTAGCGG-CAAGGAGGCACGGAATCATAAGGACTCCGAACCA 22408
||||||||||| || || |||| ||| ||| | ||| |||| | || ||||||||
Sbjct 22561964 GCGATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGA-TCATCAAAACACCGAACCA 22561906
Query 22409 TCCTACATAAAGACGGTT 22426
||| | |||||||||||
Sbjct 22561905 TCCGATGTAAAGACGGTT 22561888
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 146191179500640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |