Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21] 9,688 sequences; 362,063,720 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq2 122 4e-23 seq5 91.5 7e-14 >seq2 Length=36083738 Score = 122 bits (134), Expect = 4e-23 Identities = 161/221 (73%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 26064 TACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCA 26123 |||||||||| || |||||||||||||| || || | |||||| ||||||||||| || Sbjct 34745641 TACCTTTTCTCTTCCCTCCACCTTGATCAACATAACGTGCAGTATCATTGAAAACACGCA 34745700 Query 26124 ACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATC 26183 ||| ||||| | ||| | || ||| ||||| | |||| | || || | || Sbjct 34745701 GCATGGGAACAATCCCATTAGATGTTCCATTTGTTCCTCGAATGTAACTCCCAGTAGCTC 34745760 Query 26184 TAATATCGTGAGCATGA-ATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCT 26242 |||||| |||| ||| | ||| ||||||||||| ||||| || | ||||| ||| Sbjct 34745761 TAATATTGTGA-ATTGAGAGACCAATTCCACCAGCACATTTGCTTATGGTAGCACATTCT 34745819 Query 26243 GAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283 || | || || ||||||| | ||||||||| ||||||| Sbjct 34745820 GAGAGAGTGTCATAAATTCCCTCAATGCTATCATCTTTCAT 34745860 >seq5 Length=25164199 Score = 91.5 bits (100), Expect = 7e-14 Identities = 159/227 (70%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 26060 AAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACT 26119 || ||||| ||||| || |||||||||||||| || || | ||||| ||||||||||| Sbjct 3366104 AACCTACCCTTTCTCTTGCCTCCACCTTGATCAACATAACGGGCAGTATCATTGAAAACA 3366163 Query 26120 TTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTC 26179 | ||| ||||| | ||| | || ||| ||||| | | | || | | || || Sbjct 3366164 CGTAGCATAGGAACAATCCCATTGGAGGTTCCATTTGTTCCACGGATATAGCTCCCAGTA 3366223 Query 26180 GATCTAATATCGTGAGCATGA-ATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACA 26238 | || ||||| |||| | ||| | ||| ||||| ||||| |||| || | ||||| Sbjct 3366224 GCTCGAATATTGTGAAC-TGATACACCAATTCCTCCAGCAGATTTGCTTATGACAGCACA 3366282 Query 26239 ATC--TGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283 || | ||| ||||| | ||||| | ||||| ||| ||||||| Sbjct 3366283 TTCCTTCAAA--GTATCATAGATTCCCTCAATGCTGTCATCTTTCAT 3366327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253010122934600