Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21] 9,688 sequences; 362,063,720 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq6 123 3e-23 >seq6 Length=30401905 Score = 123 bits (136), Expect = 3e-23 Identities = 116/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 65070 CTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATT 65129 ||||||||||||||| | || || || || || ||||| ||||||||||| || || || Sbjct 11442689 CTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGCTCCTT 11442748 Query 65130 CTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189 |||||| || | ||| | ||||||||||| |||||||| ||||| |||||| || || Sbjct 11442749 CTGCGCCATCTTCTGGCTCAAGAAGCGGGGGCTCATGCCGGGCCTCACCTTCTCCAACGA 11442808 Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCAC 65217 || || ||||| || ||||| || ||| Sbjct 11442809 GCTCATCTCCCGCGACGAGGGCCTGCAC 11442836 Score = 118 bits (130), Expect = 1e-21 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 65070 CTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATT 65129 |||||||||||| || | || || || || || ||||| ||||||||||| || || || Sbjct 1929834 CTTCGCCGAGCGGCTCGTCGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGCTCCTT 1929775 Query 65130 CTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189 |||||| || | ||| | |||||||| || |||||||| ||||| |||||| || || Sbjct 1929774 CTGCGCCATCTTCTGGCTCAAGAAGCGCGGACTCATGCCGGGCCTCACCTTCTCCAACGA 1929715 Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCAC 65217 || || ||||| || ||||| |||||| Sbjct 1929714 GCTCATCTCCCGCGACGAGGGCCTCCAC 1929687 Score = 96.9 bits (106), Expect = 4e-15 Identities = 190/281 (68%), Gaps = 0/281 (0%) Strand=Plus/Plus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||||||||||||||| || || |||||| ||||||| ||||| || | | || Sbjct 26807131 TTTGTGGAGATGTTTGTGGGAGTTGGTGCCTCCCGGGTTCGTGATCTTTTCAAGAAGGCA 26807190 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 || ||| || || || || || ||||||| |||||||| || || | |||| | Sbjct 26807191 AAGGAGAATGCTCCTTGCATAGTATTTGTTGATGAAATTGATGCTGTTGGAAGGCAAAGA 26807250 Query 175516 AGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACC 175575 | | ||| | | |||||| || || || || || | ||||| | || || Sbjct 26807251 GGAACAGGTATTGGTGGTGGAAATGATGAAAGGGAGCAGACTTTGAATCAGTTGCTGACT 26807310 Query 175576 GAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTG 175635 ||||||||||| ||||| | ||||| || | |||||||| ||||| || | | Sbjct 26807311 GAGATGGATGGTTTTGAGGGGAACACTGGAATCATTGTTATTGCTGCCACCAACAGGGCT 26807370 Query 175636 GATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGA 175676 |||||||| ||| || | || | || || |||||||| Sbjct 26807371 GATATCCTGGATTCTGCTTTACTCAGACCTGGACGTTTTGA 26807411 Score = 93.3 bits (102), Expect = 5e-14 Identities = 215/321 (67%), Gaps = 10/321 (3%) Strand=Plus/Plus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 || |||||||||||| || ||| |||| || ||| || || || ||||| || Sbjct 30122746 GGGGCCAAGATCCCCAAGGGATGCCTGCTCGTCGGCCCGCCCGGGACCGGGAAGACACTG 30122805 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAAC 175395 || || || ||| |||| || || | || || ||| || | || |||||| | Sbjct 30122806 CTGGCGCGTGCCGTCGCCGGGGAGGCCGGAGTGCCCTTCTTC---TCCTGTGCCGCGTCC 30122862 Query 175396 ---TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATC 175452 || || ||| |||| || ||||| || ||| ||||| | || || || || | Sbjct 30122863 GAGTTCGTCGAGCTGTTCGTCGGTGTCGGCGCCTCCAGGGTCAGGGACCTGTTCGAGAAG 30122922 Query 175453 GCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAA 175512 ||| | || || || || ||||||||||||||||||||||| || || | ||| Sbjct 30122923 GCCAAGGCCAAGGCCCCTTGCATCGTCTTCATTGATGAGATTGATGCCGTCGGGAGGCAG 30122982 Query 175513 CGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTAC 175570 || | ||||| | | | | | |||||| ||||| || || || || || || || Sbjct 30122983 CGTGGTGCTGGGCTCGGAGG--GGGAAATGATGAGAGGGAGCAGACCATCAACCAGCTCT 30123040 Query 175571 TCACCGAGATGGATGGCTTTG 175591 | || ||||||||||| |||| Sbjct 30123041 TGACTGAGATGGATGGATTTG 30123061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596497355421440