Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21]
9,688 sequences; 362,063,720 total letters
Query= NC_020855.1
Length=192497
Score E
Sequences producing significant alignments: (Bits) Value
seq10 560 1e-154
seq8 560 1e-154
seq7 560 1e-154
>seq10
Length=17164355
Score = 560 bits (620), Expect = 1e-154
Identities = 714/983 (73%), Gaps = 0/983 (0%)
Strand=Plus/Minus
Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950
|||| ||||| ||||||||||| ||||| | ||| ||||| ||||||||||| | ||
Sbjct 15961348 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTA 15961289
Query 7951 GCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGAT 8010
|| | ||| | | ||| |||| ||| ||| | ||| | |||||| || |||
Sbjct 15961288 GCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACAGAT 15961229
Query 8011 TGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAAC 8070
||||| || || |||||||| || || || ||||| || | |||||| | || ||| |||
Sbjct 15961228 TGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGTGAAC 15961169
Query 8071 CAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTTAAAC 8130
|||| | ||| || || | | ||| | ||||||||| | | | | |||||||||
Sbjct 15961168 CAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAAA 15961109
Query 8131 GATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTC 8190
||||| ||||||||||||| ||||| || |||||||| || ||||||||||| |||
Sbjct 15961108 CTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATAAGTC 15961049
Query 8191 TCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCTG 8250
||||| ||||||||||| | ||||| | || ||| || | |||||| || || |||
Sbjct 15961048 TCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTCCCTG 15960989
Query 8251 ATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACATA 8310
|| | | ||| || || || ||||| |||||||||||||| || || || ||||| | |
Sbjct 15960988 ATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAATACA 15960929
Query 8311 CCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACG 8370
|| ||||| ||| ||| || || ||||||||||| |||||||||||||| ||||||||
Sbjct 15960928 CCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGAATACA 15960869
Query 8371 AACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGA 8430
| ||| ||||| || |||||||| || |||| |||||| ||||||||||| || |||
Sbjct 15960868 ATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGA 15960809
Query 8431 CCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTACA 8490
|||| || || | ||||| || ||| |||||| | || ||||| |||||| |||
Sbjct 15960808 CCAATAGGGTAAATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATATGCAACA 15960749
Query 8491 CAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAAGCA 8550
||||| || | |||||| | ||| | | ||||||| | |||||| ||| |
Sbjct 15960748 GCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATATAACAA 15960689
Query 8551 GAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACCAC 8610
| | |||| | |||||| | | || | || ||| ||||| || || || ||||||
Sbjct 15960688 GCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCAC 15960629
Query 8611 TCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGAT 8670
||||| | | |||||||||||||| || || ||||| ||||| || || ||||
Sbjct 15960628 TCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGTA 15960569
Query 8671 GGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCA 8730
|||| | ||||||||||| || |||||||| || | || ||||| | |||||| |||
Sbjct 15960568 GGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAACAGGCTCA 15960509
Query 8731 CGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAGCA 8790
|||||||| || ||||| || || || ||||| || || || | ||||| || ||
Sbjct 15960508 CGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACAGAAGTT 15960449
Query 8791 GCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAGTCTGTTGTTT 8850
|| | || ||| ||| ||||| | ||| || ||||| |||| ||||| | ||| |
Sbjct 15960448 GCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGGTTTTCG 15960389
Query 8851 GTACTTGTAACCCACTCGCAAAA 8873
|| || || | ||| | ||| ||
Sbjct 15960388 GTGCTAGTTATCCAGTTGCAGAA 15960366
>seq8
Length=23026653
Score = 560 bits (620), Expect = 1e-154
Identities = 714/983 (73%), Gaps = 0/983 (0%)
Strand=Plus/Minus
Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950
|||| ||||| ||||||||||| ||||| | ||| ||||| ||||||||||| | ||
Sbjct 17291438 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTA 17291379
Query 7951 GCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGAT 8010
|| | ||| | | ||| |||| ||| ||| | ||| | |||||| || |||
Sbjct 17291378 GCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACAGAT 17291319
Query 8011 TGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAAC 8070
||||| || || |||||||| || || || ||||| || | |||||| | || ||| |||
Sbjct 17291318 TGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGTGAAC 17291259
Query 8071 CAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTTAAAC 8130
|||| | ||| || || | | ||| | ||||||||| | | | | |||||||||
Sbjct 17291258 CAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAAA 17291199
Query 8131 GATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTC 8190
||||| ||||||||||||| ||||| || |||||||| || ||||||||||| |||
Sbjct 17291198 CTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATAAGTC 17291139
Query 8191 TCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCTG 8250
||||| ||||||||||| | ||||| | || ||| || | |||||| || || |||
Sbjct 17291138 TCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTCCCTG 17291079
Query 8251 ATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACATA 8310
|| | | ||| || || || ||||| |||||||||||||| || || || ||||| | |
Sbjct 17291078 ATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAATACA 17291019
Query 8311 CCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACG 8370
|| ||||| ||| ||| || || ||||||||||| |||||||||||||| ||||||||
Sbjct 17291018 CCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGAATACA 17290959
Query 8371 AACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGA 8430
| ||| ||||| || |||||||| || |||| |||||| ||||||||||| || |||
Sbjct 17290958 ATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGA 17290899
Query 8431 CCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTACA 8490
|||| || || | ||||| || ||| |||||| | || ||||| |||||| |||
Sbjct 17290898 CCAATAGGGTAAATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATATGCAACA 17290839
Query 8491 CAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAAGCA 8550
||||| || | |||||| | ||| | | ||||||| | |||||| ||| |
Sbjct 17290838 GCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATATAACAA 17290779
Query 8551 GAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACCAC 8610
| | |||| | |||||| | | || | || ||| ||||| || || || ||||||
Sbjct 17290778 GCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCAC 17290719
Query 8611 TCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGAT 8670
||||| | | |||||||||||||| || || ||||| ||||| || || ||||
Sbjct 17290718 TCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGTA 17290659
Query 8671 GGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCA 8730
|||| | ||||||||||| || |||||||| || | || ||||| | |||||| |||
Sbjct 17290658 GGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAACAGGCTCA 17290599
Query 8731 CGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAGCA 8790
|||||||| || ||||| || || || ||||| || || || | ||||| || ||
Sbjct 17290598 CGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACAGAAGTT 17290539
Query 8791 GCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAGTCTGTTGTTT 8850
|| | || ||| ||| ||||| | ||| || ||||| |||| ||||| | ||| |
Sbjct 17290538 GCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGGTTTTCG 17290479
Query 8851 GTACTTGTAACCCACTCGCAAAA 8873
|| || || | ||| | ||| ||
Sbjct 17290478 GTGCTAGTTATCCAGTTGCAGAA 17290456
Score = 113 bits (124), Expect = 6e-20
Identities = 136/185 (74%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 8068 AACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTTA 8127
||||||| | ||| || | | | ||| | ||| ||||| | | | | |||||||
Sbjct 13113647 AACCAAATCCCTACTACATGCCAAGCAGCCAAGAAAAAGTGTAAAGAACGAGAGTTGTTA 13113588
Query 8128 AACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAG 8187
|| ||||| ||||||||||||| ||||| || |||||||| || | |||||||||
Sbjct 13113587 AAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCATAATATTATAA 13113528
Query 8188 GTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCT 8247
|||||||| ||||||||||| || ||||| | || ||| || | |||||| || ||
Sbjct 13113527 GTCTCTTCCTCTTGACCAAATTTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTCC 13113468
Query 8248 CTGAT 8252
|||||
Sbjct 13113467 CTGAT 13113463
>seq7
Length=26479886
Score = 560 bits (620), Expect = 1e-154
Identities = 714/983 (73%), Gaps = 0/983 (0%)
Strand=Plus/Minus
Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950
|||| ||||| ||||||||||| ||||| | ||| ||||| ||||||||||| | ||
Sbjct 22563167 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTA 22563108
Query 7951 GCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGAT 8010
|| | ||| | | ||| |||| ||| ||| | ||| | |||||| || |||
Sbjct 22563107 GCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACAGAT 22563048
Query 8011 TGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAAC 8070
||||| || || |||||||| || || || ||||| || | |||||| | || ||| |||
Sbjct 22563047 TGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGTGAAC 22562988
Query 8071 CAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTTAAAC 8130
|||| | ||| || || | | ||| | ||||||||| | | | | |||||||||
Sbjct 22562987 CAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAAA 22562928
Query 8131 GATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTC 8190
||||| ||||||||||||| ||||| || |||||||| || ||||||||||| |||
Sbjct 22562927 CTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATAAGTC 22562868
Query 8191 TCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCTG 8250
||||| ||||||||||| | ||||| | || ||| || | |||||| || || |||
Sbjct 22562867 TCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTCCCTG 22562808
Query 8251 ATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACATA 8310
|| | | ||| || || || ||||| |||||||||||||| || || || ||||| | |
Sbjct 22562807 ATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAATACA 22562748
Query 8311 CCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACG 8370
|| ||||| ||| ||| || || ||||||||||| |||||||||||||| ||||||||
Sbjct 22562747 CCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGAATACA 22562688
Query 8371 AACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGA 8430
| ||| ||||| || |||||||| || |||| |||||| ||||||||||| || |||
Sbjct 22562687 ATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGA 22562628
Query 8431 CCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTACA 8490
|||| || || | ||||| || ||| |||||| | || ||||| |||||| |||
Sbjct 22562627 CCAATAGGGTAAATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATATGCAACA 22562568
Query 8491 CAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAAGCA 8550
||||| || | |||||| | ||| | | ||||||| | |||||| ||| |
Sbjct 22562567 GCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATATAACAA 22562508
Query 8551 GAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACCAC 8610
| | |||| | |||||| | | || | || ||| ||||| || || || ||||||
Sbjct 22562507 GCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCAC 22562448
Query 8611 TCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGAT 8670
||||| | | |||||||||||||| || || ||||| ||||| || || ||||
Sbjct 22562447 TCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGTA 22562388
Query 8671 GGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCA 8730
|||| | ||||||||||| || |||||||| || | || ||||| | |||||| |||
Sbjct 22562387 GGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAACAGGCTCA 22562328
Query 8731 CGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAGCA 8790
|||||||| || ||||| || || || ||||| || || || | ||||| || ||
Sbjct 22562327 CGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACAGAAGTT 22562268
Query 8791 GCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAGTCTGTTGTTT 8850
|| | || ||| ||| ||||| | ||| || ||||| |||| ||||| | ||| |
Sbjct 22562267 GCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGGTTTTCG 22562208
Query 8851 GTACTTGTAACCCACTCGCAAAA 8873
|| || || | ||| | ||| ||
Sbjct 22562207 GTGCTAGTTATCCAGTTGCAGAA 22562185
Score = 143 bits (158), Expect = 3e-29
Identities = 217/309 (70%), Gaps = 0/309 (0%)
Strand=Plus/Minus
Query 8565 GAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACCACTCATCTAATGTGGC 8624
|||||| | | || | || ||| ||||| || || || ||||||||||| | | ||
Sbjct 22562169 GAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCACTCATCAACAGATGC 22562110
Query 8625 AGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGATGGAACGACAGCACC 8684
|||||||||||| || || |||| ||||| || || |||| |||| | |||||
Sbjct 22562109 AGCTTCCCAAATTGGGTAAAAGTTCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACC 22562050
Query 8685 AGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCACGAATACCGTCGAT 8744
|||||| || |||||||| || | || ||||| | |||| | |||||||| | || ||
Sbjct 22562049 AGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAACATGCCCACGAATATCATCAAT 22561990
Query 8745 ATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAGCAGCAGCTAACAAGCA 8804
||| || || || ||||| || || || | ||||| || || || | || |||
Sbjct 22561989 ATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACAGAAGTTGCGGTCAATAAGGT 22561930
Query 8805 AGGAATCATTAGAACTCCAAACCAACCGACATAAAGTCTGTTGTTTGTACTTGTAACCCA 8864
||| ||||| | ||| || ||||| |||| ||||| | ||| | || || || | |||
Sbjct 22561929 AGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGGTTTTCGGTGCTAGTTATCCA 22561870
Query 8865 CTCGCAAAA 8873
| ||| ||
Sbjct 22561869 GTTGCAGAA 22561861
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 615787819063360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |