Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21]
9,688 sequences; 362,063,720 total letters
Query= NC_020865.1
Length=45730
Score E
Sequences producing significant alignments: (Bits) Value
seq10 506 6e-139
seq8 506 6e-139
seq7 506 6e-139
>seq10
Length=17164355
Score = 506 bits (560), Expect = 6e-139
Identities = 688/957 (72%), Gaps = 2/957 (0%)
Strand=Plus/Plus
Query 41261 AACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTG-CCGCTAC 41319
||||||||||| | ||||||||||| || | |||| ||| | ||| ||| |||| ||
Sbjct 15960393 AACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGA-TCCCTACCTTATTGACCGCAAC 15960451
Query 41320 AACTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGAGA 41379
|| |||||||||||||| | | || || || || || || ||||| || || ||
Sbjct 15960452 TTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGA 15960511
Query 41380 ACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCGAG 41439
|| || |||| || | | || || ||||| || || || || ||| | |||| |
Sbjct 15960512 GCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCTGGTGCCATTATTCCTAC 15960571
Query 41440 CAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATG 41499
| || |||||| | ||||| |||||||||||||||||||| | ||||||| ||
Sbjct 15960572 TTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTG 15960631
Query 41500 GCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCTTTGC 41559
| | ||||| |||||||| | | || | || | |||||| | |||| || |
Sbjct 15960632 GTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 15960691
Query 41560 TTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGT 41619
||| ||||| || ||||||||||| || | || || || ||| | || ||||| |||
Sbjct 15960692 TTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGT 15960751
Query 41620 TGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACA 41679
||| || || |||||||| || ||||| || ||||| ||| | |||| || |||| ||
Sbjct 15960752 TGCATATTCAGCTCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATTTACCCTATTGGTCA 15960811
Query 41680 GGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGT 41739
|| ||| ||||||| |||||| || || ||||| || || ||||||| ||| | ||
Sbjct 15960812 AGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGT 15960871
Query 41740 GTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGT 41799
|||||||| ||||| || || ||||||||||| ||||||||| | ||||| || || ||
Sbjct 15960872 ATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGT 15960931
Query 41800 ATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATTCG 41859
||| || || | ||| ||||||||| ||| | |||| || || | || |
Sbjct 15960932 ATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAG 15960991
Query 41860 TGAGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAGAC 41919
|| || |||||| | | || || | ||||||| ||||||||||||||||||||
Sbjct 15960992 GGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGAC 15961051
Query 41920 TTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTT 41979
||| |||||||| || ||||| || |||||||| || | ||||||||||||||||| ||
Sbjct 15961052 TTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTT 15961111
Query 41980 TAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTT 42039
||| || || ||| | | || ||||| | ||||| |||||||| ||||| ||||||||
Sbjct 15961112 TAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTT 15961171
Query 42040 TGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATC 42099
|||| | || | ||| ||||||||||| | || || ||||| || ||||||||
Sbjct 15961172 CACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAATC 15961231
Query 42100 TCTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTTAACCGTGCCAA 42159
| | | | | | || | || || || || |||||||| || | |||||||| ||
Sbjct 15961232 TGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAA 15961291
Query 42160 CCTTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACTTCCCGCTTGACCTTGC 42216
||||| | || || ||||| || || || || ||||||||||| || ||||| ||
Sbjct 15961292 TCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 15961348
>seq8
Length=23026653
Score = 506 bits (560), Expect = 6e-139
Identities = 688/957 (72%), Gaps = 2/957 (0%)
Strand=Plus/Plus
Query 41261 AACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTG-CCGCTAC 41319
||||||||||| | ||||||||||| || | |||| ||| | ||| ||| |||| ||
Sbjct 17290483 AACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGA-TCCCTACCTTATTGACCGCAAC 17290541
Query 41320 AACTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGAGA 41379
|| |||||||||||||| | | || || || || || || ||||| || || ||
Sbjct 17290542 TTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGA 17290601
Query 41380 ACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCGAG 41439
|| || |||| || | | || || ||||| || || || || ||| | |||| |
Sbjct 17290602 GCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCTGGTGCCATTATTCCTAC 17290661
Query 41440 CAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATG 41499
| || |||||| | ||||| |||||||||||||||||||| | ||||||| ||
Sbjct 17290662 TTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTG 17290721
Query 41500 GCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCTTTGC 41559
| | ||||| |||||||| | | || | || | |||||| | |||| || |
Sbjct 17290722 GTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 17290781
Query 41560 TTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGT 41619
||| ||||| || ||||||||||| || | || || || ||| | || ||||| |||
Sbjct 17290782 TTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGT 17290841
Query 41620 TGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACA 41679
||| || || |||||||| || ||||| || ||||| ||| | |||| || |||| ||
Sbjct 17290842 TGCATATTCAGCTCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATTTACCCTATTGGTCA 17290901
Query 41680 GGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGT 41739
|| ||| ||||||| |||||| || || ||||| || || ||||||| ||| | ||
Sbjct 17290902 AGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGT 17290961
Query 41740 GTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGT 41799
|||||||| ||||| || || ||||||||||| ||||||||| | ||||| || || ||
Sbjct 17290962 ATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGT 17291021
Query 41800 ATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATTCG 41859
||| || || | ||| ||||||||| ||| | |||| || || | || |
Sbjct 17291022 ATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAG 17291081
Query 41860 TGAGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAGAC 41919
|| || |||||| | | || || | ||||||| ||||||||||||||||||||
Sbjct 17291082 GGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGAC 17291141
Query 41920 TTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTT 41979
||| |||||||| || ||||| || |||||||| || | ||||||||||||||||| ||
Sbjct 17291142 TTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTT 17291201
Query 41980 TAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTT 42039
||| || || ||| | | || ||||| | ||||| |||||||| ||||| ||||||||
Sbjct 17291202 TAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTT 17291261
Query 42040 TGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATC 42099
|||| | || | ||| ||||||||||| | || || ||||| || ||||||||
Sbjct 17291262 CACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAATC 17291321
Query 42100 TCTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTTAACCGTGCCAA 42159
| | | | | | || | || || || || |||||||| || | |||||||| ||
Sbjct 17291322 TGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAA 17291381
Query 42160 CCTTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACTTCCCGCTTGACCTTGC 42216
||||| | || || ||||| || || || || ||||||||||| || ||||| ||
Sbjct 17291382 TCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 17291438
Score = 147 bits (162), Expect = 6e-31
Identities = 124/150 (83%), Gaps = 2/150 (1%)
Strand=Plus/Plus
Query 41891 GGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTT 41950
|||||||| ||||||||||||||||||||||| |||||| | || ||||| || ||||||
Sbjct 13113499 GGTTACAAATTTGGTCAAGAGGAAGAGACTTATAATATTATGGCCGCTCATGGTTATTTT 13113558
Query 41951 GGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTT 42010
|| || | ||||||||||||||||| ||||| || || ||| | | || || ||||||
Sbjct 13113559 GGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTT-TTTCTT 13113617
Query 42011 -GCTGCCTGGCCTGTTGTAGGTATTTGGTT 42039
||||| |||| ||| ||||| ||||||||
Sbjct 13113618 GGCTGCTTGGCATGTAGTAGGGATTTGGTT 13113647
>seq7
Length=26479886
Score = 506 bits (560), Expect = 6e-139
Identities = 688/957 (72%), Gaps = 2/957 (0%)
Strand=Plus/Plus
Query 41261 AACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTG-CCGCTAC 41319
||||||||||| | ||||||||||| || | |||| ||| | ||| ||| |||| ||
Sbjct 22562212 AACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGA-TCCCTACCTTATTGACCGCAAC 22562270
Query 41320 AACTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGAGA 41379
|| |||||||||||||| | | || || || || || || ||||| || || ||
Sbjct 22562271 TTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGA 22562330
Query 41380 ACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCGAG 41439
|| || |||| || | | || || ||||| || || || || ||| | |||| |
Sbjct 22562331 GCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCTGGTGCCATTATTCCTAC 22562390
Query 41440 CAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATG 41499
| || |||||| | ||||| |||||||||||||||||||| | ||||||| ||
Sbjct 22562391 TTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTG 22562450
Query 41500 GCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCTTTGC 41559
| | ||||| |||||||| | | || | || | |||||| | |||| || |
Sbjct 22562451 GTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 22562510
Query 41560 TTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGT 41619
||| ||||| || ||||||||||| || | || || || ||| | || ||||| |||
Sbjct 22562511 TTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGT 22562570
Query 41620 TGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACA 41679
||| || || |||||||| || ||||| || ||||| ||| | |||| || |||| ||
Sbjct 22562571 TGCATATTCAGCTCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATTTACCCTATTGGTCA 22562630
Query 41680 GGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGT 41739
|| ||| ||||||| |||||| || || ||||| || || ||||||| ||| | ||
Sbjct 22562631 AGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGT 22562690
Query 41740 GTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGT 41799
|||||||| ||||| || || ||||||||||| ||||||||| | ||||| || || ||
Sbjct 22562691 ATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGT 22562750
Query 41800 ATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATTCG 41859
||| || || | ||| ||||||||| ||| | |||| || || | || |
Sbjct 22562751 ATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAG 22562810
Query 41860 TGAGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAGAC 41919
|| || |||||| | | || || | ||||||| ||||||||||||||||||||
Sbjct 22562811 GGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGAC 22562870
Query 41920 TTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTT 41979
||| |||||||| || ||||| || |||||||| || | ||||||||||||||||| ||
Sbjct 22562871 TTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTT 22562930
Query 41980 TAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTT 42039
||| || || ||| | | || ||||| | ||||| |||||||| ||||| ||||||||
Sbjct 22562931 TAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTT 22562990
Query 42040 TGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATC 42099
|||| | || | ||| ||||||||||| | || || ||||| || ||||||||
Sbjct 22562991 CACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAATC 22563050
Query 42100 TCTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTTAACCGTGCCAA 42159
| | | | | | || | || || || || |||||||| || | |||||||| ||
Sbjct 22563051 TGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAA 22563110
Query 42160 CCTTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACTTCCCGCTTGACCTTGC 42216
||||| | || || ||||| || || || || ||||||||||| || ||||| ||
Sbjct 22563111 TCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 22563167
Score = 111 bits (122), Expect = 5e-20
Identities = 181/258 (70%), Gaps = 2/258 (1%)
Strand=Plus/Plus
Query 41261 AACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTG-CCGCTAC 41319
||||||||||| | ||||||||||| || | |||| ||| | ||| ||| |||| ||
Sbjct 22561888 AACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGA-TCCCTACCTTATTGACCGCAAC 22561946
Query 41320 AACTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGAGA 41379
|| |||||||||||||| | | || || || || || || |||| || || |
Sbjct 22561947 TTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGATATTCGTGG 22562006
Query 41380 ACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCGAG 41439
| || |||| || | | || || ||||| || || || || ||| | |||| |
Sbjct 22562007 GCATGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCTGGTGCCATTATTCCTAC 22562066
Query 41440 CAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATG 41499
| || |||||| | |||| |||||||||||||||||||| | ||||||| ||
Sbjct 22562067 TTCTGCGGCGATCGGATTGAACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTG 22562126
Query 41500 GCTGTACAACGGCGGTCC 41517
| | ||||| ||||||||
Sbjct 22562127 GTTATACAATGGCGGTCC 22562144
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 146197578764352
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