Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21] 9,688 sequences; 362,063,720 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq10 506 6e-139 seq8 506 6e-139 seq7 506 6e-139 >seq10 Length=17164355 Score = 506 bits (560), Expect = 6e-139 Identities = 688/957 (72%), Gaps = 2/957 (0%) Strand=Plus/Plus Query 41261 AACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTG-CCGCTAC 41319 ||||||||||| | ||||||||||| || | |||| ||| | ||| ||| |||| || Sbjct 15960393 AACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGA-TCCCTACCTTATTGACCGCAAC 15960451 Query 41320 AACTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGAGA 41379 || |||||||||||||| | | || || || || || || ||||| || || || Sbjct 15960452 TTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGA 15960511 Query 41380 ACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCGAG 41439 || || |||| || | | || || ||||| || || || || ||| | |||| | Sbjct 15960512 GCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCTGGTGCCATTATTCCTAC 15960571 Query 41440 CAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATG 41499 | || |||||| | ||||| |||||||||||||||||||| | ||||||| || Sbjct 15960572 TTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTG 15960631 Query 41500 GCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCTTTGC 41559 | | ||||| |||||||| | | || | || | |||||| | |||| || | Sbjct 15960632 GTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 15960691 Query 41560 TTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGT 41619 ||| ||||| || ||||||||||| || | || || || ||| | || ||||| ||| Sbjct 15960692 TTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGT 15960751 Query 41620 TGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACA 41679 ||| || || |||||||| || ||||| || ||||| ||| | |||| || |||| || Sbjct 15960752 TGCATATTCAGCTCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATTTACCCTATTGGTCA 15960811 Query 41680 GGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGT 41739 || ||| ||||||| |||||| || || ||||| || || ||||||| ||| | || Sbjct 15960812 AGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGT 15960871 Query 41740 GTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGT 41799 |||||||| ||||| || || ||||||||||| ||||||||| | ||||| || || || Sbjct 15960872 ATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGT 15960931 Query 41800 ATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATTCG 41859 ||| || || | ||| ||||||||| ||| | |||| || || | || | Sbjct 15960932 ATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAG 15960991 Query 41860 TGAGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAGAC 41919 || || |||||| | | || || | ||||||| |||||||||||||||||||| Sbjct 15960992 GGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGAC 15961051 Query 41920 TTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTT 41979 ||| |||||||| || ||||| || |||||||| || | ||||||||||||||||| || Sbjct 15961052 TTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTT 15961111 Query 41980 TAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTT 42039 ||| || || ||| | | || ||||| | ||||| |||||||| ||||| |||||||| Sbjct 15961112 TAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTT 15961171 Query 42040 TGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATC 42099 |||| | || | ||| ||||||||||| | || || ||||| || |||||||| Sbjct 15961172 CACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAATC 15961231 Query 42100 TCTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTTAACCGTGCCAA 42159 | | | | | | || | || || || || |||||||| || | |||||||| || Sbjct 15961232 TGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAA 15961291 Query 42160 CCTTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACTTCCCGCTTGACCTTGC 42216 ||||| | || || ||||| || || || || ||||||||||| || ||||| || Sbjct 15961292 TCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 15961348 >seq8 Length=23026653 Score = 506 bits (560), Expect = 6e-139 Identities = 688/957 (72%), Gaps = 2/957 (0%) Strand=Plus/Plus Query 41261 AACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTG-CCGCTAC 41319 ||||||||||| | ||||||||||| || | |||| ||| | ||| ||| |||| || Sbjct 17290483 AACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGA-TCCCTACCTTATTGACCGCAAC 17290541 Query 41320 AACTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGAGA 41379 || |||||||||||||| | | || || || || || || ||||| || || || Sbjct 17290542 TTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGA 17290601 Query 41380 ACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCGAG 41439 || || |||| || | | || || ||||| || || || || ||| | |||| | Sbjct 17290602 GCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCTGGTGCCATTATTCCTAC 17290661 Query 41440 CAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATG 41499 | || |||||| | ||||| |||||||||||||||||||| | ||||||| || Sbjct 17290662 TTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTG 17290721 Query 41500 GCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCTTTGC 41559 | | ||||| |||||||| | | || | || | |||||| | |||| || | Sbjct 17290722 GTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 17290781 Query 41560 TTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGT 41619 ||| ||||| || ||||||||||| || | || || || ||| | || ||||| ||| Sbjct 17290782 TTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGT 17290841 Query 41620 TGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACA 41679 ||| || || |||||||| || ||||| || ||||| ||| | |||| || |||| || Sbjct 17290842 TGCATATTCAGCTCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATTTACCCTATTGGTCA 17290901 Query 41680 GGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGT 41739 || ||| ||||||| |||||| || || ||||| || || ||||||| ||| | || Sbjct 17290902 AGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGT 17290961 Query 41740 GTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGT 41799 |||||||| ||||| || || ||||||||||| ||||||||| | ||||| || || || Sbjct 17290962 ATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGT 17291021 Query 41800 ATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATTCG 41859 ||| || || | ||| ||||||||| ||| | |||| || || | || | Sbjct 17291022 ATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAG 17291081 Query 41860 TGAGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAGAC 41919 || || |||||| | | || || | ||||||| |||||||||||||||||||| Sbjct 17291082 GGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGAC 17291141 Query 41920 TTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTT 41979 ||| |||||||| || ||||| || |||||||| || | ||||||||||||||||| || Sbjct 17291142 TTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTT 17291201 Query 41980 TAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTT 42039 ||| || || ||| | | || ||||| | ||||| |||||||| ||||| |||||||| Sbjct 17291202 TAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTT 17291261 Query 42040 TGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATC 42099 |||| | || | ||| ||||||||||| | || || ||||| || |||||||| Sbjct 17291262 CACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAATC 17291321 Query 42100 TCTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTTAACCGTGCCAA 42159 | | | | | | || | || || || || |||||||| || | |||||||| || Sbjct 17291322 TGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAA 17291381 Query 42160 CCTTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACTTCCCGCTTGACCTTGC 42216 ||||| | || || ||||| || || || || ||||||||||| || ||||| || Sbjct 17291382 TCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 17291438 Score = 147 bits (162), Expect = 6e-31 Identities = 124/150 (83%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 41891 GGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTT 41950 |||||||| ||||||||||||||||||||||| |||||| | || ||||| || |||||| Sbjct 13113499 GGTTACAAATTTGGTCAAGAGGAAGAGACTTATAATATTATGGCCGCTCATGGTTATTTT 13113558 Query 41951 GGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTT 42010 || || | ||||||||||||||||| ||||| || || ||| | | || || |||||| Sbjct 13113559 GGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTT-TTTCTT 13113617 Query 42011 -GCTGCCTGGCCTGTTGTAGGTATTTGGTT 42039 ||||| |||| ||| ||||| |||||||| Sbjct 13113618 GGCTGCTTGGCATGTAGTAGGGATTTGGTT 13113647 >seq7 Length=26479886 Score = 506 bits (560), Expect = 6e-139 Identities = 688/957 (72%), Gaps = 2/957 (0%) Strand=Plus/Plus Query 41261 AACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTG-CCGCTAC 41319 ||||||||||| | ||||||||||| || | |||| ||| | ||| ||| |||| || Sbjct 22562212 AACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGA-TCCCTACCTTATTGACCGCAAC 22562270 Query 41320 AACTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGAGA 41379 || |||||||||||||| | | || || || || || || ||||| || || || Sbjct 22562271 TTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGA 22562330 Query 41380 ACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCGAG 41439 || || |||| || | | || || ||||| || || || || ||| | |||| | Sbjct 22562331 GCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCTGGTGCCATTATTCCTAC 22562390 Query 41440 CAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATG 41499 | || |||||| | ||||| |||||||||||||||||||| | ||||||| || Sbjct 22562391 TTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTG 22562450 Query 41500 GCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCTTTGC 41559 | | ||||| |||||||| | | || | || | |||||| | |||| || | Sbjct 22562451 GTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 22562510 Query 41560 TTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGT 41619 ||| ||||| || ||||||||||| || | || || || ||| | || ||||| ||| Sbjct 22562511 TTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGT 22562570 Query 41620 TGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACA 41679 ||| || || |||||||| || ||||| || ||||| ||| | |||| || |||| || Sbjct 22562571 TGCATATTCAGCTCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATTTACCCTATTGGTCA 22562630 Query 41680 GGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGT 41739 || ||| ||||||| |||||| || || ||||| || || ||||||| ||| | || Sbjct 22562631 AGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGT 22562690 Query 41740 GTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGT 41799 |||||||| ||||| || || ||||||||||| ||||||||| | ||||| || || || Sbjct 22562691 ATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGT 22562750 Query 41800 ATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATTCG 41859 ||| || || | ||| ||||||||| ||| | |||| || || | || | Sbjct 22562751 ATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAG 22562810 Query 41860 TGAGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAGAC 41919 || || |||||| | | || || | ||||||| |||||||||||||||||||| Sbjct 22562811 GGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGAC 22562870 Query 41920 TTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTT 41979 ||| |||||||| || ||||| || |||||||| || | ||||||||||||||||| || Sbjct 22562871 TTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTT 22562930 Query 41980 TAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTT 42039 ||| || || ||| | | || ||||| | ||||| |||||||| ||||| |||||||| Sbjct 22562931 TAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTT 22562990 Query 42040 TGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATC 42099 |||| | || | ||| ||||||||||| | || || ||||| || |||||||| Sbjct 22562991 CACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAATC 22563050 Query 42100 TCTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTTAACCGTGCCAA 42159 | | | | | | || | || || || || |||||||| || | |||||||| || Sbjct 22563051 TGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAA 22563110 Query 42160 CCTTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACTTCCCGCTTGACCTTGC 42216 ||||| | || || ||||| || || || || ||||||||||| || ||||| || Sbjct 22563111 TCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 22563167 Score = 111 bits (122), Expect = 5e-20 Identities = 181/258 (70%), Gaps = 2/258 (1%) Strand=Plus/Plus Query 41261 AACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTG-CCGCTAC 41319 ||||||||||| | ||||||||||| || | |||| ||| | ||| ||| |||| || Sbjct 22561888 AACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGA-TCCCTACCTTATTGACCGCAAC 22561946 Query 41320 AACTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGAGA 41379 || |||||||||||||| | | || || || || || || |||| || || | Sbjct 22561947 TTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGATATTCGTGG 22562006 Query 41380 ACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCGAG 41439 | || |||| || | | || || ||||| || || || || ||| | |||| | Sbjct 22562007 GCATGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCTGGTGCCATTATTCCTAC 22562066 Query 41440 CAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATG 41499 | || |||||| | |||| |||||||||||||||||||| | ||||||| || Sbjct 22562067 TTCTGCGGCGATCGGATTGAACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTG 22562126 Query 41500 GCTGTACAACGGCGGTCC 41517 | | ||||| |||||||| Sbjct 22562127 GTTATACAATGGCGGTCC 22562144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146197578764352