Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21]
9,688 sequences; 362,063,720 total letters
Query= NC_020874.1
Length=46198
Score E
Sequences producing significant alignments: (Bits) Value
seq10 506 6e-139
seq8 506 6e-139
seq7 506 6e-139
>seq10
Length=17164355
Score = 506 bits (560), Expect = 6e-139
Identities = 701/976 (72%), Gaps = 4/976 (0%)
Strand=Plus/Minus
Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936
|||| ||| || || ||||| ||||||||||| |||||||| ||||| | || || |||
Sbjct 15961348 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTA 15961289
Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAAC-ATCTACTACTGA 25995
|| ||||| | | ||||||||| ||| || || | | || | ||| ||||| ||
Sbjct 15961288 GCACGGTTGATGATATCAGCCCAAGTAT-TAATAACGCGACCTTGGCTATCAACTACAGA 15961230
Query 25996 CTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAG 26055
||||| || || || || ||||| || || ||||| || | ||||| | || || |
Sbjct 15961229 TTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGTGAA 15961170
Query 26056 CCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAA 26115
||| || || || || ||||||| ||| | ||||| || | |||||| ||| |||||
Sbjct 15961169 CCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAA 15961110
Query 26116 ACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGT 26175
||| ||||| || || ||||||| ||||| || || || || || ||||||||||| ||
Sbjct 15961109 ACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATAAGT 15961050
Query 26176 CTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGC 26235
|||||| ||||| ||||| | || || | ||| || | | || || |||||
Sbjct 15961049 CTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTCCCT 15960990
Query 26236 AATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAAC 26295
|| | || || ||||| || ||||||||| ||| || | || ||||| ||
Sbjct 15960989 GATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAATAC 15960930
Query 26296 CCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATAC 26355
||||| ||||| ||| || ||||| ||||| || || ||||| ||||| ||||||||
Sbjct 15960929 ACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGAATAC 15960870
Query 26356 GAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTG 26415
| ||||||||| ||||||||||| || || | |||||| |||||| ||||| |||||
Sbjct 15960869 AATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCTTG 15960810
Query 26416 TCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAAC 26475
|| | ||| |||| ||||| || ||| ||| || | | || |||| |||||||||
Sbjct 15960809 ACCAATAGGGTAAATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATATGCAAC 15960750
Query 26476 AAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGC 26535
| ||||| || | ||| || || | | || |||||||||| | || |||
Sbjct 15960749 AGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATATAACA 15960690
Query 26536 TGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCA 26595
||||| || | ||||||||| | | ||| || | ||| || ||||||||||||| |||
Sbjct 15960689 AGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCA 15960630
Query 26596 CTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGA 26655
||| || | | |||||||||| || |||||||| || | |||||| || ||| |
Sbjct 15960629 CTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGT 15960570
Query 26656 GGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTC 26715
|| | | || || || || |||||||||||||| | ||| || || ||||| |||||
Sbjct 15960569 AGGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAACAGGCTC 15960510
Query 26716 ACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAG 26774
||| || ||||| |||||||| || || || ||||||||||| | ||||| ||| | ||
Sbjct 15960509 ACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACA-GAAG 15960451
Query 26775 TGGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCT 26834
| || | | |||| || ||||| | || ||||||||||| | || |||||||| |
Sbjct 15960450 TTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGGTTTT 15960391
Query 26835 CAGTACTTGTAACCCA 26850
| || || || | |||
Sbjct 15960390 CGGTGCTAGTTATCCA 15960375
>seq8
Length=23026653
Score = 506 bits (560), Expect = 6e-139
Identities = 701/976 (72%), Gaps = 4/976 (0%)
Strand=Plus/Minus
Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936
|||| ||| || || ||||| ||||||||||| |||||||| ||||| | || || |||
Sbjct 17291438 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTA 17291379
Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAAC-ATCTACTACTGA 25995
|| ||||| | | ||||||||| ||| || || | | || | ||| ||||| ||
Sbjct 17291378 GCACGGTTGATGATATCAGCCCAAGTAT-TAATAACGCGACCTTGGCTATCAACTACAGA 17291320
Query 25996 CTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAG 26055
||||| || || || || ||||| || || ||||| || | ||||| | || || |
Sbjct 17291319 TTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGTGAA 17291260
Query 26056 CCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAA 26115
||| || || || || ||||||| ||| | ||||| || | |||||| ||| |||||
Sbjct 17291259 CCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAA 17291200
Query 26116 ACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGT 26175
||| ||||| || || ||||||| ||||| || || || || || ||||||||||| ||
Sbjct 17291199 ACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATAAGT 17291140
Query 26176 CTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGC 26235
|||||| ||||| ||||| | || || | ||| || | | || || |||||
Sbjct 17291139 CTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTCCCT 17291080
Query 26236 AATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAAC 26295
|| | || || ||||| || ||||||||| ||| || | || ||||| ||
Sbjct 17291079 GATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAATAC 17291020
Query 26296 CCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATAC 26355
||||| ||||| ||| || ||||| ||||| || || ||||| ||||| ||||||||
Sbjct 17291019 ACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGAATAC 17290960
Query 26356 GAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTG 26415
| ||||||||| ||||||||||| || || | |||||| |||||| ||||| |||||
Sbjct 17290959 AATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCTTG 17290900
Query 26416 TCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAAC 26475
|| | ||| |||| ||||| || ||| ||| || | | || |||| |||||||||
Sbjct 17290899 ACCAATAGGGTAAATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATATGCAAC 17290840
Query 26476 AAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGC 26535
| ||||| || | ||| || || | | || |||||||||| | || |||
Sbjct 17290839 AGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATATAACA 17290780
Query 26536 TGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCA 26595
||||| || | ||||||||| | | ||| || | ||| || ||||||||||||| |||
Sbjct 17290779 AGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCA 17290720
Query 26596 CTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGA 26655
||| || | | |||||||||| || |||||||| || | |||||| || ||| |
Sbjct 17290719 CTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGT 17290660
Query 26656 GGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTC 26715
|| | | || || || || |||||||||||||| | ||| || || ||||| |||||
Sbjct 17290659 AGGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAACAGGCTC 17290600
Query 26716 ACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAG 26774
||| || ||||| |||||||| || || || ||||||||||| | ||||| ||| | ||
Sbjct 17290599 ACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACA-GAAG 17290541
Query 26775 TGGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCT 26834
| || | | |||| || ||||| | || ||||||||||| | || |||||||| |
Sbjct 17290540 TTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGGTTTT 17290481
Query 26835 CAGTACTTGTAACCCA 26850
| || || || | |||
Sbjct 17290480 CGGTGCTAGTTATCCA 17290465
>seq7
Length=26479886
Score = 506 bits (560), Expect = 6e-139
Identities = 701/976 (72%), Gaps = 4/976 (0%)
Strand=Plus/Minus
Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936
|||| ||| || || ||||| ||||||||||| |||||||| ||||| | || || |||
Sbjct 22563167 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTA 22563108
Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAAC-ATCTACTACTGA 25995
|| ||||| | | ||||||||| ||| || || | | || | ||| ||||| ||
Sbjct 22563107 GCACGGTTGATGATATCAGCCCAAGTAT-TAATAACGCGACCTTGGCTATCAACTACAGA 22563049
Query 25996 CTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAG 26055
||||| || || || || ||||| || || ||||| || | ||||| | || || |
Sbjct 22563048 TTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGTGAA 22562989
Query 26056 CCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAA 26115
||| || || || || ||||||| ||| | ||||| || | |||||| ||| |||||
Sbjct 22562988 CCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAA 22562929
Query 26116 ACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGT 26175
||| ||||| || || ||||||| ||||| || || || || || ||||||||||| ||
Sbjct 22562928 ACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATAAGT 22562869
Query 26176 CTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGC 26235
|||||| ||||| ||||| | || || | ||| || | | || || |||||
Sbjct 22562868 CTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTCCCT 22562809
Query 26236 AATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAAC 26295
|| | || || ||||| || ||||||||| ||| || | || ||||| ||
Sbjct 22562808 GATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAATAC 22562749
Query 26296 CCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATAC 26355
||||| ||||| ||| || ||||| ||||| || || ||||| ||||| ||||||||
Sbjct 22562748 ACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGAATAC 22562689
Query 26356 GAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTG 26415
| ||||||||| ||||||||||| || || | |||||| |||||| ||||| |||||
Sbjct 22562688 AATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCTTG 22562629
Query 26416 TCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAAC 26475
|| | ||| |||| ||||| || ||| ||| || | | || |||| |||||||||
Sbjct 22562628 ACCAATAGGGTAAATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATATGCAAC 22562569
Query 26476 AAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGC 26535
| ||||| || | ||| || || | | || |||||||||| | || |||
Sbjct 22562568 AGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATATAACA 22562509
Query 26536 TGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCA 26595
||||| || | ||||||||| | | ||| || | ||| || ||||||||||||| |||
Sbjct 22562508 AGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCA 22562449
Query 26596 CTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGA 26655
||| || | | |||||||||| || |||||||| || | |||||| || ||| |
Sbjct 22562448 CTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGT 22562389
Query 26656 GGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTC 26715
|| | | || || || || |||||||||||||| | ||| || || ||||| |||||
Sbjct 22562388 AGGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAACAGGCTC 22562329
Query 26716 ACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAG 26774
||| || ||||| |||||||| || || || ||||||||||| | ||||| ||| | ||
Sbjct 22562328 ACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACA-GAAG 22562270
Query 26775 TGGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCT 26834
| || | | |||| || ||||| | || ||||||||||| | || |||||||| |
Sbjct 22562269 TTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGGTTTT 22562210
Query 26835 CAGTACTTGTAACCCA 26850
| || || || | |||
Sbjct 22562209 CGGTGCTAGTTATCCA 22562194
Score = 167 bits (184), Expect = 7e-37
Identities = 222/306 (73%), Gaps = 2/306 (1%)
Strand=Plus/Minus
Query 26546 ATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCACTCGTCCAGT 26605
||||||||||| | | ||| || | ||| || ||||||||||||| |||||| || |
Sbjct 22562174 ATTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCACTCATCAACA 22562115
Query 26606 GTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAGGGGACGACT 26665
| |||||||||| || |||||||| | | |||||| || ||| | || | |
Sbjct 22562114 GATGCAGCTTCCCAAATTGGGTAAAAGTTCAATCCGATCGCCGCAGAAGTAGGAATAATG 22562055
Query 26666 GCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCACGTATGCCA 26725
|| || || || |||||||||||||| | ||| || || ||||| || |||| || ||
Sbjct 22562054 GCACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAACATGCCCACGAATATCA 22561995
Query 26726 TCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAGTGGCTGCGAG 26784
|| |||||||| || || || ||||||||||| | ||||| ||| | ||| || | |
Sbjct 22561994 TCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACA-GAAGTTGCGGTCAA 22561936
Query 26785 TAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCTCAGTACTTGT 26844
|||| || ||||| | || ||||||||||| | || |||||||| || || || ||
Sbjct 22561935 TAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGGTTTTCGGTGCTAGT 22561876
Query 26845 AACCCA 26850
| |||
Sbjct 22561875 TATCCA 22561870
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 147695006472960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |