Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21] 9,688 sequences; 362,063,720 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq10 506 6e-139 seq8 506 6e-139 seq7 506 6e-139 >seq10 Length=17164355 Score = 506 bits (560), Expect = 6e-139 Identities = 701/976 (72%), Gaps = 4/976 (0%) Strand=Plus/Minus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || ||||| ||||||||||| |||||||| ||||| | || || ||| Sbjct 15961348 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTA 15961289 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAAC-ATCTACTACTGA 25995 || ||||| | | ||||||||| ||| || || | | || | ||| ||||| || Sbjct 15961288 GCACGGTTGATGATATCAGCCCAAGTAT-TAATAACGCGACCTTGGCTATCAACTACAGA 15961230 Query 25996 CTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAG 26055 ||||| || || || || ||||| || || ||||| || | ||||| | || || | Sbjct 15961229 TTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGTGAA 15961170 Query 26056 CCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAA 26115 ||| || || || || ||||||| ||| | ||||| || | |||||| ||| ||||| Sbjct 15961169 CCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAA 15961110 Query 26116 ACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGT 26175 ||| ||||| || || ||||||| ||||| || || || || || ||||||||||| || Sbjct 15961109 ACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATAAGT 15961050 Query 26176 CTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGC 26235 |||||| ||||| ||||| | || || | ||| || | | || || ||||| Sbjct 15961049 CTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTCCCT 15960990 Query 26236 AATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAAC 26295 || | || || ||||| || ||||||||| ||| || | || ||||| || Sbjct 15960989 GATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAATAC 15960930 Query 26296 CCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATAC 26355 ||||| ||||| ||| || ||||| ||||| || || ||||| ||||| |||||||| Sbjct 15960929 ACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGAATAC 15960870 Query 26356 GAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTG 26415 | ||||||||| ||||||||||| || || | |||||| |||||| ||||| ||||| Sbjct 15960869 AATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCTTG 15960810 Query 26416 TCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAAC 26475 || | ||| |||| ||||| || ||| ||| || | | || |||| ||||||||| Sbjct 15960809 ACCAATAGGGTAAATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATATGCAAC 15960750 Query 26476 AAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGC 26535 | ||||| || | ||| || || | | || |||||||||| | || ||| Sbjct 15960749 AGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATATAACA 15960690 Query 26536 TGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCA 26595 ||||| || | ||||||||| | | ||| || | ||| || ||||||||||||| ||| Sbjct 15960689 AGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCA 15960630 Query 26596 CTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGA 26655 ||| || | | |||||||||| || |||||||| || | |||||| || ||| | Sbjct 15960629 CTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGT 15960570 Query 26656 GGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTC 26715 || | | || || || || |||||||||||||| | ||| || || ||||| ||||| Sbjct 15960569 AGGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAACAGGCTC 15960510 Query 26716 ACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAG 26774 ||| || ||||| |||||||| || || || ||||||||||| | ||||| ||| | || Sbjct 15960509 ACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACA-GAAG 15960451 Query 26775 TGGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCT 26834 | || | | |||| || ||||| | || ||||||||||| | || |||||||| | Sbjct 15960450 TTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGGTTTT 15960391 Query 26835 CAGTACTTGTAACCCA 26850 | || || || | ||| Sbjct 15960390 CGGTGCTAGTTATCCA 15960375 >seq8 Length=23026653 Score = 506 bits (560), Expect = 6e-139 Identities = 701/976 (72%), Gaps = 4/976 (0%) Strand=Plus/Minus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || ||||| ||||||||||| |||||||| ||||| | || || ||| Sbjct 17291438 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTA 17291379 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAAC-ATCTACTACTGA 25995 || ||||| | | ||||||||| ||| || || | | || | ||| ||||| || Sbjct 17291378 GCACGGTTGATGATATCAGCCCAAGTAT-TAATAACGCGACCTTGGCTATCAACTACAGA 17291320 Query 25996 CTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAG 26055 ||||| || || || || ||||| || || ||||| || | ||||| | || || | Sbjct 17291319 TTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGTGAA 17291260 Query 26056 CCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAA 26115 ||| || || || || ||||||| ||| | ||||| || | |||||| ||| ||||| Sbjct 17291259 CCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAA 17291200 Query 26116 ACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGT 26175 ||| ||||| || || ||||||| ||||| || || || || || ||||||||||| || Sbjct 17291199 ACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATAAGT 17291140 Query 26176 CTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGC 26235 |||||| ||||| ||||| | || || | ||| || | | || || ||||| Sbjct 17291139 CTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTCCCT 17291080 Query 26236 AATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAAC 26295 || | || || ||||| || ||||||||| ||| || | || ||||| || Sbjct 17291079 GATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAATAC 17291020 Query 26296 CCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATAC 26355 ||||| ||||| ||| || ||||| ||||| || || ||||| ||||| |||||||| Sbjct 17291019 ACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGAATAC 17290960 Query 26356 GAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTG 26415 | ||||||||| ||||||||||| || || | |||||| |||||| ||||| ||||| Sbjct 17290959 AATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCTTG 17290900 Query 26416 TCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAAC 26475 || | ||| |||| ||||| || ||| ||| || | | || |||| ||||||||| Sbjct 17290899 ACCAATAGGGTAAATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATATGCAAC 17290840 Query 26476 AAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGC 26535 | ||||| || | ||| || || | | || |||||||||| | || ||| Sbjct 17290839 AGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATATAACA 17290780 Query 26536 TGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCA 26595 ||||| || | ||||||||| | | ||| || | ||| || ||||||||||||| ||| Sbjct 17290779 AGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCA 17290720 Query 26596 CTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGA 26655 ||| || | | |||||||||| || |||||||| || | |||||| || ||| | Sbjct 17290719 CTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGT 17290660 Query 26656 GGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTC 26715 || | | || || || || |||||||||||||| | ||| || || ||||| ||||| Sbjct 17290659 AGGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAACAGGCTC 17290600 Query 26716 ACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAG 26774 ||| || ||||| |||||||| || || || ||||||||||| | ||||| ||| | || Sbjct 17290599 ACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACA-GAAG 17290541 Query 26775 TGGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCT 26834 | || | | |||| || ||||| | || ||||||||||| | || |||||||| | Sbjct 17290540 TTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGGTTTT 17290481 Query 26835 CAGTACTTGTAACCCA 26850 | || || || | ||| Sbjct 17290480 CGGTGCTAGTTATCCA 17290465 >seq7 Length=26479886 Score = 506 bits (560), Expect = 6e-139 Identities = 701/976 (72%), Gaps = 4/976 (0%) Strand=Plus/Minus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || ||||| ||||||||||| |||||||| ||||| | || || ||| Sbjct 22563167 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTA 22563108 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAAC-ATCTACTACTGA 25995 || ||||| | | ||||||||| ||| || || | | || | ||| ||||| || Sbjct 22563107 GCACGGTTGATGATATCAGCCCAAGTAT-TAATAACGCGACCTTGGCTATCAACTACAGA 22563049 Query 25996 CTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAG 26055 ||||| || || || || ||||| || || ||||| || | ||||| | || || | Sbjct 22563048 TTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGTGAA 22562989 Query 26056 CCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAA 26115 ||| || || || || ||||||| ||| | ||||| || | |||||| ||| ||||| Sbjct 22562988 CCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAA 22562929 Query 26116 ACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGT 26175 ||| ||||| || || ||||||| ||||| || || || || || ||||||||||| || Sbjct 22562928 ACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATAAGT 22562869 Query 26176 CTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGC 26235 |||||| ||||| ||||| | || || | ||| || | | || || ||||| Sbjct 22562868 CTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTCCCT 22562809 Query 26236 AATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAAC 26295 || | || || ||||| || ||||||||| ||| || | || ||||| || Sbjct 22562808 GATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAATAC 22562749 Query 26296 CCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATAC 26355 ||||| ||||| ||| || ||||| ||||| || || ||||| ||||| |||||||| Sbjct 22562748 ACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGAATAC 22562689 Query 26356 GAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTG 26415 | ||||||||| ||||||||||| || || | |||||| |||||| ||||| ||||| Sbjct 22562688 AATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCTTG 22562629 Query 26416 TCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAAC 26475 || | ||| |||| ||||| || ||| ||| || | | || |||| ||||||||| Sbjct 22562628 ACCAATAGGGTAAATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATATGCAAC 22562569 Query 26476 AAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGC 26535 | ||||| || | ||| || || | | || |||||||||| | || ||| Sbjct 22562568 AGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATATAACA 22562509 Query 26536 TGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCA 26595 ||||| || | ||||||||| | | ||| || | ||| || ||||||||||||| ||| Sbjct 22562508 AGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCA 22562449 Query 26596 CTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGA 26655 ||| || | | |||||||||| || |||||||| || | |||||| || ||| | Sbjct 22562448 CTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGT 22562389 Query 26656 GGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTC 26715 || | | || || || || |||||||||||||| | ||| || || ||||| ||||| Sbjct 22562388 AGGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAACAGGCTC 22562329 Query 26716 ACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAG 26774 ||| || ||||| |||||||| || || || ||||||||||| | ||||| ||| | || Sbjct 22562328 ACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACA-GAAG 22562270 Query 26775 TGGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCT 26834 | || | | |||| || ||||| | || ||||||||||| | || |||||||| | Sbjct 22562269 TTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGGTTTT 22562210 Query 26835 CAGTACTTGTAACCCA 26850 | || || || | ||| Sbjct 22562209 CGGTGCTAGTTATCCA 22562194 Score = 167 bits (184), Expect = 7e-37 Identities = 222/306 (73%), Gaps = 2/306 (1%) Strand=Plus/Minus Query 26546 ATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCACTCGTCCAGT 26605 ||||||||||| | | ||| || | ||| || ||||||||||||| |||||| || | Sbjct 22562174 ATTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCACTCATCAACA 22562115 Query 26606 GTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAGGGGACGACT 26665 | |||||||||| || |||||||| | | |||||| || ||| | || | | Sbjct 22562114 GATGCAGCTTCCCAAATTGGGTAAAAGTTCAATCCGATCGCCGCAGAAGTAGGAATAATG 22562055 Query 26666 GCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCACGTATGCCA 26725 || || || || |||||||||||||| | ||| || || ||||| || |||| || || Sbjct 22562054 GCACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAACATGCCCACGAATATCA 22561995 Query 26726 TCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAGTGGCTGCGAG 26784 || |||||||| || || || ||||||||||| | ||||| ||| | ||| || | | Sbjct 22561994 TCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACA-GAAGTTGCGGTCAA 22561936 Query 26785 TAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCTCAGTACTTGT 26844 |||| || ||||| | || ||||||||||| | || |||||||| || || || || Sbjct 22561935 TAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGGTTTTCGGTGCTAGT 22561876 Query 26845 AACCCA 26850 | ||| Sbjct 22561875 TATCCA 22561870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147695006472960