Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21]
9,688 sequences; 362,063,720 total letters
Query= NC_020875.1
Length=182801
Score E
Sequences producing significant alignments: (Bits) Value
seq10 616 2e-171
seq8 616 2e-171
seq7 616 2e-171
seq3 93.3 5e-14
>seq10
Length=17164355
Score = 616 bits (682), Expect = 2e-171
Identities = 733/990 (74%), Gaps = 8/990 (1%)
Strand=Plus/Plus
Query 154970 TCTGCCAGTGGGTAACTTCTGCTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTA 155029
||||| | ||| ||||| | || ||||| | || |||| |||||||||||| | |
Sbjct 15960367 TCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGA 15960426
Query 155030 TGATCCCTTGCCTCCTCGCTGCTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTC 155089
|||||||| | | | | || || | || ||| |||||||||| ||||| ||||
Sbjct 15960427 TGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTC 15960486
Query 155090 CTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACA 155149
| ||||| ||||||||||||||||| || || ||||||||||| | || || ||||| |
Sbjct 15960487 CAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATA 15960546
Query 155150 TCATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTT 155209
| ||||||||||| || | |||| ||| || || || | ||||| || || ||||
Sbjct 15960547 TTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTT 15960606
Query 155210 GGGAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCT 155269
||||||| ||| || ||||||||||||| |||||||| ||||||| | || | ||
Sbjct 15960607 GGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTC 15960666
Query 155270 TCCACTTCCTTATCGGAATCACAGCATACTGT---GGTCGTCAGTGGGAACTTTCTTACC 155326
| |||||| | | || | ||| | | | |||||| |||||||||| || ||
Sbjct 15960667 TACACTTCTTACTTGGTGT---AGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCC 15960723
Query 155327 GTCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCG 155386
|||| || |||||||||||||| ||||||||| || || || || | ||||| ||
Sbjct 15960724 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCG 15960783
Query 155387 CTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTA 155446
|||| ||| | |||| ||| | |||||||| ||||||||||| |||||| | || |
Sbjct 15960784 CTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAA 15960843
Query 155447 TCTCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACC 155506
| ||||||||||| |||| |||| | || ||||| ||||| || || ||||||||||| |
Sbjct 15960844 TATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATC 15960903
Query 155507 CCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACG 155566
| || |||||| | || ||||| ||||| ||||| || || || ||| ||||||||| |
Sbjct 15960904 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATG 15960963
Query 155567 GTTCATTGGTGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATG 155626
|||| ||||| || ||| | ||| | ||||| ||||| | || ||| || | |
Sbjct 15960964 GTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGG 15961023
Query 155627 GTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTCG 155686
|||||| || || ||||| ||||| |||||||| ||||| || |||||||| || || |
Sbjct 15961024 GTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTG 15961083
Query 155687 GTCGTCTTATCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTG 155746
| || | |||||||| ||||| || |||||||| | | | ||||||||| | |
Sbjct 15961084 GCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGG 15961143
Query 155747 CTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATTCA 155806
|||| |||||||| || | || ||| |||||| | ||| | || ||||| ||||
Sbjct 15961144 CTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCA 15961203
Query 155807 ACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGA-CGCTAGTGGTAAAGTCATCCCT 155865
| || ||||| ||||| |||||||| |||||||| || || | ||| || || |
Sbjct 15961204 ATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCA-AGGTCGCGTTATTAAT 15961262
Query 155866 ACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAAC 155925
|| ||||| || || | ||||| ||| |||||||||||||||||||||||| |||||
Sbjct 15961263 ACTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAAT 15961322
Query 155926 GCTCACAACTTCCCTCTTGACCTTGCTGCT 155955
||||||||||||||||| ||||| ||||||
Sbjct 15961323 GCTCACAACTTCCCTCTAGACCTAGCTGCT 15961352
>seq8
Length=23026653
Score = 616 bits (682), Expect = 2e-171
Identities = 733/990 (74%), Gaps = 8/990 (1%)
Strand=Plus/Plus
Query 154970 TCTGCCAGTGGGTAACTTCTGCTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTA 155029
||||| | ||| ||||| | || ||||| | || |||| |||||||||||| | |
Sbjct 17290457 TCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGA 17290516
Query 155030 TGATCCCTTGCCTCCTCGCTGCTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTC 155089
|||||||| | | | | || || | || ||| |||||||||| ||||| ||||
Sbjct 17290517 TGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTC 17290576
Query 155090 CTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACA 155149
| ||||| ||||||||||||||||| || || ||||||||||| | || || ||||| |
Sbjct 17290577 CAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATA 17290636
Query 155150 TCATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTT 155209
| ||||||||||| || | |||| ||| || || || | ||||| || || ||||
Sbjct 17290637 TTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTT 17290696
Query 155210 GGGAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCT 155269
||||||| ||| || ||||||||||||| |||||||| ||||||| | || | ||
Sbjct 17290697 GGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTC 17290756
Query 155270 TCCACTTCCTTATCGGAATCACAGCATACTGT---GGTCGTCAGTGGGAACTTTCTTACC 155326
| |||||| | | || | ||| | | | |||||| |||||||||| || ||
Sbjct 17290757 TACACTTCTTACTTGGTGT---AGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCC 17290813
Query 155327 GTCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCG 155386
|||| || |||||||||||||| ||||||||| || || || || | ||||| ||
Sbjct 17290814 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCG 17290873
Query 155387 CTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTA 155446
|||| ||| | |||| ||| | |||||||| ||||||||||| |||||| | || |
Sbjct 17290874 CTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAA 17290933
Query 155447 TCTCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACC 155506
| ||||||||||| |||| |||| | || ||||| ||||| || || ||||||||||| |
Sbjct 17290934 TATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATC 17290993
Query 155507 CCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACG 155566
| || |||||| | || ||||| ||||| ||||| || || || ||| ||||||||| |
Sbjct 17290994 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATG 17291053
Query 155567 GTTCATTGGTGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATG 155626
|||| ||||| || ||| | ||| | ||||| ||||| | || ||| || | |
Sbjct 17291054 GTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGG 17291113
Query 155627 GTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTCG 155686
|||||| || || ||||| ||||| |||||||| ||||| || |||||||| || || |
Sbjct 17291114 GTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTG 17291173
Query 155687 GTCGTCTTATCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTG 155746
| || | |||||||| ||||| || |||||||| | | | ||||||||| | |
Sbjct 17291174 GCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGG 17291233
Query 155747 CTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATTCA 155806
|||| |||||||| || | || ||| |||||| | ||| | || ||||| ||||
Sbjct 17291234 CTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCA 17291293
Query 155807 ACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGA-CGCTAGTGGTAAAGTCATCCCT 155865
| || ||||| ||||| |||||||| |||||||| || || | ||| || || |
Sbjct 17291294 ATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCA-AGGTCGCGTTATTAAT 17291352
Query 155866 ACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAAC 155925
|| ||||| || || | ||||| ||| |||||||||||||||||||||||| |||||
Sbjct 17291353 ACTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAAT 17291412
Query 155926 GCTCACAACTTCCCTCTTGACCTTGCTGCT 155955
||||||||||||||||| ||||| ||||||
Sbjct 17291413 GCTCACAACTTCCCTCTAGACCTAGCTGCT 17291442
>seq7
Length=26479886
Score = 616 bits (682), Expect = 2e-171
Identities = 733/990 (74%), Gaps = 8/990 (1%)
Strand=Plus/Plus
Query 154970 TCTGCCAGTGGGTAACTTCTGCTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTA 155029
||||| | ||| ||||| | || ||||| | || |||| |||||||||||| | |
Sbjct 22562186 TCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGA 22562245
Query 155030 TGATCCCTTGCCTCCTCGCTGCTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTC 155089
|||||||| | | | | || || | || ||| |||||||||| ||||| ||||
Sbjct 22562246 TGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTC 22562305
Query 155090 CTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACA 155149
| ||||| ||||||||||||||||| || || ||||||||||| | || || ||||| |
Sbjct 22562306 CAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATA 22562365
Query 155150 TCATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTT 155209
| ||||||||||| || | |||| ||| || || || | ||||| || || ||||
Sbjct 22562366 TTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTT 22562425
Query 155210 GGGAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCT 155269
||||||| ||| || ||||||||||||| |||||||| ||||||| | || | ||
Sbjct 22562426 GGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTC 22562485
Query 155270 TCCACTTCCTTATCGGAATCACAGCATACTGT---GGTCGTCAGTGGGAACTTTCTTACC 155326
| |||||| | | || | ||| | | | |||||| |||||||||| || ||
Sbjct 22562486 TACACTTCTTACTTGGTGT---AGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCC 22562542
Query 155327 GTCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCG 155386
|||| || |||||||||||||| ||||||||| || || || || | ||||| ||
Sbjct 22562543 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCG 22562602
Query 155387 CTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTA 155446
|||| ||| | |||| ||| | |||||||| ||||||||||| |||||| | || |
Sbjct 22562603 CTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAA 22562662
Query 155447 TCTCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACC 155506
| ||||||||||| |||| |||| | || ||||| ||||| || || ||||||||||| |
Sbjct 22562663 TATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATC 22562722
Query 155507 CCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACG 155566
| || |||||| | || ||||| ||||| ||||| || || || ||| ||||||||| |
Sbjct 22562723 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATG 22562782
Query 155567 GTTCATTGGTGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATG 155626
|||| ||||| || ||| | ||| | ||||| ||||| | || ||| || | |
Sbjct 22562783 GTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGG 22562842
Query 155627 GTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTCG 155686
|||||| || || ||||| ||||| |||||||| ||||| || |||||||| || || |
Sbjct 22562843 GTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTG 22562902
Query 155687 GTCGTCTTATCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTG 155746
| || | |||||||| ||||| || |||||||| | | | ||||||||| | |
Sbjct 22562903 GCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGG 22562962
Query 155747 CTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATTCA 155806
|||| |||||||| || | || ||| |||||| | ||| | || ||||| ||||
Sbjct 22562963 CTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCA 22563022
Query 155807 ACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGA-CGCTAGTGGTAAAGTCATCCCT 155865
| || ||||| ||||| |||||||| |||||||| || || | ||| || || |
Sbjct 22563023 ATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCA-AGGTCGCGTTATTAAT 22563081
Query 155866 ACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAAC 155925
|| ||||| || || | ||||| ||| |||||||||||||||||||||||| |||||
Sbjct 22563082 ACTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAAT 22563141
Query 155926 GCTCACAACTTCCCTCTTGACCTTGCTGCT 155955
||||||||||||||||| ||||| ||||||
Sbjct 22563142 GCTCACAACTTCCCTCTAGACCTAGCTGCT 22563171
Score = 181 bits (200), Expect = 1e-40
Identities = 211/285 (74%), Gaps = 0/285 (0%)
Strand=Plus/Plus
Query 154970 TCTGCCAGTGGGTAACTTCTGCTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTA 155029
||||| | ||| ||||| | || ||||| | || |||| |||||||||||| | |
Sbjct 22561862 TCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGA 22561921
Query 155030 TGATCCCTTGCCTCCTCGCTGCTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTC 155089
|||||||| | | | | || || | || ||| |||||||||| ||||| ||||
Sbjct 22561922 TGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTC 22561981
Query 155090 CTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACA 155149
| ||||| ||||||| |||||||| | || ||||||||||| | || || ||||| |
Sbjct 22561982 CAGTAGATATTGATGATATTCGTGGGCATGTTTCTGGTTCTTTACTTTACGGAAACAATA 22562041
Query 155150 TCATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTT 155209
| ||||||||||| || | |||| ||| || || || | |||| || || ||||
Sbjct 22562042 TTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGAACTTTTACCCAATTT 22562101
Query 155210 GGGAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTT 155254
||||||| ||| || ||||||||||||| |||||||| |||||||
Sbjct 22562102 GGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTT 22562146
>seq3
Length=46202548
Score = 93.3 bits (102), Expect = 5e-14
Identities = 119/160 (74%), Gaps = 3/160 (2%)
Strand=Plus/Minus
Query 155776 ACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCT 155835
|||||| | ||| | || ||||| ||||| || ||||| ||||| |||||||| |||
Sbjct 10578789 ACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCA-TCT 10578731
Query 155836 GTAGTAGAC-GCTAGTGGTAAAGTCATCCCTACATGGGCAGACATTCTTAACCGCGCTGG 155894
||||| || || | ||| || || ||| ||||| || || | ||||| ||
Sbjct 10578730 GTAGTTGATAGCCAA-GGTCGCGTTATTTATACTTGGGCTGATATCATCAACCGTGCAAA 10578672
Query 155895 TCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAAC 155934
||||| |||||||||||||||||| ||||| |||||| ||
Sbjct 10578671 TCTTGCTATGGAAGTAATGCACGAACGTAATGCTCACCAC 10578632
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 584764376457280
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