Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21] 9,688 sequences; 362,063,720 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq10 585 3e-162 seq8 585 3e-162 seq7 585 3e-162 seq3 98.7 1e-15 >seq10 Length=17164355 Score = 585 bits (648), Expect = 3e-162 Identities = 702/951 (74%), Gaps = 12/951 (1%) Strand=Plus/Minus Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAG 67417 |||||| ||||| ||||||||||||||||| ||||| |||||||| |||||||| ||||| Sbjct 15961352 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 15961293 Query 67418 TCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAAC 67474 || | ||| | ||| || ||||||||| ||| || | |||| | ||||| Sbjct 15961292 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACG---CGACCTTGGCTATCAAC 15961236 Query 67475 GACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGC 67534 || ||||||||||| ||||| ||||| || ||||| |||||||| | ||| | || Sbjct 15961235 TACAGATTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGC 15961176 Query 67535 AGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTT 67594 ||||||||| || | || ||||| | ||||| | ||||||||| | | | ||||| Sbjct 15961175 AGTGAACCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTT 15961116 Query 67595 GTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTT 67654 ||| ||| ||||| |||||||| || || || || || |||||||| || ||||| || Sbjct 15961115 GTTAAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATT 15961056 Query 67655 GTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGT 67714 ||||||||||| ||||| || || ||||||| | || || || | ||||| || Sbjct 15961055 ATAAGTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGT 15960996 Query 67715 TTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACC 67774 ||| ||||| | | ||| || || | ||||| ||||||||||| || || ||||| || Sbjct 15960995 TTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCC 15960936 Query 67775 GAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTG 67834 ||||||||| ||||| || | ||| || ||||| |||||||||||||| |||||||| || Sbjct 15960935 GAATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTG 15960876 Query 67835 GAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGA 67894 ||| || | ||| |||| ||||||||||| || || | |||||| | ||||||||| Sbjct 15960875 GAATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACT 15960816 Query 67895 ACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTA 67954 |||||||| | ||| || | |||||| |||||| || || | || ||||| || || Sbjct 15960815 TCCTTGACCAATAGGGTAAATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATA 15960756 Query 67955 TGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACC--- 68011 ||| ||| ||||||||||||||||| |||||| || |||||||||| |||||| Sbjct 15960755 TGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCAT 15960696 Query 68012 ACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATT 68071 | | | ||| | || | | |||||| | || | || | |||| || ||||| Sbjct 15960695 ATAACAAGCT---ACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATT 15960639 Query 68072 ATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGC 68131 || ||||||||||| | || ||| |||||||| || || || ||||| | ||||| || Sbjct 15960638 GTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGC 15960579 Query 68132 GTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGC 68191 ||| |||||| || |||||||| || || ||||| ||||| | | ||||| | Sbjct 15960578 CGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGA 15960519 Query 68192 AACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAA 68251 |||||| || | |||||||| ||||| |||||||| || || ||||| || || || || Sbjct 15960518 AACAGGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAA 15960459 Query 68252 GCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACC 68302 || | ||| | | ||| ||| |||||||| ||||||||||| || Sbjct 15960458 TACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCC 15960408 >seq8 Length=23026653 Score = 585 bits (648), Expect = 3e-162 Identities = 702/951 (74%), Gaps = 12/951 (1%) Strand=Plus/Minus Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAG 67417 |||||| ||||| ||||||||||||||||| ||||| |||||||| |||||||| ||||| Sbjct 17291442 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 17291383 Query 67418 TCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAAC 67474 || | ||| | ||| || ||||||||| ||| || | |||| | ||||| Sbjct 17291382 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACG---CGACCTTGGCTATCAAC 17291326 Query 67475 GACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGC 67534 || ||||||||||| ||||| ||||| || ||||| |||||||| | ||| | || Sbjct 17291325 TACAGATTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGC 17291266 Query 67535 AGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTT 67594 ||||||||| || | || ||||| | ||||| | ||||||||| | | | ||||| Sbjct 17291265 AGTGAACCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTT 17291206 Query 67595 GTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTT 67654 ||| ||| ||||| |||||||| || || || || || |||||||| || ||||| || Sbjct 17291205 GTTAAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATT 17291146 Query 67655 GTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGT 67714 ||||||||||| ||||| || || ||||||| | || || || | ||||| || Sbjct 17291145 ATAAGTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGT 17291086 Query 67715 TTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACC 67774 ||| ||||| | | ||| || || | ||||| ||||||||||| || || ||||| || Sbjct 17291085 TTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCC 17291026 Query 67775 GAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTG 67834 ||||||||| ||||| || | ||| || ||||| |||||||||||||| |||||||| || Sbjct 17291025 GAATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTG 17290966 Query 67835 GAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGA 67894 ||| || | ||| |||| ||||||||||| || || | |||||| | ||||||||| Sbjct 17290965 GAATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACT 17290906 Query 67895 ACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTA 67954 |||||||| | ||| || | |||||| |||||| || || | || ||||| || || Sbjct 17290905 TCCTTGACCAATAGGGTAAATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATA 17290846 Query 67955 TGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACC--- 68011 ||| ||| ||||||||||||||||| |||||| || |||||||||| |||||| Sbjct 17290845 TGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCAT 17290786 Query 68012 ACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATT 68071 | | | ||| | || | | |||||| | || | || | |||| || ||||| Sbjct 17290785 ATAACAAGCT---ACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATT 17290729 Query 68072 ATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGC 68131 || ||||||||||| | || ||| |||||||| || || || ||||| | ||||| || Sbjct 17290728 GTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGC 17290669 Query 68132 GTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGC 68191 ||| |||||| || |||||||| || || ||||| ||||| | | ||||| | Sbjct 17290668 CGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGA 17290609 Query 68192 AACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAA 68251 |||||| || | |||||||| ||||| |||||||| || || ||||| || || || || Sbjct 17290608 AACAGGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAA 17290549 Query 68252 GCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACC 68302 || | ||| | | ||| ||| |||||||| ||||||||||| || Sbjct 17290548 TACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCC 17290498 Score = 104 bits (114), Expect = 3e-17 Identities = 135/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 67537 TGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTTGT 67596 ||||||| || | || ||| | | ||||| | ||| ||||| | | | ||||||| Sbjct 13113649 TGAACCAAATCCCTACTACATGCCAAGCAGCCAAGAAAAAGTGTAAAGAACGAGAGTTGT 13113590 Query 67597 TGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTTGT 67656 | ||| ||||| |||||||| || || || || || |||||||| || | ||| || | Sbjct 13113589 TAAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCATAATATTAT 13113530 Query 67657 AAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGTTT 67716 |||||||||| ||||| || || |||||||| | || || || | ||||| |||| Sbjct 13113529 AAGTCTCTTCCTCTTGACCAAATTTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTT 13113470 Query 67717 CTCTGAT 67723 | ||||| Sbjct 13113469 CCCTGAT 13113463 >seq7 Length=26479886 Score = 585 bits (648), Expect = 3e-162 Identities = 702/951 (74%), Gaps = 12/951 (1%) Strand=Plus/Minus Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAG 67417 |||||| ||||| ||||||||||||||||| ||||| |||||||| |||||||| ||||| Sbjct 22563171 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 22563112 Query 67418 TCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAAC 67474 || | ||| | ||| || ||||||||| ||| || | |||| | ||||| Sbjct 22563111 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACG---CGACCTTGGCTATCAAC 22563055 Query 67475 GACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGC 67534 || ||||||||||| ||||| ||||| || ||||| |||||||| | ||| | || Sbjct 22563054 TACAGATTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGC 22562995 Query 67535 AGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTT 67594 ||||||||| || | || ||||| | ||||| | ||||||||| | | | ||||| Sbjct 22562994 AGTGAACCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTT 22562935 Query 67595 GTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTT 67654 ||| ||| ||||| |||||||| || || || || || |||||||| || ||||| || Sbjct 22562934 GTTAAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATT 22562875 Query 67655 GTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGT 67714 ||||||||||| ||||| || || ||||||| | || || || | ||||| || Sbjct 22562874 ATAAGTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGT 22562815 Query 67715 TTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACC 67774 ||| ||||| | | ||| || || | ||||| ||||||||||| || || ||||| || Sbjct 22562814 TTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCC 22562755 Query 67775 GAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTG 67834 ||||||||| ||||| || | ||| || ||||| |||||||||||||| |||||||| || Sbjct 22562754 GAATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTG 22562695 Query 67835 GAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGA 67894 ||| || | ||| |||| ||||||||||| || || | |||||| | ||||||||| Sbjct 22562694 GAATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACT 22562635 Query 67895 ACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTA 67954 |||||||| | ||| || | |||||| |||||| || || | || ||||| || || Sbjct 22562634 TCCTTGACCAATAGGGTAAATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATA 22562575 Query 67955 TGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACC--- 68011 ||| ||| ||||||||||||||||| |||||| || |||||||||| |||||| Sbjct 22562574 TGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCAT 22562515 Query 68012 ACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATT 68071 | | | ||| | || | | |||||| | || | || | |||| || ||||| Sbjct 22562514 ATAACAAGCT---ACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATT 22562458 Query 68072 ATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGC 68131 || ||||||||||| | || ||| |||||||| || || || ||||| | ||||| || Sbjct 22562457 GTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGC 22562398 Query 68132 GTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGC 68191 ||| |||||| || |||||||| || || ||||| ||||| | | ||||| | Sbjct 22562397 CGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGA 22562338 Query 68192 AACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAA 68251 |||||| || | |||||||| ||||| |||||||| || || ||||| || || || || Sbjct 22562337 AACAGGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAA 22562278 Query 68252 GCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACC 68302 || | ||| | | ||| ||| |||||||| ||||||||||| || Sbjct 22562277 TACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCC 22562227 Score = 134 bits (148), Expect = 2e-26 Identities = 176/244 (72%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 68059 AAGGTCCACCATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGT 68118 |||| || ||||| || ||||||||||| | || ||| |||||||| || || || |||| Sbjct 22562146 AAGGACCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGT 22562087 Query 68119 GAAGACCGATTGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACA 68178 | ||||| || ||| |||||| || |||||||| || || ||||| ||||| | Sbjct 22562086 TCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCGTAAA 22562027 Query 68179 TGAGCGAACCTGCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGA 68238 | ||||| | |||| | | | ||| |||| ||||| |||||||| || || |||| Sbjct 22562026 GTAAAGAACCAGAAACATGCCCACGAATATCATCAATATCTACTGGAGGGGCAGCGATGA 22561967 Query 68239 ATGCAATGATGAAGCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACC 68298 | || || || || || | ||| | | ||| ||| |||||||| |||||||||| Sbjct 22561966 AGGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACC 22561907 Query 68299 AACC 68302 | || Sbjct 22561906 ATCC 22561903 >seq3 Length=46202548 Score = 98.7 bits (108), Expect = 1e-15 Identities = 126/171 (74%), Gaps = 7/171 (4%) Strand=Plus/Plus Query 67379 GTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAGTCCTGCTCTGTTAAGGATGTC 67438 || |||||| ||||| |||||||| |||||||| |||| ||| | ||| | ||| || Sbjct 10578632 GTGGTGAGCATTACGTTCGTGCATTACTTCCATAGCAAGATTTGCACGGTTGATGATATC 10578691 Query 67439 TGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAACGACGGATTGGTTGAAGTTGAA 67495 ||||||||| ||| || | |||| | ||||| || ||| ||||||| ||||| Sbjct 10578692 AGCCCAAGTATAAATAACG---CGACCTTGGCTATCAACTACAGAT-GGTTGAAATTGAA 10578747 Query 67496 ACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGCAGTGAACCAGAT 67546 ||||| || ||||| |||||||| | ||| | ||||||||||| || Sbjct 10578748 TCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGTGAACCAAAT 10578798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566878542694080