Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21]
9,688 sequences; 362,063,720 total letters
Query= NC_021071.1
Length=177211
Score E
Sequences producing significant alignments: (Bits) Value
seq10 585 3e-162
seq8 585 3e-162
seq7 585 3e-162
seq3 98.7 1e-15
>seq10
Length=17164355
Score = 585 bits (648), Expect = 3e-162
Identities = 702/951 (74%), Gaps = 12/951 (1%)
Strand=Plus/Minus
Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAG 67417
|||||| ||||| ||||||||||||||||| ||||| |||||||| |||||||| |||||
Sbjct 15961352 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 15961293
Query 67418 TCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAAC 67474
|| | ||| | ||| || ||||||||| ||| || | |||| | |||||
Sbjct 15961292 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACG---CGACCTTGGCTATCAAC 15961236
Query 67475 GACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGC 67534
|| ||||||||||| ||||| ||||| || ||||| |||||||| | ||| | ||
Sbjct 15961235 TACAGATTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGC 15961176
Query 67535 AGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTT 67594
||||||||| || | || ||||| | ||||| | ||||||||| | | | |||||
Sbjct 15961175 AGTGAACCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTT 15961116
Query 67595 GTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTT 67654
||| ||| ||||| |||||||| || || || || || |||||||| || ||||| ||
Sbjct 15961115 GTTAAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATT 15961056
Query 67655 GTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGT 67714
||||||||||| ||||| || || ||||||| | || || || | ||||| ||
Sbjct 15961055 ATAAGTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGT 15960996
Query 67715 TTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACC 67774
||| ||||| | | ||| || || | ||||| ||||||||||| || || ||||| ||
Sbjct 15960995 TTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCC 15960936
Query 67775 GAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTG 67834
||||||||| ||||| || | ||| || ||||| |||||||||||||| |||||||| ||
Sbjct 15960935 GAATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTG 15960876
Query 67835 GAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGA 67894
||| || | ||| |||| ||||||||||| || || | |||||| | |||||||||
Sbjct 15960875 GAATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACT 15960816
Query 67895 ACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTA 67954
|||||||| | ||| || | |||||| |||||| || || | || ||||| || ||
Sbjct 15960815 TCCTTGACCAATAGGGTAAATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATA 15960756
Query 67955 TGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACC--- 68011
||| ||| ||||||||||||||||| |||||| || |||||||||| ||||||
Sbjct 15960755 TGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCAT 15960696
Query 68012 ACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATT 68071
| | | ||| | || | | |||||| | || | || | |||| || |||||
Sbjct 15960695 ATAACAAGCT---ACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATT 15960639
Query 68072 ATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGC 68131
|| ||||||||||| | || ||| |||||||| || || || ||||| | ||||| ||
Sbjct 15960638 GTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGC 15960579
Query 68132 GTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGC 68191
||| |||||| || |||||||| || || ||||| ||||| | | ||||| |
Sbjct 15960578 CGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGA 15960519
Query 68192 AACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAA 68251
|||||| || | |||||||| ||||| |||||||| || || ||||| || || || ||
Sbjct 15960518 AACAGGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAA 15960459
Query 68252 GCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACC 68302
|| | ||| | | ||| ||| |||||||| ||||||||||| ||
Sbjct 15960458 TACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCC 15960408
>seq8
Length=23026653
Score = 585 bits (648), Expect = 3e-162
Identities = 702/951 (74%), Gaps = 12/951 (1%)
Strand=Plus/Minus
Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAG 67417
|||||| ||||| ||||||||||||||||| ||||| |||||||| |||||||| |||||
Sbjct 17291442 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 17291383
Query 67418 TCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAAC 67474
|| | ||| | ||| || ||||||||| ||| || | |||| | |||||
Sbjct 17291382 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACG---CGACCTTGGCTATCAAC 17291326
Query 67475 GACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGC 67534
|| ||||||||||| ||||| ||||| || ||||| |||||||| | ||| | ||
Sbjct 17291325 TACAGATTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGC 17291266
Query 67535 AGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTT 67594
||||||||| || | || ||||| | ||||| | ||||||||| | | | |||||
Sbjct 17291265 AGTGAACCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTT 17291206
Query 67595 GTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTT 67654
||| ||| ||||| |||||||| || || || || || |||||||| || ||||| ||
Sbjct 17291205 GTTAAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATT 17291146
Query 67655 GTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGT 67714
||||||||||| ||||| || || ||||||| | || || || | ||||| ||
Sbjct 17291145 ATAAGTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGT 17291086
Query 67715 TTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACC 67774
||| ||||| | | ||| || || | ||||| ||||||||||| || || ||||| ||
Sbjct 17291085 TTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCC 17291026
Query 67775 GAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTG 67834
||||||||| ||||| || | ||| || ||||| |||||||||||||| |||||||| ||
Sbjct 17291025 GAATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTG 17290966
Query 67835 GAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGA 67894
||| || | ||| |||| ||||||||||| || || | |||||| | |||||||||
Sbjct 17290965 GAATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACT 17290906
Query 67895 ACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTA 67954
|||||||| | ||| || | |||||| |||||| || || | || ||||| || ||
Sbjct 17290905 TCCTTGACCAATAGGGTAAATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATA 17290846
Query 67955 TGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACC--- 68011
||| ||| ||||||||||||||||| |||||| || |||||||||| ||||||
Sbjct 17290845 TGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCAT 17290786
Query 68012 ACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATT 68071
| | | ||| | || | | |||||| | || | || | |||| || |||||
Sbjct 17290785 ATAACAAGCT---ACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATT 17290729
Query 68072 ATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGC 68131
|| ||||||||||| | || ||| |||||||| || || || ||||| | ||||| ||
Sbjct 17290728 GTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGC 17290669
Query 68132 GTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGC 68191
||| |||||| || |||||||| || || ||||| ||||| | | ||||| |
Sbjct 17290668 CGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGA 17290609
Query 68192 AACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAA 68251
|||||| || | |||||||| ||||| |||||||| || || ||||| || || || ||
Sbjct 17290608 AACAGGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAA 17290549
Query 68252 GCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACC 68302
|| | ||| | | ||| ||| |||||||| ||||||||||| ||
Sbjct 17290548 TACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCC 17290498
Score = 104 bits (114), Expect = 3e-17
Identities = 135/187 (72%), Gaps = 0/187 (0%)
Strand=Plus/Minus
Query 67537 TGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTTGT 67596
||||||| || | || ||| | | ||||| | ||| ||||| | | | |||||||
Sbjct 13113649 TGAACCAAATCCCTACTACATGCCAAGCAGCCAAGAAAAAGTGTAAAGAACGAGAGTTGT 13113590
Query 67597 TGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTTGT 67656
| ||| ||||| |||||||| || || || || || |||||||| || | ||| || |
Sbjct 13113589 TAAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCATAATATTAT 13113530
Query 67657 AAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGTTT 67716
|||||||||| ||||| || || |||||||| | || || || | ||||| ||||
Sbjct 13113529 AAGTCTCTTCCTCTTGACCAAATTTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTT 13113470
Query 67717 CTCTGAT 67723
| |||||
Sbjct 13113469 CCCTGAT 13113463
>seq7
Length=26479886
Score = 585 bits (648), Expect = 3e-162
Identities = 702/951 (74%), Gaps = 12/951 (1%)
Strand=Plus/Minus
Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAG 67417
|||||| ||||| ||||||||||||||||| ||||| |||||||| |||||||| |||||
Sbjct 22563171 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 22563112
Query 67418 TCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAAC 67474
|| | ||| | ||| || ||||||||| ||| || | |||| | |||||
Sbjct 22563111 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACG---CGACCTTGGCTATCAAC 22563055
Query 67475 GACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGC 67534
|| ||||||||||| ||||| ||||| || ||||| |||||||| | ||| | ||
Sbjct 22563054 TACAGATTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGC 22562995
Query 67535 AGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTT 67594
||||||||| || | || ||||| | ||||| | ||||||||| | | | |||||
Sbjct 22562994 AGTGAACCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTT 22562935
Query 67595 GTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTT 67654
||| ||| ||||| |||||||| || || || || || |||||||| || ||||| ||
Sbjct 22562934 GTTAAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATT 22562875
Query 67655 GTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGT 67714
||||||||||| ||||| || || ||||||| | || || || | ||||| ||
Sbjct 22562874 ATAAGTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGT 22562815
Query 67715 TTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACC 67774
||| ||||| | | ||| || || | ||||| ||||||||||| || || ||||| ||
Sbjct 22562814 TTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCC 22562755
Query 67775 GAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTG 67834
||||||||| ||||| || | ||| || ||||| |||||||||||||| |||||||| ||
Sbjct 22562754 GAATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTG 22562695
Query 67835 GAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGA 67894
||| || | ||| |||| ||||||||||| || || | |||||| | |||||||||
Sbjct 22562694 GAATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACT 22562635
Query 67895 ACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTA 67954
|||||||| | ||| || | |||||| |||||| || || | || ||||| || ||
Sbjct 22562634 TCCTTGACCAATAGGGTAAATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATA 22562575
Query 67955 TGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACC--- 68011
||| ||| ||||||||||||||||| |||||| || |||||||||| ||||||
Sbjct 22562574 TGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCAT 22562515
Query 68012 ACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATT 68071
| | | ||| | || | | |||||| | || | || | |||| || |||||
Sbjct 22562514 ATAACAAGCT---ACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATT 22562458
Query 68072 ATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGC 68131
|| ||||||||||| | || ||| |||||||| || || || ||||| | ||||| ||
Sbjct 22562457 GTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGC 22562398
Query 68132 GTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGC 68191
||| |||||| || |||||||| || || ||||| ||||| | | ||||| |
Sbjct 22562397 CGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGA 22562338
Query 68192 AACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAA 68251
|||||| || | |||||||| ||||| |||||||| || || ||||| || || || ||
Sbjct 22562337 AACAGGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAA 22562278
Query 68252 GCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACC 68302
|| | ||| | | ||| ||| |||||||| ||||||||||| ||
Sbjct 22562277 TACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCC 22562227
Score = 134 bits (148), Expect = 2e-26
Identities = 176/244 (72%), Gaps = 0/244 (0%)
Strand=Plus/Minus
Query 68059 AAGGTCCACCATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGT 68118
|||| || ||||| || ||||||||||| | || ||| |||||||| || || || ||||
Sbjct 22562146 AAGGACCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGT 22562087
Query 68119 GAAGACCGATTGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACA 68178
| ||||| || ||| |||||| || |||||||| || || ||||| ||||| |
Sbjct 22562086 TCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCGTAAA 22562027
Query 68179 TGAGCGAACCTGCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGA 68238
| ||||| | |||| | | | ||| |||| ||||| |||||||| || || ||||
Sbjct 22562026 GTAAAGAACCAGAAACATGCCCACGAATATCATCAATATCTACTGGAGGGGCAGCGATGA 22561967
Query 68239 ATGCAATGATGAAGCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACC 68298
| || || || || || | ||| | | ||| ||| |||||||| ||||||||||
Sbjct 22561966 AGGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACC 22561907
Query 68299 AACC 68302
| ||
Sbjct 22561906 ATCC 22561903
>seq3
Length=46202548
Score = 98.7 bits (108), Expect = 1e-15
Identities = 126/171 (74%), Gaps = 7/171 (4%)
Strand=Plus/Plus
Query 67379 GTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAGTCCTGCTCTGTTAAGGATGTC 67438
|| |||||| ||||| |||||||| |||||||| |||| ||| | ||| | ||| ||
Sbjct 10578632 GTGGTGAGCATTACGTTCGTGCATTACTTCCATAGCAAGATTTGCACGGTTGATGATATC 10578691
Query 67439 TGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAACGACGGATTGGTTGAAGTTGAA 67495
||||||||| ||| || | |||| | ||||| || ||| ||||||| |||||
Sbjct 10578692 AGCCCAAGTATAAATAACG---CGACCTTGGCTATCAACTACAGAT-GGTTGAAATTGAA 10578747
Query 67496 ACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGCAGTGAACCAGAT 67546
||||| || ||||| |||||||| | ||| | ||||||||||| ||
Sbjct 10578748 TCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGTGAACCAAAT 10578798
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 566878542694080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |