Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21] 9,688 sequences; 362,063,720 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq5 84.2 4e-11 >seq5 Length=25164199 Score = 84.2 bits (92), Expect = 4e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| || || || | || || |||| |||| ||| || || || || ||| Sbjct 21087678 ATACCACCCCTGAGGCGGAGCACCAAGTGTAGGGTAGACTCCTTCTGAATGTTGTAGTCA 21087737 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || |||| |||| || || ||||||||||| | |||||| || || || Sbjct 21087738 GCAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGTCTCTGCTGGTCTGGG 21087797 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || ||||| || || || || || ||| || | || || || Sbjct 21087798 GGGATGCCCTCCTTATCCTGGATCTTCGCCTTCACGTTATCAATGGTGTCCGAGCTCTCA 21087857 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || || ||||| || || ||||| | ||| || | ||| ||||||||| Sbjct 21087858 ACCTCAAGGGTAATAGTCTTGCCAGTGAGTGTCTTGACAAAAATCTGCATT 21087908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984357798958800