Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21]
9,688 sequences; 362,063,720 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq8 138 3e-27
seq3 132 1e-25
seq5 111 5e-19
seq6 95.1 4e-14
seq1 91.5 4e-13
seq12 84.2 6e-11
>seq8
Length=23026653
Score = 138 bits (152), Expect = 3e-27
Identities = 238/342 (70%), Gaps = 4/342 (1%)
Strand=Plus/Minus
Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597
||||||||| || |||||| | ||| || ||||||||| ||| | | || ||
Sbjct 2070789 ATTTCTTACCGTACCATCATATTTCACCATGATATCTTCCATAGCCTTCACAAGTCGTCG 2070730
Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657
||| ||||| ||||| ||| || || ||||| |||||||| ||||| | | ||||||
Sbjct 2070729 CTGGATATATCCAGTCTCAGAGGTCTTCACAGCAGTATCAATCAGACCTTCTCTACCACC 2070670
Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717
||||||||| ||||| | |||| ||| || || | || | ||| |||| || ||
Sbjct 2070669 CATAGCATGAAAGAAAAATTCTTGTGGTGTCAGACCTCTAAGGTAAGAGTTCTCCACAAA 2070610
Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTC--TCA 302775
||||| || || || || || || ||||| |||| || | | || | |
Sbjct 2070609 CCCACGACTTTCAGGACCATAATCATCTTTTGTGAAGTGGGGCAACGTTC-GATCGATGA 2070551
Query 302776 TAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGC 302835
|||| ||||||| ||||| || ||||| ||||||||||| | || | | |||| ||
Sbjct 2070550 -AGCCAAATGGGATCCGCTTGCCCTCAACATTCTGCTGTCCGACACAAGCAGTCATTTGA 2070492
Query 302836 GAAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCATA 302877
|||||||| | ||| || || ||||| ||| | ||||||
Sbjct 2070491 GAAATATTGATGAAACTTCCTTTTGAGCCTGCAGTAACCATA 2070450
Score = 136 bits (150), Expect = 1e-26
Identities = 240/345 (70%), Gaps = 10/345 (3%)
Strand=Plus/Minus
Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597
||||||||| || |||||| | ||| || ||||||||| ||| | | || ||
Sbjct 2048646 ATTTCTTACCGTACCATCATATTTCACCATGATATCTTCCATAGCCTTCACAAGTCGTCG 2048587
Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657
||| ||||| ||||| ||| || || ||||| |||||||| ||||| | | ||||||
Sbjct 2048586 CTGGATATATCCAGTCTCAGAGGTCTTCACAGCAGTATCAATCAGACCTTCTCTACCACC 2048527
Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717
||||||||| ||||| | |||| ||| || || | || | ||| |||| || ||
Sbjct 2048526 CATAGCATGAAAGAAAAATTCTTGTGGTGTCAGACCTCTAAGGTAAGAGTTCTCCACAAA 2048467
Query 302718 ACCACGCGCCTCGGG---CGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTC-- 302772
||||| || || |||| || || || ||||| |||| || | | ||
Sbjct 2048466 CCCACGACTTTCAGGACCTAAATCATC---TTTTGTGAAGTGAGGCAACGTTC-GATCGA 2048411
Query 302773 TCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATC 302832
| | |||| ||||||| ||||| || ||||| ||||||||||| | || | | ||||
Sbjct 2048410 TGA-AGCCAAATGGGATCCGCTTGCCCTCAACATTCTGCTGTCCGACACAAGCAGTCATT 2048352
Query 302833 TGCGAAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCATA 302877
|| |||||||| | ||| || || ||||| ||| | ||||||
Sbjct 2048351 TGAGAAATATTGATGAAACTTCCTTTTGAGCCTGCAGTAACCATA 2048307
>seq3
Length=46202548
Score = 132 bits (146), Expect = 1e-25
Identities = 213/306 (70%), Gaps = 0/306 (0%)
Strand=Plus/Plus
Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597
|||||| || || |||||| | ||| || ||||||||| ||| | | || ||
Sbjct 42913750 ATTTCTAACAGTACCATCATACTTCACCATGATATCTTCCATAGCCTTCACAAGTCGTCG 42913809
Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657
||| ||||| |||||| || || || ||||| |||||||| ||||| | | ||||||
Sbjct 42913810 CTGGATATATCCAGTTTCCGAGGTCTTCACAGCAGTATCAATCAGACCTTCTCTACCACC 42913869
Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717
||||||||| ||||| | |||| ||| || || | || | ||| |||| || ||
Sbjct 42913870 CATAGCATGAAAGAAAAATTCTTGTGGTGTCAGGCCTCGAAGGTAAGAGTTCTCCACAAA 42913929
Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATA 302777
||||| || || |||||| || || ||||| || | || | || |
Sbjct 42913930 CCCACGACTTTCAGGACCATCGTCATTTTTCGTGAAGTGGGGTAATGTTCGATTGGTGAA 42913989
Query 302778 GCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGA 302837
||| ||||||| ||||| || ||||| ||||||||||| | || | | ||||||| ||
Sbjct 42913990 GCCAAATGGGATCCGCTTGCCCTCAACATTCTGCTGTCCGACACAAGCAGTCATCTGTGA 42914049
Query 302838 AATATT 302843
||||||
Sbjct 42914050 AATATT 42914055
Score = 98.7 bits (108), Expect = 3e-15
Identities = 166/235 (71%), Gaps = 8/235 (3%)
Strand=Plus/Minus
Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGC--AATT 289086
||| |||||||||| ||| ||||||||||| | | | || ||| || | | || ||
Sbjct 9190767 ACCCACAGCATCAAGTTCATCAATGAAAATTATAGATGGGGAAGCTTCTTTGGCCTCCTT 9190708
Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146
| ||||| || |||||||||| |||||| ||||| | | ||| ||||||||| |
Sbjct 9190707 G--AATAAATCCCTTACACGGGCTGCTCCTCTTCCAACGAAAACTTCAACAAATTCACTA 9190650
Query 289147 GCGGATACTTGAATGAATGTTACATT--TGCTTCGCCTGCTACTGCCCTCGCCAGAAGTG 289204
|| || || || || | | ||| || || ||||| |||||||| |||||||| |
Sbjct 9190649 GCAGAAAC-AGAGAAAAAGGGA-ATTCCAGCCTCTCCTGCAACTGCCCTTGCCAGAAGAG 9190592
Query 289205 TCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCC 289259
| || || ||||| || || || | | ||||| ||| | |||| ||| || ||
Sbjct 9190591 TTTTCCCAGTTCCTGGAGGCCCAACAAGCAGAACACCCCTGGGTAATTTAGCTCC 9190537
>seq5
Length=25164199
Score = 111 bits (122), Expect = 5e-19
Identities = 164/231 (71%), Gaps = 5/231 (2%)
Strand=Plus/Plus
Query 156038 CATAGCAAAACTACCATTCCTCTTGCC---ACCCTGATCTACATACCGAGCAGTCTTATT 156094
||||| || ||||| || |||||||| ||| ||||| ||||| || ||||| | |||
Sbjct 3366099 CATAG--AACCTACCCTTTCTCTTGCCTCCACCTTGATCAACATAACGGGCAGTATCATT 3366156
Query 156095 GAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGA 156154
||| |||| ||||||||||| ||| |||||||| || ||||| ||||| || ||||
Sbjct 3366157 GAAAACACGTAGCATAGGAACAATCCCATTGGAGGTTCCATTTGTTCCACGGATATAGCT 3366216
Query 156155 ACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTG 156214
|||| | |||| ||| |||| || ||||| || || | |||| ||
Sbjct 3366217 CCCAGTAGCTCGAATATTGTGAACTGATACACCAATTCCTCCAGCAGATTTGCTTATGAC 3366276
Query 156215 AGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265
||| |||||||| | ||||| | || || ||||| ||||||| |||
Sbjct 3366277 AGCACATTCCTTCAAAGTATCATAGATTCCCTCAATGCTGTCATCTTTCAT 3366327
>seq6
Length=30401905
Score = 95.1 bits (104), Expect = 4e-14
Identities = 205/301 (68%), Gaps = 8/301 (3%)
Strand=Plus/Plus
Query 251404 GCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGC 251463
|| ||||| |||||||| | || |||||||| ||||| ||||| |||| ||| |
Sbjct 7710787 GCAATAAGCCCACACTTCTCGCATACATGGACTCTGTACACATCACTCTGGTCAAATAAC 7710846
Query 251464 CGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCG 251523
| ||||| ||| | ||| || || | ||||||||| || | |||||| || ||
Sbjct 7710847 CTTTCCTTGAGGAAAAATGCTGCGCCATGAGCAATCATACAGTCCCTCTCCATCTCTCCA 7710906
Query 251524 AAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATA 251583
|| || ||||||||||| || | | ||||| ||||| || | || || | || |
Sbjct 7710907 AACCGGAGACCACCATCACGTGAGCGCCCCTCTGCAGGTTGTCTGGTAAGTATCTGCACA 7710966
Query 251584 GGACCGATGGAGCGGCTA---TGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAG 251640
||||| | | || ||| || ||| |||| ||||| ||||| || | ||||||
Sbjct 7710967 GGACC-ACG--GCCTCTAGAGTGAATCTTGTCATCCACCATGTGCTTAAGTCTCTGGTAA 7711023
Query 251641 AATGCGGGACCGATGAAGATGCTCGAAG-GCATTTGCTCTCCAGTTAGAGCGTTATACAT 251699
| | ||||| | ||| || | | || |||| || |||||| || |||| |||||
Sbjct 7711024 TAAGTAGGACCAAGGAAAATCATGGCAGTTAATTTTCT-TCCAGTGTGACCGTTGTACAT 7711082
Query 251700 A 251700
|
Sbjct 7711083 A 7711083
Score = 95.1 bits (104), Expect = 4e-14
Identities = 319/475 (67%), Gaps = 24/475 (5%)
Strand=Plus/Minus
Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCG---GTTTGCTT-AAATCC 288944
||||| || ||||| || || || |||| ||||| ||||| ||| | | ||| ||
Sbjct 26807375 ATATCAGCCCTGTTGGTGGCAGC-AATA--ACAAT-GATTCCAGTGTTCCCCTCAAAACC 26807320
Query 288945 ATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGA 289004
|||||| || | | ||||| | || || ||||||||||||||| ||| | |
Sbjct 26807319 ATCCATCTCAGTCAGCAACTGATTCAAAGTCTGCTCCCTTTCATCATTTCCACCACC--A 26807262
Query 289005 ATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACA 289064
|| ||| | || ||| || || ||||||||||||||||| |||| || | | ||
Sbjct 26807261 AT-ACCTGT-TC-CTCTTTGCCTT-CCAACAGCATCAATTTCATCAACAAATACTATGCA 26807206
Query 289065 CGGAGAATTTTGTCTCGC--AATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCA 289122
|||| ||| | | || ||| ||| | || | || ||||| || |||| ||
Sbjct 26807205 AGGAGCATTCTCCTTTGCCTTCTTGAAAAGA--TCACGAACCCGGGAGGCACCAACTCCC 26807148
Query 289123 ACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCC 289181
||| |||| || ||||| || || | |||| | || | |||| ||| ||||| ||
Sbjct 26807147 ACAAACATCTCCACAAACTCGGATCCTGATA-TCGAGAAAAATGGCACACCAGCTTCTCC 26807089
Query 289182 TGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCC 289241
||| | ||| | || || | |||||||| |||||||| || || | | ||||| ||
Sbjct 26807088 TGCAATAGCCTTGGCAAGCAAAGTCTTACCAGTTCCAGGAGGACCAACAAGCAGAACACC 26807029
Query 289242 CTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAAT 289301
||| || | || ||| ||| | | | || || |||| || || || || |
Sbjct 26807028 CTTAGGGATGCGAGCACCAACAGCAGTGAACCTTTCTGGTTTCTTCAAGAACTCAACCAC 26806969
Query 289302 TTCC-TCAAGTTCATATTTTGCCTCATC-ACATCCTGCTACATCAGCAAAAGTAA 289354
|||| | ||| || | ||||| ||||| ||| || || |||||| |||| ||||
Sbjct 26806968 TTCCATGAAG-TCTTGCTTTGCTTCATCGACA-CCAGCAACATCATCAAATGTAA 26806916
>seq1
Length=43445878
Score = 91.5 bits (100), Expect = 4e-13
Identities = 214/317 (68%), Gaps = 6/317 (2%)
Strand=Plus/Minus
Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089
|||| ||||||||||| |||||||| | | || || ||| || | || | |
Sbjct 33910461 CCAATTGCATCAATTTCATCAATGAATACAATACTAGGTGAACACTGCCGAGCTTCTTGA 33910402
Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149
||||| | | || | ||||| |||| ||||||| ||||||| | || || ||| |
Sbjct 33910401 AATAAGTTCCGCACCCTGGATGGCCCAACACCAACAAACATTTCCATGAAGTCTGAACCA 33910342
Query 289150 GATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208
|| | | || | ||| | ||| | || ||||| || | || || || |||||
Sbjct 33910341 GA-AATAGACAAGAAGGGCACACCAGACTCTCCTGCAGTAGCTTTAGCAAGGAGAGTCTT 33910283
Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGACT 289267
||||| || || || || | | ||| | |||||||||| |||||| ||||| ||
Sbjct 33910282 TCCTGTGCCTGGGGGACCAACAAGAAGAGCACCCTTTGGTATTTTTGCTCCCAG--TTCT 33910225
Query 289268 T-ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCA 289326
| |||||||| || | || | || | |||| |||| || ||| | ||| || |||
Sbjct 33910224 TCATATTTCTTGGGATTTTTCAGGAAATGAACAAATTCCATAATTTCTTGTTTGGCTTCA 33910165
Query 289327 TCACATCCTGCTACATC 289343
||||| || ||||||||
Sbjct 33910164 TCACAGCCAGCTACATC 33910148
>seq12
Length=18681871
Score = 84.2 bits (92), Expect = 6e-11
Identities = 63/74 (85%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 408951 TAACTCAGTTGGTTAGAGTGTCGGTCTTATGAGCCGAAAGTCGTGGGTTCGAGTCCCACA 409010
|| ||||||||||||||| || |||||||||||||||| |||| ||||||||| ||| |
Sbjct 7471782 TAGCTCAGTTGGTTAGAGCGTTGGTCTTATGAGCCGAAGGTCGCGGGTTCGAGCCCCGCC 7471841
Query 409011 TAGAACAttttttt 409024
|| |||||||||
Sbjct 7471842 GGGACCATTTTTTT 7471855
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471634906960856
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |