Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21] 9,688 sequences; 362,063,720 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq8 138 3e-27 seq3 132 1e-25 seq5 111 5e-19 seq6 95.1 4e-14 seq1 91.5 4e-13 seq12 84.2 6e-11 >seq8 Length=23026653 Score = 138 bits (152), Expect = 3e-27 Identities = 238/342 (70%), Gaps = 4/342 (1%) Strand=Plus/Minus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 ||||||||| || |||||| | ||| || ||||||||| ||| | | || || Sbjct 2070789 ATTTCTTACCGTACCATCATATTTCACCATGATATCTTCCATAGCCTTCACAAGTCGTCG 2070730 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 ||| ||||| ||||| ||| || || ||||| |||||||| ||||| | | |||||| Sbjct 2070729 CTGGATATATCCAGTCTCAGAGGTCTTCACAGCAGTATCAATCAGACCTTCTCTACCACC 2070670 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 ||||||||| ||||| | |||| ||| || || | || | ||| |||| || || Sbjct 2070669 CATAGCATGAAAGAAAAATTCTTGTGGTGTCAGACCTCTAAGGTAAGAGTTCTCCACAAA 2070610 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTC--TCA 302775 ||||| || || || || || || ||||| |||| || | | || | | Sbjct 2070609 CCCACGACTTTCAGGACCATAATCATCTTTTGTGAAGTGGGGCAACGTTC-GATCGATGA 2070551 Query 302776 TAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGC 302835 |||| ||||||| ||||| || ||||| ||||||||||| | || | | |||| || Sbjct 2070550 -AGCCAAATGGGATCCGCTTGCCCTCAACATTCTGCTGTCCGACACAAGCAGTCATTTGA 2070492 Query 302836 GAAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCATA 302877 |||||||| | ||| || || ||||| ||| | |||||| Sbjct 2070491 GAAATATTGATGAAACTTCCTTTTGAGCCTGCAGTAACCATA 2070450 Score = 136 bits (150), Expect = 1e-26 Identities = 240/345 (70%), Gaps = 10/345 (3%) Strand=Plus/Minus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 ||||||||| || |||||| | ||| || ||||||||| ||| | | || || Sbjct 2048646 ATTTCTTACCGTACCATCATATTTCACCATGATATCTTCCATAGCCTTCACAAGTCGTCG 2048587 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 ||| ||||| ||||| ||| || || ||||| |||||||| ||||| | | |||||| Sbjct 2048586 CTGGATATATCCAGTCTCAGAGGTCTTCACAGCAGTATCAATCAGACCTTCTCTACCACC 2048527 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 ||||||||| ||||| | |||| ||| || || | || | ||| |||| || || Sbjct 2048526 CATAGCATGAAAGAAAAATTCTTGTGGTGTCAGACCTCTAAGGTAAGAGTTCTCCACAAA 2048467 Query 302718 ACCACGCGCCTCGGG---CGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTC-- 302772 ||||| || || |||| || || || ||||| |||| || | | || Sbjct 2048466 CCCACGACTTTCAGGACCTAAATCATC---TTTTGTGAAGTGAGGCAACGTTC-GATCGA 2048411 Query 302773 TCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATC 302832 | | |||| ||||||| ||||| || ||||| ||||||||||| | || | | |||| Sbjct 2048410 TGA-AGCCAAATGGGATCCGCTTGCCCTCAACATTCTGCTGTCCGACACAAGCAGTCATT 2048352 Query 302833 TGCGAAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCATA 302877 || |||||||| | ||| || || ||||| ||| | |||||| Sbjct 2048351 TGAGAAATATTGATGAAACTTCCTTTTGAGCCTGCAGTAACCATA 2048307 >seq3 Length=46202548 Score = 132 bits (146), Expect = 1e-25 Identities = 213/306 (70%), Gaps = 0/306 (0%) Strand=Plus/Plus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 |||||| || || |||||| | ||| || ||||||||| ||| | | || || Sbjct 42913750 ATTTCTAACAGTACCATCATACTTCACCATGATATCTTCCATAGCCTTCACAAGTCGTCG 42913809 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 ||| ||||| |||||| || || || ||||| |||||||| ||||| | | |||||| Sbjct 42913810 CTGGATATATCCAGTTTCCGAGGTCTTCACAGCAGTATCAATCAGACCTTCTCTACCACC 42913869 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 ||||||||| ||||| | |||| ||| || || | || | ||| |||| || || Sbjct 42913870 CATAGCATGAAAGAAAAATTCTTGTGGTGTCAGGCCTCGAAGGTAAGAGTTCTCCACAAA 42913929 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATA 302777 ||||| || || |||||| || || ||||| || | || | || | Sbjct 42913930 CCCACGACTTTCAGGACCATCGTCATTTTTCGTGAAGTGGGGTAATGTTCGATTGGTGAA 42913989 Query 302778 GCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGA 302837 ||| ||||||| ||||| || ||||| ||||||||||| | || | | ||||||| || Sbjct 42913990 GCCAAATGGGATCCGCTTGCCCTCAACATTCTGCTGTCCGACACAAGCAGTCATCTGTGA 42914049 Query 302838 AATATT 302843 |||||| Sbjct 42914050 AATATT 42914055 Score = 98.7 bits (108), Expect = 3e-15 Identities = 166/235 (71%), Gaps = 8/235 (3%) Strand=Plus/Minus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGC--AATT 289086 ||| |||||||||| ||| ||||||||||| | | | || ||| || | | || || Sbjct 9190767 ACCCACAGCATCAAGTTCATCAATGAAAATTATAGATGGGGAAGCTTCTTTGGCCTCCTT 9190708 Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 | ||||| || |||||||||| |||||| ||||| | | ||| ||||||||| | Sbjct 9190707 G--AATAAATCCCTTACACGGGCTGCTCCTCTTCCAACGAAAACTTCAACAAATTCACTA 9190650 Query 289147 GCGGATACTTGAATGAATGTTACATT--TGCTTCGCCTGCTACTGCCCTCGCCAGAAGTG 289204 || || || || || | | ||| || || ||||| |||||||| |||||||| | Sbjct 9190649 GCAGAAAC-AGAGAAAAAGGGA-ATTCCAGCCTCTCCTGCAACTGCCCTTGCCAGAAGAG 9190592 Query 289205 TCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCC 289259 | || || ||||| || || || | | ||||| ||| | |||| ||| || || Sbjct 9190591 TTTTCCCAGTTCCTGGAGGCCCAACAAGCAGAACACCCCTGGGTAATTTAGCTCC 9190537 >seq5 Length=25164199 Score = 111 bits (122), Expect = 5e-19 Identities = 164/231 (71%), Gaps = 5/231 (2%) Strand=Plus/Plus Query 156038 CATAGCAAAACTACCATTCCTCTTGCC---ACCCTGATCTACATACCGAGCAGTCTTATT 156094 ||||| || ||||| || |||||||| ||| ||||| ||||| || ||||| | ||| Sbjct 3366099 CATAG--AACCTACCCTTTCTCTTGCCTCCACCTTGATCAACATAACGGGCAGTATCATT 3366156 Query 156095 GAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGA 156154 ||| |||| ||||||||||| ||| |||||||| || ||||| ||||| || |||| Sbjct 3366157 GAAAACACGTAGCATAGGAACAATCCCATTGGAGGTTCCATTTGTTCCACGGATATAGCT 3366216 Query 156155 ACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTG 156214 |||| | |||| ||| |||| || ||||| || || | |||| || Sbjct 3366217 CCCAGTAGCTCGAATATTGTGAACTGATACACCAATTCCTCCAGCAGATTTGCTTATGAC 3366276 Query 156215 AGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 ||| |||||||| | ||||| | || || ||||| ||||||| ||| Sbjct 3366277 AGCACATTCCTTCAAAGTATCATAGATTCCCTCAATGCTGTCATCTTTCAT 3366327 >seq6 Length=30401905 Score = 95.1 bits (104), Expect = 4e-14 Identities = 205/301 (68%), Gaps = 8/301 (3%) Strand=Plus/Plus Query 251404 GCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGC 251463 || ||||| |||||||| | || |||||||| ||||| ||||| |||| ||| | Sbjct 7710787 GCAATAAGCCCACACTTCTCGCATACATGGACTCTGTACACATCACTCTGGTCAAATAAC 7710846 Query 251464 CGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCG 251523 | ||||| ||| | ||| || || | ||||||||| || | |||||| || || Sbjct 7710847 CTTTCCTTGAGGAAAAATGCTGCGCCATGAGCAATCATACAGTCCCTCTCCATCTCTCCA 7710906 Query 251524 AAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATA 251583 || || ||||||||||| || | | ||||| ||||| || | || || | || | Sbjct 7710907 AACCGGAGACCACCATCACGTGAGCGCCCCTCTGCAGGTTGTCTGGTAAGTATCTGCACA 7710966 Query 251584 GGACCGATGGAGCGGCTA---TGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAG 251640 ||||| | | || ||| || ||| |||| ||||| ||||| || | |||||| Sbjct 7710967 GGACC-ACG--GCCTCTAGAGTGAATCTTGTCATCCACCATGTGCTTAAGTCTCTGGTAA 7711023 Query 251641 AATGCGGGACCGATGAAGATGCTCGAAG-GCATTTGCTCTCCAGTTAGAGCGTTATACAT 251699 | | ||||| | ||| || | | || |||| || |||||| || |||| ||||| Sbjct 7711024 TAAGTAGGACCAAGGAAAATCATGGCAGTTAATTTTCT-TCCAGTGTGACCGTTGTACAT 7711082 Query 251700 A 251700 | Sbjct 7711083 A 7711083 Score = 95.1 bits (104), Expect = 4e-14 Identities = 319/475 (67%), Gaps = 24/475 (5%) Strand=Plus/Minus Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCG---GTTTGCTT-AAATCC 288944 ||||| || ||||| || || || |||| ||||| ||||| ||| | | ||| || Sbjct 26807375 ATATCAGCCCTGTTGGTGGCAGC-AATA--ACAAT-GATTCCAGTGTTCCCCTCAAAACC 26807320 Query 288945 ATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGA 289004 |||||| || | | ||||| | || || ||||||||||||||| ||| | | Sbjct 26807319 ATCCATCTCAGTCAGCAACTGATTCAAAGTCTGCTCCCTTTCATCATTTCCACCACC--A 26807262 Query 289005 ATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACA 289064 || ||| | || ||| || || ||||||||||||||||| |||| || | | || Sbjct 26807261 AT-ACCTGT-TC-CTCTTTGCCTT-CCAACAGCATCAATTTCATCAACAAATACTATGCA 26807206 Query 289065 CGGAGAATTTTGTCTCGC--AATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCA 289122 |||| ||| | | || ||| ||| | || | || ||||| || |||| || Sbjct 26807205 AGGAGCATTCTCCTTTGCCTTCTTGAAAAGA--TCACGAACCCGGGAGGCACCAACTCCC 26807148 Query 289123 ACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCC 289181 ||| |||| || ||||| || || | |||| | || | |||| ||| ||||| || Sbjct 26807147 ACAAACATCTCCACAAACTCGGATCCTGATA-TCGAGAAAAATGGCACACCAGCTTCTCC 26807089 Query 289182 TGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCC 289241 ||| | ||| | || || | |||||||| |||||||| || || | | ||||| || Sbjct 26807088 TGCAATAGCCTTGGCAAGCAAAGTCTTACCAGTTCCAGGAGGACCAACAAGCAGAACACC 26807029 Query 289242 CTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAAT 289301 ||| || | || ||| ||| | | | || || |||| || || || || | Sbjct 26807028 CTTAGGGATGCGAGCACCAACAGCAGTGAACCTTTCTGGTTTCTTCAAGAACTCAACCAC 26806969 Query 289302 TTCC-TCAAGTTCATATTTTGCCTCATC-ACATCCTGCTACATCAGCAAAAGTAA 289354 |||| | ||| || | ||||| ||||| ||| || || |||||| |||| |||| Sbjct 26806968 TTCCATGAAG-TCTTGCTTTGCTTCATCGACA-CCAGCAACATCATCAAATGTAA 26806916 >seq1 Length=43445878 Score = 91.5 bits (100), Expect = 4e-13 Identities = 214/317 (68%), Gaps = 6/317 (2%) Strand=Plus/Minus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 |||| ||||||||||| |||||||| | | || || ||| || | || | | Sbjct 33910461 CCAATTGCATCAATTTCATCAATGAATACAATACTAGGTGAACACTGCCGAGCTTCTTGA 33910402 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 ||||| | | || | ||||| |||| ||||||| ||||||| | || || ||| | Sbjct 33910401 AATAAGTTCCGCACCCTGGATGGCCCAACACCAACAAACATTTCCATGAAGTCTGAACCA 33910342 Query 289150 GATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 || | | || | ||| | ||| | || ||||| || | || || || ||||| Sbjct 33910341 GA-AATAGACAAGAAGGGCACACCAGACTCTCCTGCAGTAGCTTTAGCAAGGAGAGTCTT 33910283 Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGACT 289267 ||||| || || || || | | ||| | |||||||||| |||||| ||||| || Sbjct 33910282 TCCTGTGCCTGGGGGACCAACAAGAAGAGCACCCTTTGGTATTTTTGCTCCCAG--TTCT 33910225 Query 289268 T-ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCA 289326 | |||||||| || | || | || | |||| |||| || ||| | ||| || ||| Sbjct 33910224 TCATATTTCTTGGGATTTTTCAGGAAATGAACAAATTCCATAATTTCTTGTTTGGCTTCA 33910165 Query 289327 TCACATCCTGCTACATC 289343 ||||| || |||||||| Sbjct 33910164 TCACAGCCAGCTACATC 33910148 >seq12 Length=18681871 Score = 84.2 bits (92), Expect = 6e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 408951 TAACTCAGTTGGTTAGAGTGTCGGTCTTATGAGCCGAAAGTCGTGGGTTCGAGTCCCACA 409010 || ||||||||||||||| || |||||||||||||||| |||| ||||||||| ||| | Sbjct 7471782 TAGCTCAGTTGGTTAGAGCGTTGGTCTTATGAGCCGAAGGTCGCGGGTTCGAGCCCCGCC 7471841 Query 409011 TAGAACAttttttt 409024 || ||||||||| Sbjct 7471842 GGGACCATTTTTTT 7471855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471634906960856