Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21] 9,688 sequences; 362,063,720 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq6 107 2e-18 >seq6 Length=30401905 Score = 107 bits (118), Expect = 2e-18 Identities = 163/227 (72%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 194197 GATGGTTGTAGAATAGTTAAAGTTGTTATTGG-TCAGTTACGTATACCTGAAATAGGGGA 194255 ||||||| ||| | ||||| ||| || | |||||| |||||||| | || ||||| Sbjct 7711604 GATGGTTTAAGATTTGTTAAGGTTAGAATGCGATCAGTT-CGTATACCACAGATTGGGGA 7711546 Query 194256 TAAATTTTGTTCG-GGAATGGCTCAAAAAGGAACTTGTGGTATGATTTATTCACAAGAAG 194314 ||| ||| || || |||| ||| ||||||||| || |||| |||| ||||||| | Sbjct 7711545 TAAGTTTAGTAGTAGGCATGG-TCAGAAAGGAACTGTGGGAATGACTTATACACAAGAGG 7711487 Query 194315 ATATGCCATTTACAACTTCAGGTATGGTACCAGATATTATTATCAATCCAAATTGTATTC 194374 | ||||| | || | | ||| || ||| ||||||||| | |||||| || ||||| Sbjct 7711486 ACATGCCGTGGACTATTGAAGGCATCACACCTGATATTATTGTGAATCCACATGCTATTC 7711427 Query 194375 CGTCCAGAATGACCATTAATCAAATTATTGCTACTGTTATGGGTAAA 194421 | ||| | ||||| ||| ||| | |||| | ||||||||||| Sbjct 7711426 CATCCCGTATGACTATTGGTCAGCTGATTGAGTGTATTATGGGTAAA 7711380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632413005509440