Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21] 9,688 sequences; 362,063,720 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq5 96.9 3e-15 seq6 91.5 1e-13 seq2 86.0 5e-12 >seq5 Length=25164199 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 |||||| ||||||||||| || | || ||||| || |||||| | || ||| ||| Sbjct 21087908 AATGCAGATTTTTGTCAAGACACTCACTGGCAAGACTATTACCCTTGAGGTTGAGAGCTC 21087849 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 | || || | | | || || ||||| ||||| || ||| | ||| || | Sbjct 21087848 G-GACACCATTGATAACGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCCCCAGACC 21087790 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 |||||||||| || | ||| || || ||||||||||| | | || | || ||||||| Sbjct 21087789 AGCAGAGACTCATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTTGCTGACTACA 21087730 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||||| ||||||||||| | ||| ||||| Sbjct 21087729 ACATTCAGAAGGAGTCTACCCTACACTTGGTG 21087698 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| || || || || || | || ||||| |||||||| | || ||| | Sbjct 21088136 AATGCAGATCTTCGTGAAGACCCTTACTGGCAAGACCATTACGCTTGAGGTCGAGTCATC 21088077 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | | || || ||||| || || || ||| | ||| || || Sbjct 21088076 AGACACGATCGACAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCA 21088017 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | ||||||| ||| || || ||||||||||||| || ||| | || |||||||| Sbjct 21088016 GCAGCGTCTTATTTTTGCTGGCAAGCAGCTGGAGGACGGCAGAACCCTCGCCGACTACAA 21087957 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| || |||||||| || Sbjct 21087956 CATCCAGAAGGAGTCCAC 21087939 >seq6 Length=30401905 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||||||||| || | || ||||| |||||||| | || ||| || Sbjct 26902857 ATGCAGATTTTTGTCAAGACCCTGACCGGCAAGACCATTACGCTTGAGGTTGAGTCTTCT 26902916 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | | || || ||||| || || || || | ||| ||| ||| Sbjct 26902917 GATACGATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGGATTCCCCCGGACCAG 26902976 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| || || ||||| ||||| | || |||| || |||||| Sbjct 26902977 CAGCGCCTCATCTTTGCAGGCAAGCAGCTCGAGGATGGACGCACCCTGGCTGATTACAAC 26903036 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||| |||||||| || |||||| ||||| Sbjct 26903037 ATTCAGAAGGAGTCCACCTTGCACCTGGTG 26903066 >seq2 Length=36083738 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || |||||||| || | |||||||| ||||| ||| | || ||| ||| | Sbjct 2262656 ATGCAGATCTTTGTCAAGACCCTCACAGGCAAGACCATCACCCTGGAGGTTGAGAGCTCG 2262597 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | | || || ||||| || || || ||| | ||| ||| || Sbjct 2262596 -GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCA 2262538 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | ||| || || ||||||||||| | || || | || |||||||| Sbjct 2262537 GCAGCGCCTCATCTTTGCTGGCAAGCAGCTGGAGGATGGCAGGACCCTTGCTGACTACAA 2262478 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||| || |||||||| || | ||| | ||| Sbjct 2262477 CATCCAGAAGGAGTCCACCCTCCACCTTGTG 2262447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398829703619032