Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21]
9,688 sequences; 362,063,720 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq6 100 2e-16
seq4 84.2 2e-11
>seq6
Length=30401905
Score = 100 bits (110), Expect = 2e-16
Identities = 105/138 (76%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618
||| ||||| | | ||| |||||||| ||||| || ||||| |||||||| ||||| ||
Sbjct 25234386 TCCACCCCTGAGCCTCAGGACCAAATGGAGCGTTGACTCTTTCTGAATGTTGTAATCAGC 25234327
Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678
| || || ||| || ||||| || || || | |||| |||||||| || || ||
Sbjct 25234326 TAATGTACGTCCATCTTCCAGTTGCTTCCCTGCGAAAATCAGCCTTTGCTGGTCTGGGGG 25234267
Query 29679 AATACCCTCTTTGTCTTG 29696
||||||||||||||| ||
Sbjct 25234266 AATACCCTCTTTGTCCTG 25234249
>seq4
Length=32292456
Score = 84.2 bits (92), Expect = 2e-11
Identities = 139/198 (70%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 29590 GTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCA 29649
||||| || || || |||||||||||||| | || || ||| || || || ||||||
Sbjct 28749501 GTGGACTCCTTCTGGATGTTATAATCCGCGAGAGTACGCCCATCCTCAAGCTGCTTGCCA 28749442
Query 29650 GCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TT 29708
|| | || | | ||||| ||||| || || ||||| || || || ||| || | ||
Sbjct 28749441 GCGAAGATAAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTATCCTG-AATCTTAGCCTT 28749383
Query 29709 GACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGT 29768
||| | || | || || || || || || | || || || |||||||| | |||
Sbjct 28749382 CACATTGTCAATCGTATCGGAGGACTCAACCTCCAAGGTGATGGTCTTGCCAGTGAGGGT 28749323
Query 29769 TTTAACAAATATCTGCAT 29786
||||| |||||||||||
Sbjct 28749322 CTTAACGAATATCTGCAT 28749305
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385173716206008
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |