Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21] 9,688 sequences; 362,063,720 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq6 102 1e-16 >seq6 Length=30401905 Score = 102 bits (112), Expect = 1e-16 Identities = 162/227 (71%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 192954 GATGGTTGTAGAATAGTTAAAGTTGTTATTGG-TCAGTTACGTATACCTGAAATAGGGGA 193012 ||||||| ||| | ||||| ||| || | |||||| |||||||| | || ||||| Sbjct 7711604 GATGGTTTAAGATTTGTTAAGGTTAGAATGCGATCAGTT-CGTATACCACAGATTGGGGA 7711546 Query 193013 TAAATTTTGTTCG-GGAATGGCCCAAAAAGGAACTTGTGGTATGATTTATTCACAAGAAG 193071 ||| ||| || || |||| | | ||||||||| || |||| |||| ||||||| | Sbjct 7711545 TAAGTTTAGTAGTAGGCATGGTC-AGAAAGGAACTGTGGGAATGACTTATACACAAGAGG 7711487 Query 193072 ATATGCCATTTACAACTTCAGGTATGGTACCAGATATTATTATTAATCCAAATTGTATTC 193131 | ||||| | || | | ||| || ||| ||||||||| | |||||| || ||||| Sbjct 7711486 ACATGCCGTGGACTATTGAAGGCATCACACCTGATATTATTGTGAATCCACATGCTATTC 7711427 Query 193132 CGTCCAGAATGACCATTAATCAAATTATTGCTACTGTTATGGGTAAA 193178 | ||| | ||||| ||| ||| | |||| | ||||||||||| Sbjct 7711426 CATCCCGTATGACTATTGGTCAGCTGATTGAGTGTATTATGGGTAAA 7711380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628455084871680