Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21]
9,688 sequences; 362,063,720 total letters
Query= NC_023615.1
Length=196456
Score E
Sequences producing significant alignments: (Bits) Value
seq6 102 1e-16
>seq6
Length=30401905
Score = 102 bits (112), Expect = 1e-16
Identities = 162/227 (71%), Gaps = 4/227 (2%)
Strand=Plus/Minus
Query 192954 GATGGTTGTAGAATAGTTAAAGTTGTTATTGG-TCAGTTACGTATACCTGAAATAGGGGA 193012
||||||| ||| | ||||| ||| || | |||||| |||||||| | || |||||
Sbjct 7711604 GATGGTTTAAGATTTGTTAAGGTTAGAATGCGATCAGTT-CGTATACCACAGATTGGGGA 7711546
Query 193013 TAAATTTTGTTCG-GGAATGGCCCAAAAAGGAACTTGTGGTATGATTTATTCACAAGAAG 193071
||| ||| || || |||| | | ||||||||| || |||| |||| ||||||| |
Sbjct 7711545 TAAGTTTAGTAGTAGGCATGGTC-AGAAAGGAACTGTGGGAATGACTTATACACAAGAGG 7711487
Query 193072 ATATGCCATTTACAACTTCAGGTATGGTACCAGATATTATTATTAATCCAAATTGTATTC 193131
| ||||| | || | | ||| || ||| ||||||||| | |||||| || |||||
Sbjct 7711486 ACATGCCGTGGACTATTGAAGGCATCACACCTGATATTATTGTGAATCCACATGCTATTC 7711427
Query 193132 CGTCCAGAATGACCATTAATCAAATTATTGCTACTGTTATGGGTAAA 193178
| ||| | ||||| ||| ||| | |||| | |||||||||||
Sbjct 7711426 CATCCCGTATGACTATTGGTCAGCTGATTGAGTGTATTATGGGTAAA 7711380
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628455084871680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |