Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21] 9,688 sequences; 362,063,720 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq3 223 3e-52 seq12 129 4e-24 seq2 98.7 7e-15 >seq3 Length=46202548 Score = 223 bits (246), Expect = 3e-52 Identities = 746/1151 (65%), Gaps = 20/1151 (2%) Strand=Plus/Minus Query 281424 CGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGA 281483 |||||| |||||| || ||||| ||||| || | ||||| ||| || ||||||| Sbjct 43850399 CGGCAGACACATTCAGGATACCGTTGGCGTCAATGTCAAAGCAGACAGTGATCTGAGGGA 43850340 Query 281484 CCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTT 281543 | || || | ||||| ||||| || || | |||| | || || ||| || || Sbjct 43850339 CTCCCCTAGGGGCAGGAGGGATTCCAGACAGCTCAAATTTGCCAAGGAGATTGTTGTCCC 43850280 Query 281544 TAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAAT 281603 | || | | | |||||||| | | || || || ||| || ||||| || | Sbjct 43850279 TGGTCCGTGTCCTCTCACCCTCATAGACCTGAATCAACACACCAGGCTGGTTATCGGAGT 43850220 Query 281604 AAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTG 281662 | || | || || ||| || || |||||| || ||||| || || | Sbjct 43850219 AGGTGGAGAAGAC-CTGCTCCTTCTTGGTAGGAATGGTGGTGTTCCTTGGGATGAGCACT 43850161 Query 281663 GTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 281722 ||||| | ||| || ||||| || | ||||||||| || ||||| ||||||| || | | Sbjct 43850160 GTCATCACACCTCCCGCTGTCTCGAGACCAAGAGACAGTGGAGTCACATCAAGGAGAAGA 43850101 Query 281723 ATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 281782 | || || | || || | | ||| ||| ||||| || || | |||||||| Sbjct 43850100 AGATCCTGCACCTTCTCGTTCCCCTCTCCACTAAGGATAGCAGCCTGGACGGCAGCACCG 43850041 Query 281783 TATGCAACAGCTTCATCAGGATTAA--CAGTTTCATTTAGTTTTTTACCATTGAAAAAAT 281840 ||||| |||||||||||||| |||| | || || |||| || || ||||| || | Sbjct 43850040 TATGCCACAGCTTCATCAGGGTTAATGCTCTTGCAG--AGTTCCTTCCCGTTGAAGAAGT 43849983 Query 281841 TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCAT 281900 ||||| || ||| | || || | || ||| || ||||| | |||| |||| Sbjct 43849982 CCTGCAGAAGCTGCTGAACCCTGGGGATTCTAGTTGAACCACCAACAAGGACAACATCAT 43849923 Query 281901 GCACCTGTGAT-TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCA 281959 | || ||| | || |||| |||| |||| | || || || || || | || Sbjct 43849922 GGACA-GTGCTCTTGTCCATCTTTGCATCCCTCAGGCACTTCTCCACAGGCTCCATACAT 43849864 Query 281960 GCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAA 282019 || || | ||| ||| || || || | ||||| || | |||| || || Sbjct 43849863 TTCCTGAAGAGGTCCATGTTAAGCTCCTCAAACCTGGCTCTGGTGATAGTGGAATAGAAA 43849804 Query 282020 TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCA 282079 |||| || || || | ||||||| |||||| |||||||| | | || || || | Sbjct 43849803 TCAACACCCTCAAAGAGGGAATCAATTTCAATAGTAGTTTGGGCAGTGGAGGAGAGGGTC 43849744 Query 282080 CGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCA 282137 | || || | |||||||| ||| || || || | || || | | | || | | | Sbjct 43849743 CTCTTTGCCCTTTCACATGATGTTCTGAGCCTCCTCAAAGCCCTGG--GGTTCCCACTGA 43849686 Query 282138 AATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAA 282197 ||| | |||| ||||||||||| |||| ||| | | || || || || |||| Sbjct 43849685 TATCCTTCTTATGCTTTCTCTTGAACTCTTGGACAAAGTGGTTCACCAGGCGGTTGTCAA 43849626 Query 282198 AATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTT 282257 | || || || || | | ||| | || | || ||| | || | |||| || || | Sbjct 43849625 AGTCCTCCCCACCAAGGTGAGTGTCACCAGCTGTTGCTTTCACCTCAAAAATACCCTCCT 43849566 Query 282258 CAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCA 282317 ||| | | || | |||||| || |||||||| | |||||||| || || ||| Sbjct 43849565 CAATTGTAAGGAGGGAGACATCAAAAGTACCACCACCAAGGTCAAAAATGAGCACGTTCT 43849506 Query 282318 TTTCT-------TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGT 282370 | || | ||| || || ||||||||||| |||| |||||||| ||||| Sbjct 43849505 TCTCACCAACACTAGTCGCC-TTCTTGTCAAGACCATAAGCAATTGCAGCAGCTGTTGGC 43849447 Query 282371 TCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGT 282430 ||||| || || | || |||||||||||| ||||| || ||||||||||| || || Sbjct 43849446 TCATTGATGATACGCATAACATTAAGACCCGCAATAACACCGGCATCTTTAGTTGCCTGC 43849387 Query 282431 CTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCA 282490 || || ||||| || || || ||||||||||| | ||| |||| | || | ||| Sbjct 43849386 CTCTGGGAATCATTGAAGTAAGCAGGAACAGTGACAACAGCATTCTTCACAGTTGATCCT 43849327 Query 282491 ATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGA 282550 | ||||| || | | ||| || | | || ||| |||||||||| ||| | | Sbjct 43849326 AGGTAAGCTTCAGCGATCTCACGCATCTTGATAAGAACCATGGATGAAATTTCTTCGGCA 43849267 Query 282551 GAATATTGCTT 282561 || ||||||| Sbjct 43849266 GAGAATTGCTT 43849256 Score = 100 bits (110), Expect = 2e-15 Identities = 137/190 (72%), Gaps = 6/190 (3%) Strand=Plus/Minus Query 282275 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 282334 |||||| ||| || || |||| ||||| | ||| | || |||| |||| || | Sbjct 39971007 ACATCAAAGGTACCGCCTCCCAAGTCAAACACAAGAA---TCGTTTCATTGTTTT---TC 39970954 Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 || |||| |||||| |||| | |||||||| || ||||| ||||| | | ||| | Sbjct 39970953 TTCTCAAAACCATAAGCAAGGGATGCAGCAGTCGGCTCATTTATAATGCGGAGAACTTCC 39970894 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454 | || ||||| | ||| |||||||| || ||| || ||||| || || || |||||| Sbjct 39970893 AATCCTGCAATACGTCCAGCATCTTTTGTTGCTGTCCTCTGTGAGTCATTGAAGTATGCA 39970834 Query 282455 GGAACAGTAA 282464 |||||||||| Sbjct 39970833 GGAACAGTAA 39970824 >seq12 Length=18681871 Score = 129 bits (142), Expect = 4e-24 Identities = 226/328 (69%), Gaps = 6/328 (2%) Strand=Plus/Plus Query 282152 TTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCC 282211 || |||||||| |||| ||| | | || | |||||| |||||||||||||| || Sbjct 2060667 TTCCTCTTGAATTCTTGCACAAAGTGGTTGACCATACGATTGTCAAAATCTTCACCACCA 2060726 Query 282212 AATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGA 282271 | | || | || | || || | || | || | || || |||| | | || Sbjct 2060727 AGATGGGTGTCACCAGCTGTGGCCTTGACCTCAAAGATACCCTCCTCAATGGTAAGGAGG 2060786 Query 282272 GTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCT--- 282328 | |||||| ||| ||||| || | ||||| || || |||||| | || | Sbjct 2060787 GAGACATCAAAGGTACCACCTCCAAGGTCAAAGATGAGGACATTCTTCTCACCAACGCTG 2060846 Query 282329 -TGG--TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTC 282385 ||| || |||||||||||||| |||| ||| |||||||| || || || || || | | Sbjct 2060847 GTGGCCTTCTTATCAAGACCATAGGCAATAGCTGCAGCAGTCGGCTCGTTGATGATACGC 2060906 Query 282386 AAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTA 282445 | ||||| ||||||||||| ||| ||||| || ||||| || || || || || || Sbjct 2060907 ATGACATTGAGACCAGCAATCACTCCAGCATCCTTGGTGGCCTGCCTCTGGGAGTCATTG 2060966 Query 282446 AAATATGCAGGAACAGTAATAACGGCAT 282473 || || ||||||||||| | |||||||| Sbjct 2060967 AAGTAGGCAGGAACAGTGACAACGGCAT 2060994 Score = 86.0 bits (94), Expect = 5e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 || ||||||||||| |||| ||||||||||| || ||||| || || | || |||| Sbjct 15772615 TTGTCAAGACCATAGGCAATGGCAGCAGCAGTAGGCTCATTGATGATACGCATGACATCG 15772556 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454 || |||||||| || ||||| || || || || || ||||| ||||| || || ||| Sbjct 15772555 AGGCCAGCAATGACCCCAGCATCCTTGGTAGCCTGCCTCTGTGAGTCGTTGAAGTAAGCA 15772496 Query 282455 GGAAC 282459 | ||| Sbjct 15772495 GTAAC 15772491 >seq2 Length=36083738 Score = 98.7 bits (108), Expect = 7e-15 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 ||||| | | ||||||||||||||||||||| || || ||| |||| ||| |||||| Sbjct 32683477 CCATAAGACAGAGCAGCAGCAGTTGGTTCATTGATGATCCTCTGGACATCAAGTCCAGCA 32683536 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 || | || ||||| || || || || | || | ||| |||||||| || ||||| ||| Sbjct 32683537 ATGCGACCAGCATCCTTGGTTGCCTGACGCTGAGCATCATTAAAATAAGCTGGAACTGTA 32683596 Query 282464 ATAACGGCATCTGTTACTTCTTTTCCAATATAAG 282497 || ||||| | || || ||| |||| |||| Sbjct 32683597 ATCACGGCCTTTGAAACAGTTTTACCAAGGTAAG 32683630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740154760141488