Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21] 9,688 sequences; 362,063,720 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq4 134 3e-26 seq6 125 1e-23 seq5 125 1e-23 seq2 109 1e-18 >seq4 Length=32292456 Score = 134 bits (148), Expect = 3e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | | || || || | ||||| || || || ||||| || ||||| |||| Sbjct 28749989 TACCTCCACGAAGGCGGAGGACCAGGTGCAAGGTGGACTCCTTCTGGATGTTATAGTCAG 28749930 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | ||||| || || || || ||||| ||||| || | || || ||||||| Sbjct 28749929 CAAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATGAGCCGCTGCTGGTCTGGAG 28749870 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || |||||||| || ||||| || || ||||| || ||||| ||| | || | Sbjct 28749869 GGATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTGTCGATCGTGTCAGAGGACTCAA 28749810 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | ||||| || ||||||||||| || | ||||| ||||| |||||||| Sbjct 28749809 CCTCCAAGGTGATCGTCTTGCCAGTAAGGGTCTTCACAAAGATCTGCAT 28749761 Score = 131 bits (144), Expect = 3e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||||| || || || ||||| || |||||||| | ||| | | || Sbjct 28749519 CGGAGGACAAGGTGCAAGGTGGACTCCTTCTGGATGTTATAATCCGCGAGAGTACGCCCA 28749460 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||| ||||| || | || || || ||||| || || |||||| Sbjct 28749459 TCCTCAAGCTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTA 28749400 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || |||||||| || || ||||| ||||||||||| | || || ||||| || || Sbjct 28749399 TCCTGAATCTTAGCCTTCACATTGTCAATCGTATCGGAGGACTCAACCTCCAAGGTGATG 28749340 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || | ||||| || ||||||||||| Sbjct 28749339 GTCTTGCCAGTGAGGGTCTTAACGAATATCTGCAT 28749305 Score = 113 bits (124), Expect = 9e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || | |||||| || ||||| || || || || || || | || | | || Sbjct 28749747 CGCAGGACAAGGTGCAGGGTGGATTCCTTTTGGATGTTGTAGTCTGCAAGGGTGCGGCCA 28749688 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||||||||| || | || || ||||| || ||||| ||||| Sbjct 28749687 TCCTCGAGCTGCTTCCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGGATTCCCTCCTTG 28749628 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| || || ||||| || ||||| ||| | || || |||| || || Sbjct 28749627 TCCTGGATCTTGGCCTTCACATTATCGATCGTGTCAGACGACTCGACCTCCAGGGTAATG 28749568 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || | ||||| || ||||| ||||| Sbjct 28749567 GTCTTGCCGGTGAGGGTCTTCACGAATATTTGCAT 28749533 >seq6 Length=30401905 Score = 125 bits (138), Expect = 1e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| || | || || || | ||| || || || || ||||| || || ||||| | Sbjct 26902627 CCTCCCCTGAGGCGTAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGCG 26902568 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || || |||||||| || ||||||||||| || | ||| || || || || Sbjct 26902567 AGGGTGCGGCCATCCTCTAGTTGCTTGCCAGCAAAGATGAGACGTTGCTGGTCAGGTGGA 26902508 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| ||||||||||| || || |||| ||||| |||||| | || || Sbjct 26902507 ATGCCCTCCTTGTCTTGAATCTTGGCCTTCACATCGTCAATTGTATCAGAGGACTCAACC 26902448 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || |||||||| || | ||||| ||||| |||||||| Sbjct 26902447 TCGAGGGTGATGGTCTTGCCAGTGAGTGTCTTCACAAAGATCTGCAT 26902401 >seq5 Length=25164199 Score = 125 bits (138), Expect = 1e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| || | || || || | ||| || || || || ||||| || || || |||| Sbjct 21088137 CCTCCCCTGAGGCGGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCA 21088196 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | ||||| || || || || || ||||||||||| || | || || || || || Sbjct 21088197 AGGGTCCTACCATCCTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGA 21088256 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| || || |||||||| || || || ||||| |||||| || || || Sbjct 21088257 ATCCCCTCCTTGTCCTGGATCTTTGCCTTAACGTTGTCAATGGTATCAGAAGACTCAACC 21088316 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || |||||||| ||||| ||||| ||||| || ||||| Sbjct 21088317 TCAAGGGTGATAGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 21088363 Score = 122 bits (134), Expect = 2e-22 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || || | || || || ||||| || ||||| || ||||| || || || |||| Sbjct 21087679 TACCACCCCTGAGGCGGAGCACCAAGTGTAGGGTAGACTCCTTCTGAATGTTGTAGTCAG 21087738 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | || || || || || || ||||||||||| ||||| || || ||||| | Sbjct 21087739 CAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGTCTCTGCTGGTCTGGGG 21087798 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCT 82760 | || || |||||||| || ||||| || || || || ||||| || || || | || Sbjct 21087799 GGATGCCCTCCTTATCCTGGATCTTCGCCTTCACGTTATCAATGGTGTC-CGAGCTCTCA 21087857 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || || | || || |||||||| || | ||||| ||||| ||||||||| Sbjct 21087858 ACCTCAAGGGTAATAGTCTTGCCAGTGAGTGTCTTGACAAAAATCTGCATT 21087908 Score = 107 bits (118), Expect = 4e-18 Identities = 170/241 (71%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 82571 CATTTATCACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTAT 82630 || |||| || ||| || || | || || || | ||| || || || || ||||| || Sbjct 21087440 CAATTATTACTGACCACCCCTAAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGAAT 21087499 Query 82631 ATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTG 82690 || || || | || | | || ||||| || || || || || ||||| || | || Sbjct 21087500 GTTGTAGTCGGCGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTG 21087559 Query 82691 TTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATC 82750 || ||||| || || ||||||||||| || ||||| || || ||||| || || || || Sbjct 21087560 CTGGTCTGGGGGAATACCTTCCTTATCCTGGATCTTAGCCTTCACATTGTCGATGGTGTC 21087619 Query 82751 ATTAGGT-TCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCA 82809 || | || || |||| ||| || |||||||| || | ||||| ||||| ||||||| Sbjct 21087620 -GGAGCTCTCAACCTCCAGAGTAATGGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCA 21087678 Query 82810 T 82810 | Sbjct 21087679 T 21087679 >seq2 Length=36083738 Score = 109 bits (120), Expect = 1e-18 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||| || || || || ||||| || || || |||| || | || || Sbjct 2262987 CGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCA 2263046 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||||||||| || | || || || || || || || ||||| Sbjct 2263047 TCCTCCAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTG 2263106 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| || || ||||| || || || ||| | || || || | || || Sbjct 2263107 TCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCAGAGGACTCCACCTCGAGGGTGATA 2263166 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| ||||| ||||| ||||| |||||||| Sbjct 2263167 GTCTTGCCGGTCAATGTCTTCACAAAGATCTGCAT 2263201 Score = 104 bits (114), Expect = 5e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 |||||||| | || || || || || ||||| || || || || | || | || || Sbjct 2262759 CGCAGAACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTCCTGCCA 2262818 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||||||||| || | || || ||||| || || || ||||| Sbjct 2262819 TCCTCCAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTG 2262878 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| || || || || || || || ||| || || || || | || || Sbjct 2262879 TCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAAGACTCCACCTCAAGGGTGATG 2262938 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| |||| ||||| || || |||||||| Sbjct 2262939 GTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCAT 2262973 Score = 98.7 bits (108), Expect = 2e-15 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||| || || || || ||||| || || || |||| || | || || Sbjct 2262442 CGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCA 2262501 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||||||||| || | || || || || || || || ||||| Sbjct 2262502 TCCTCCAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTG 2262561 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTAT 82774 || || ||||| || || || || || || || || || | || || |||| || || Sbjct 2262562 TCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTC-CGAGCTCTCAACCTCCAGGGTGAT 2262620 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||||||| | ||||| ||||| |||||||| Sbjct 2262621 GGTCTTGCCTGTGAGGGTCTTGACAAAGATCTGCAT 2262656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981705328244232