Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21]
9,688 sequences; 362,063,720 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq4 134 3e-26
seq6 125 1e-23
seq5 125 1e-23
seq2 109 1e-18
>seq4
Length=32292456
Score = 134 bits (148), Expect = 3e-26
Identities = 167/229 (73%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
||||||| | | || || || | ||||| || || || ||||| || ||||| ||||
Sbjct 28749989 TACCTCCACGAAGGCGGAGGACCAGGTGCAAGGTGGACTCCTTCTGGATGTTATAGTCAG 28749930
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
|| | | ||||| || || || || ||||| ||||| || | || || |||||||
Sbjct 28749929 CAAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATGAGCCGCTGCTGGTCTGGAG 28749870
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || || |||||||| || ||||| || || ||||| || ||||| ||| | || |
Sbjct 28749869 GGATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTGTCGATCGTGTCAGAGGACTCAA 28749810
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
| ||||| || ||||||||||| || | ||||| ||||| ||||||||
Sbjct 28749809 CCTCCAAGGTGATCGTCTTGCCAGTAAGGGTCTTCACAAAGATCTGCAT 28749761
Score = 131 bits (144), Expect = 3e-25
Identities = 158/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
|| || || | ||||| || || || ||||| || |||||||| | ||| | | ||
Sbjct 28749519 CGGAGGACAAGGTGCAAGGTGGACTCCTTCTGGATGTTATAATCCGCGAGAGTACGCCCA 28749460
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
|| || || || || ||||| ||||| || | || || || ||||| || || ||||||
Sbjct 28749459 TCCTCAAGCTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTA 28749400
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775
|| |||||||| || || ||||| ||||||||||| | || || ||||| || ||
Sbjct 28749399 TCCTGAATCTTAGCCTTCACATTGTCAATCGTATCGGAGGACTCAACCTCCAAGGTGATG 28749340
Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||||||| || | ||||| || |||||||||||
Sbjct 28749339 GTCTTGCCAGTGAGGGTCTTAACGAATATCTGCAT 28749305
Score = 113 bits (124), Expect = 9e-20
Identities = 154/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
||||| || | |||||| || ||||| || || || || || || | || | | ||
Sbjct 28749747 CGCAGGACAAGGTGCAGGGTGGATTCCTTTTGGATGTTGTAGTCTGCAAGGGTGCGGCCA 28749688
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
|| || || || || ||||||||||| || | || || ||||| || ||||| |||||
Sbjct 28749687 TCCTCGAGCTGCTTCCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGGATTCCCTCCTTG 28749628
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775
|| || ||||| || || ||||| || ||||| ||| | || || |||| || ||
Sbjct 28749627 TCCTGGATCTTGGCCTTCACATTATCGATCGTGTCAGACGACTCGACCTCCAGGGTAATG 28749568
Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||||||| || | ||||| || ||||| |||||
Sbjct 28749567 GTCTTGCCGGTGAGGGTCTTCACGAATATTTGCAT 28749533
>seq6
Length=30401905
Score = 125 bits (138), Expect = 1e-23
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
||||| || | || || || | ||| || || || || ||||| || || ||||| |
Sbjct 26902627 CCTCCCCTGAGGCGTAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGCG 26902568
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
|| | | || || |||||||| || ||||||||||| || | ||| || || || ||
Sbjct 26902567 AGGGTGCGGCCATCCTCTAGTTGCTTGCCAGCAAAGATGAGACGTTGCTGGTCAGGTGGA 26902508
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
|| || ||||| ||||||||||| || || |||| ||||| |||||| | || ||
Sbjct 26902507 ATGCCCTCCTTGTCTTGAATCTTGGCCTTCACATCGTCAATTGTATCAGAGGACTCAACC 26902448
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| | || || |||||||| || | ||||| ||||| ||||||||
Sbjct 26902447 TCGAGGGTGATGGTCTTGCCAGTGAGTGTCTTCACAAAGATCTGCAT 26902401
>seq5
Length=25164199
Score = 125 bits (138), Expect = 1e-23
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
||||| || | || || || | ||| || || || || ||||| || || || ||||
Sbjct 21088137 CCTCCCCTGAGGCGGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCA 21088196
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
|| | ||||| || || || || || ||||||||||| || | || || || || ||
Sbjct 21088197 AGGGTCCTACCATCCTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGA 21088256
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
|| || ||||| || || |||||||| || || || ||||| |||||| || || ||
Sbjct 21088257 ATCCCCTCCTTGTCCTGGATCTTTGCCTTAACGTTGTCAATGGTATCAGAAGACTCAACC 21088316
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| | || || |||||||| ||||| ||||| ||||| || |||||
Sbjct 21088317 TCAAGGGTGATAGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 21088363
Score = 122 bits (134), Expect = 2e-22
Identities = 167/231 (72%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || || | || || || ||||| || ||||| || ||||| || || || ||||
Sbjct 21087679 TACCACCCCTGAGGCGGAGCACCAAGTGTAGGGTAGACTCCTTCTGAATGTTGTAGTCAG 21087738
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
|| | | || || || || || || ||||||||||| ||||| || || ||||| |
Sbjct 21087739 CAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGTCTCTGCTGGTCTGGGG 21087798
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCT 82760
| || || |||||||| || ||||| || || || || ||||| || || || | ||
Sbjct 21087799 GGATGCCCTCCTTATCCTGGATCTTCGCCTTCACGTTATCAATGGTGTC-CGAGCTCTCA 21087857
Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811
|| || | || || |||||||| || | ||||| ||||| |||||||||
Sbjct 21087858 ACCTCAAGGGTAATAGTCTTGCCAGTGAGTGTCTTGACAAAAATCTGCATT 21087908
Score = 107 bits (118), Expect = 4e-18
Identities = 170/241 (71%), Gaps = 2/241 (1%)
Strand=Plus/Plus
Query 82571 CATTTATCACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTAT 82630
|| |||| || ||| || || | || || || | ||| || || || || ||||| ||
Sbjct 21087440 CAATTATTACTGACCACCCCTAAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGAAT 21087499
Query 82631 ATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTG 82690
|| || || | || | | || ||||| || || || || || ||||| || | ||
Sbjct 21087500 GTTGTAGTCGGCGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTG 21087559
Query 82691 TTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATC 82750
|| ||||| || || ||||||||||| || ||||| || || ||||| || || || ||
Sbjct 21087560 CTGGTCTGGGGGAATACCTTCCTTATCCTGGATCTTAGCCTTCACATTGTCGATGGTGTC 21087619
Query 82751 ATTAGGT-TCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCA 82809
|| | || || |||| ||| || |||||||| || | ||||| ||||| |||||||
Sbjct 21087620 -GGAGCTCTCAACCTCCAGAGTAATGGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCA 21087678
Query 82810 T 82810
|
Sbjct 21087679 T 21087679
>seq2
Length=36083738
Score = 109 bits (120), Expect = 1e-18
Identities = 153/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
|| || || | ||| || || || || ||||| || || || |||| || | || ||
Sbjct 2262987 CGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCA 2263046
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
|| || || || || ||||||||||| || | || || || || || || || |||||
Sbjct 2263047 TCCTCCAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTG 2263106
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775
|| || ||||| || || ||||| || || || ||| | || || || | || ||
Sbjct 2263107 TCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCAGAGGACTCCACCTCGAGGGTGATA 2263166
Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||||||| ||||| ||||| ||||| ||||||||
Sbjct 2263167 GTCTTGCCGGTCAATGTCTTCACAAAGATCTGCAT 2263201
Score = 104 bits (114), Expect = 5e-17
Identities = 152/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
|||||||| | || || || || || ||||| || || || || | || | || ||
Sbjct 2262759 CGCAGAACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTCCTGCCA 2262818
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
|| || || || || ||||||||||| || | || || ||||| || || || |||||
Sbjct 2262819 TCCTCCAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTG 2262878
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775
|| || ||||| || || || || || || || ||| || || || || | || ||
Sbjct 2262879 TCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAAGACTCCACCTCAAGGGTGATG 2262938
Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||||||| |||| ||||| || || ||||||||
Sbjct 2262939 GTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCAT 2262973
Score = 98.7 bits (108), Expect = 2e-15
Identities = 153/216 (71%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
|| || || | ||| || || || || ||||| || || || |||| || | || ||
Sbjct 2262442 CGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCA 2262501
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
|| || || || || ||||||||||| || | || || || || || || || |||||
Sbjct 2262502 TCCTCCAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTG 2262561
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTAT 82774
|| || ||||| || || || || || || || || || | || || |||| || ||
Sbjct 2262562 TCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTC-CGAGCTCTCAACCTCCAGGGTGAT 2262620
Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||||||||||| | ||||| ||||| ||||||||
Sbjct 2262621 GGTCTTGCCTGTGAGGGTCTTGACAAAGATCTGCAT 2262656
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981705328244232
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