Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21]
9,688 sequences; 362,063,720 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq6 91.5 1e-13
seq1 89.7 3e-13
seq5 87.8 1e-12
>seq6
Length=30401905
Score = 91.5 bits (100), Expect = 1e-13
Identities = 144/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606
|| |||||| |||||| || ||||||||||| | || || || |||| || | ||
Sbjct 26902831 TGAAGAGTGGACTCTTTCTGAATGTTGTAATCAGCCAGGGTCCGACCGTCCTCAAGCTGC 26902772
Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666
|| |||||||| || | ||||||||| || | || | || || ||||| || |||
Sbjct 26902771 TTGCCGGCAAAGATGAGACGCTGCTGGTCAGGAGGGATCCCCTCCTTGTCCTGGATCTTC 26902712
Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725
||| |||| ||| | ||||| || || || || | ||||| || || |||||
Sbjct 26902711 GCCTTC-ACATTGTCGATCGTGTCCGACGACTCGACCTCGAGAGTGATGGTCTTTCCTGT 26902653
Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749
|| || || ||||||||||||||
Sbjct 26902652 CAAGGTCTTCACAAAGATCTGCAT 26902629
>seq1
Length=43445878
Score = 89.7 bits (98), Expect = 3e-13
Identities = 148/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599
||||| || || || ||| || || |||||||| |||| ||| ||||| |||| ||
Sbjct 9972236 CACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCCGTCCTC 9972177
Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659
|| || || ||||| || || | |||||||| || |||| | || || |||||
Sbjct 9972176 CAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCGGGCGGGATCCCCTCCTTGTCCTG 9972117
Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718
|| ||| |||| | | ||| | |||||| || ||||| || | ||||||||| |
Sbjct 9972116 GATCTTCGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATCGTCT 9972058
Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| || || | || || || |||||||||||
Sbjct 9972057 TCCCCGTCAGGGTCTTCACGAAGATCTGCAT 9972027
Score = 89.7 bits (98), Expect = 3e-13
Identities = 148/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599
||||| || || || ||| || || |||||||| |||| ||| ||||| |||| ||
Sbjct 9981444 CACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCCGTCCTC 9981385
Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659
|| || || ||||| || || | |||||||| || |||| | || || |||||
Sbjct 9981384 CAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCGGGCGGGATCCCCTCCTTGTCCTG 9981325
Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718
|| ||| |||| | | ||| | |||||| || ||||| || | ||||||||| |
Sbjct 9981324 GATCTTCGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATCGTCT 9981266
Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| || || | || || || |||||||||||
Sbjct 9981265 TCCCCGTCAGGGTCTTCACGAAGATCTGCAT 9981235
>seq5
Length=25164199
Score = 87.8 bits (96), Expect = 1e-12
Identities = 159/230 (69%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| || | || | ||||| || || ||| ||| || || |||||||| ||||
Sbjct 21087452 ACCACCCCTAAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGC 21087511
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
||| ||||| | || |||| || || ||||| || |||| |||||||| ||| | ||
Sbjct 21087512 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCTGGGGG 21087571
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| |||||| || || || || |||| ||| ||| | ||||||| || |
Sbjct 21087572 AATACCTTCCTTATCCTGGATCTTAGCCTTCA-CATTGTCGATGGTGTCGGAGCTCTCAA 21087630
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| || | || || || || || || | || || |||||||||||||||
Sbjct 21087631 CCTCCAGAGTAATGGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCATA 21087680
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328665189096960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |