Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21] 9,688 sequences; 362,063,720 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq5 111 4e-19 seq2 100 7e-16 seq6 96.9 8e-15 seq1 89.7 1e-12 seq4 87.8 4e-12 >seq5 Length=25164199 Score = 111 bits (122), Expect = 4e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || ||||| || || || || ||| |||| || || || || ||| Sbjct 21087676 CAGATCTTTGTCAAGACTCTCACTGGCAAGACCATTACTCTGGAGGTTGAGAGCTCCGAC 21087617 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || ||||| ||| || ||| || Sbjct 21087616 ACCATCGACAATGTGAAGGCTAAGATCCAGGATAAGGAAGGTATTCCCCCAGACCAGCAG 21087557 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| |||||||||| | || | ||||| |||||| | Sbjct 21087556 CGCCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCGCCGACTACAACATT 21087497 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || || ||||| || Sbjct 21087496 CAGAAGGAGTCCACCCTCCACCTGGT 21087471 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| ||| || | || || || || ||||| | || || || |||||| Sbjct 21088360 CAAATCTTTGTCAAGACCTTGACTGGCAAGACTATCACCCTTGAGGTTGAGTCTTCTGAT 21088301 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| |||||| || || || || || ||| |||||| || Sbjct 21088300 ACCATTGACAACGTTAAGGCAAAGATCCAGGACAAGGAGGGGATTCCCCCGGACCAGCAG 21088241 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| || || |||||| | || ||||| ||||| | || || |||||| || Sbjct 21088240 CGTCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGTAGGACCCTTGCTGACTACAACATC 21088181 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || ||||||||||| Sbjct 21088180 CAGAAGGAGTCCACCCTTCACCTTGT 21088155 Score = 84.2 bits (92), Expect = 5e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| |||| ||||| || ||||| |||| Sbjct 3097474 AAGACCCTGACGGGGAAGACCATCACGCTGGAGGTGGAGTCCTCGGACACCATCGACAAC 3097415 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||| || |||||| || | || |||||| Sbjct 3097414 GTGAAGGCCAAGATCCAGGACAAGGAAGGGATCCCCCCGGACCAGCAGCGCCTCATCTTC 3097355 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| | || || || | || | ||||| |||||| ||||||| ||||| Sbjct 3097354 GCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCC 3097295 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 3097294 ACCCTCCACCTCGT 3097281 >seq2 Length=36083738 Score = 100 bits (110), Expect = 7e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || ||||||||||| || || || || ||||| | || || ||| Sbjct 2262404 ACTGGGAAGACCATCACTTTGGAGGTTGAGAGCTCCGACACCATTGATAATGTGAAGGCC 2262345 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || || || ||| || ||| || | || |||||||| || ||| Sbjct 2262344 AAGATCCAGGACAAGGAGGGGATTCCCCCAGACCAGCAGCGTCTGATCTTCGCTGGCAAG 2262285 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||| |||||| | || ||||||| |||||| ||||||| ||||| || || ||| Sbjct 2262284 CAGCTGGAGGATGGACGCACCCTGGCCGACTACAACATCCAGAAGGAGTCCACCCTCCAC 2262225 Query 206374 CTTGT 206378 || || Sbjct 2262224 CTGGT 2262220 >seq6 Length=30401905 Score = 96.9 bits (106), Expect = 8e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | |||||||| || |||||| | || || || || ||| Sbjct 26902632 CAGATCTTTGTGAAGACCTTGACAGGAAAGACCATCACTCTCGAGGTCGAGTCGTCGGAC 26902691 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || || || || || ||| || Sbjct 26902692 ACGATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGGATCCCTCCTGACCAGCAG 26902751 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| ||||| |||||| | || || || |||| |||| ||||||||| | Sbjct 26902752 CGTCTCATCTTTGCCGGCAAGCAGCTTGAGGACGGTCGGACCCTGGCTGATTACAACATT 26902811 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||||||||| |||||||||||||| Sbjct 26902812 CAGAAAGAGTCCACTCTTCACCTTGT 26902837 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || ||||| || || || ||||| | || || || ||||| Sbjct 26902404 CAGATCTTTGTGAAGACACTCACTGGCAAGACCATCACCCTCGAGGTTGAGTCCTCTGAT 26902463 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | || || ||| ||||||||||| || || || ||| || ||| ||| Sbjct 26902464 ACAATTGACGATGTGAAGGCCAAGATTCAAGACAAGGAGGGCATTCCACCTGACCAGCAA 26902523 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| || || ||||| | || ||||| | || | || ||||||||| || Sbjct 26902524 CGTCTCATCTTTGCTGGCAAGCAACTAGAGGATGGCCGCACCCTCGCGGATTACAACATC 26902583 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || || |||||||| Sbjct 26902584 CAGAAGGAGTCCACCCTCCACCTTGT 26902609 >seq1 Length=43445878 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || |||||||| |||| ||||| || ||||| |||| Sbjct 9972042 AAGACCCTGACGGGGAAGACGATCACGCTGGAGGTGGAGTCCTCGGACACCATCGACAAC 9972101 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || || ||| ||| || | || |||||| Sbjct 9972102 GTGAAGGCGAAGATCCAGGACAAGGAGGGGATCCCGCCCGACCAGCAGCGGCTCATCTTC 9972161 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| || || | || | ||||| |||||| ||||||| ||||| Sbjct 9972162 GCCGGCAAGCAGCTGGAGGACGGGCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCG 9972221 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 9972222 ACCCTCCACCTGGT 9972235 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || |||||||| |||| ||||| || ||||| |||| Sbjct 9981250 AAGACCCTGACGGGGAAGACGATCACGCTGGAGGTGGAGTCCTCGGACACCATCGACAAC 9981309 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || || ||| ||| || | || |||||| Sbjct 9981310 GTGAAGGCGAAGATCCAGGACAAGGAGGGGATCCCGCCCGACCAGCAGCGGCTCATCTTC 9981369 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| || || | || | ||||| |||||| ||||||| ||||| Sbjct 9981370 GCCGGCAAGCAGCTGGAGGACGGGCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCG 9981429 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 9981430 ACCCTCCACCTGGT 9981443 Score = 84.2 bits (92), Expect = 5e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| |||| ||||| || ||||| || | Sbjct 21648287 AAGACCCTGACGGGGAAGACCATCACGCTGGAGGTGGAGAGCAGCGACACGATCCAGAAC 21648228 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||| | || || || || || || ||||||| || | || |||||| Sbjct 21648227 GTCAAGGCGAAGGTGCAGGACAAGGAGGGGATCCCGCCGGACCAGCAGCGGCTCATCTTC 21648168 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| || || | || ||||||| |||||| ||||||| ||||| Sbjct 21648167 GCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGGCCGACTACAACATCCAGAAGGAGTCG 21648108 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 21648107 ACGCTGCACCTGGT 21648094 >seq4 Length=32292456 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 |||||||| || || ||||| || || || ||||| ||||| || || || || Sbjct 28749308 CAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTTGAGTCCTCCGAT 28749367 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| |||||||| || || || || || |||||| || Sbjct 28749368 ACGATTGACAATGTGAAGGCTAAGATTCAGGATAAGGAGGGCATCCCTCCGGACCAGCAG 28749427 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | ||||||||||| || |||||| | || ||||| | ||| | || ||||| ||| || Sbjct 28749428 CGCCTTATCTTCGCTGGCAAGCAGCTTGAGGATGGGCGTACTCTCGCGGATTATAACATC 28749487 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || | |||||||| Sbjct 28749488 CAGAAGGAGTCCACCTTGCACCTTGT 28749513 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 || ||||| || || ||||| ||||||| || |||||||||| || | ||| || ||| Sbjct 3242653 ACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGTCCGTCCTCC 3242712 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||||| ||||||||||| ||||| || || Sbjct 3242713 AGCTGCTTCCCGGCGAAGATCAGCCGCTGCTG 3242744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181674103538648