Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21]
9,688 sequences; 362,063,720 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq5 111 4e-19
seq2 100 7e-16
seq6 96.9 8e-15
seq1 89.7 1e-12
seq4 87.8 4e-12
>seq5
Length=25164199
Score = 111 bits (122), Expect = 4e-19
Identities = 148/206 (72%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| ||| || ||||| || || || || ||| |||| || || || || |||
Sbjct 21087676 CAGATCTTTGTCAAGACTCTCACTGGCAAGACCATTACTCTGGAGGTTGAGAGCTCCGAC 21087617
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| |||| || ||| ||||| || || || ||||| ||| || ||| ||
Sbjct 21087616 ACCATCGACAATGTGAAGGCTAAGATCCAGGATAAGGAAGGTATTCCCCCAGACCAGCAG 21087557
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
| || ||||||||||| |||||| |||||||||| | || | ||||| |||||| |
Sbjct 21087556 CGCCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCGCCGACTACAACATT 21087497
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378
||||| ||||| || || ||||| ||
Sbjct 21087496 CAGAAGGAGTCCACCCTCCACCTGGT 21087471
Score = 87.8 bits (96), Expect = 4e-12
Identities = 143/206 (69%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
|| || ||| ||| || | || || || || ||||| | || || || ||||||
Sbjct 21088360 CAAATCTTTGTCAAGACCTTGACTGGCAAGACTATCACCCTTGAGGTTGAGTCTTCTGAT 21088301
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| | || || ||| |||||| || || || || || ||| |||||| ||
Sbjct 21088300 ACCATTGACAACGTTAAGGCAAAGATCCAGGACAAGGAGGGGATTCCCCCGGACCAGCAG 21088241
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
| || ||||| || || |||||| | || ||||| ||||| | || || |||||| ||
Sbjct 21088240 CGTCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGTAGGACCCTTGCTGACTACAACATC 21088181
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378
||||| ||||| || |||||||||||
Sbjct 21088180 CAGAAGGAGTCCACCCTTCACCTTGT 21088155
Score = 84.2 bits (92), Expect = 5e-11
Identities = 135/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
|| || || || || || || ||||| |||| ||||| || ||||| ||||
Sbjct 3097474 AAGACCCTGACGGGGAAGACCATCACGCTGGAGGTGGAGTCCTCGGACACCATCGACAAC 3097415
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|| ||| ||||| || || || ||||| || |||||| || | || ||||||
Sbjct 3097414 GTGAAGGCCAAGATCCAGGACAAGGAAGGGATCCCCCCGGACCAGCAGCGCCTCATCTTC 3097355
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
||||| |||||| | || || || | || | ||||| |||||| ||||||| |||||
Sbjct 3097354 GCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCC 3097295
Query 206365 ACTCTTCACCTTGT 206378
|| || ||||| ||
Sbjct 3097294 ACCCTCCACCTCGT 3097281
>seq2
Length=36083738
Score = 100 bits (110), Expect = 7e-16
Identities = 133/185 (72%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253
|| || || || ||||||||||| || || || || ||||| | || || |||
Sbjct 2262404 ACTGGGAAGACCATCACTTTGGAGGTTGAGAGCTCCGACACCATTGATAATGTGAAGGCC 2262345
Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313
||||| || || || || || ||| || ||| || | || |||||||| || |||
Sbjct 2262344 AAGATCCAGGACAAGGAGGGGATTCCCCCAGACCAGCAGCGTCTGATCTTCGCTGGCAAG 2262285
Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373
||| |||| |||||| | || ||||||| |||||| ||||||| ||||| || || |||
Sbjct 2262284 CAGCTGGAGGATGGACGCACCCTGGCCGACTACAACATCCAGAAGGAGTCCACCCTCCAC 2262225
Query 206374 CTTGT 206378
|| ||
Sbjct 2262224 CTGGT 2262220
>seq6
Length=30401905
Score = 96.9 bits (106), Expect = 8e-15
Identities = 145/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| || || | |||||||| || |||||| | || || || || |||
Sbjct 26902632 CAGATCTTTGTGAAGACCTTGACAGGAAAGACCATCACTCTCGAGGTCGAGTCGTCGGAC 26902691
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| |||| || ||| ||||| || || || || || || || ||| ||
Sbjct 26902692 ACGATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGGATCCCTCCTGACCAGCAG 26902751
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
| || ||||| ||||| |||||| | || || || |||| |||| ||||||||| |
Sbjct 26902752 CGTCTCATCTTTGCCGGCAAGCAGCTTGAGGACGGTCGGACCCTGGCTGATTACAACATT 26902811
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378
||||||||||| ||||||||||||||
Sbjct 26902812 CAGAAAGAGTCCACTCTTCACCTTGT 26902837
Score = 87.8 bits (96), Expect = 4e-12
Identities = 143/206 (69%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| || || ||||| || || || ||||| | || || || |||||
Sbjct 26902404 CAGATCTTTGTGAAGACACTCACTGGCAAGACCATCACCCTCGAGGTTGAGTCCTCTGAT 26902463
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
||| | || || ||| ||||||||||| || || || ||| || ||| |||
Sbjct 26902464 ACAATTGACGATGTGAAGGCCAAGATTCAAGACAAGGAGGGCATTCCACCTGACCAGCAA 26902523
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
| || ||||| || || ||||| | || ||||| | || | || ||||||||| ||
Sbjct 26902524 CGTCTCATCTTTGCTGGCAAGCAACTAGAGGATGGCCGCACCCTCGCGGATTACAACATC 26902583
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378
||||| ||||| || || ||||||||
Sbjct 26902584 CAGAAGGAGTCCACCCTCCACCTTGT 26902609
>seq1
Length=43445878
Score = 89.7 bits (98), Expect = 1e-12
Identities = 136/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
|| || || || || || |||||||| |||| ||||| || ||||| ||||
Sbjct 9972042 AAGACCCTGACGGGGAAGACGATCACGCTGGAGGTGGAGTCCTCGGACACCATCGACAAC 9972101
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|| ||| ||||| || || || || || || ||| ||| || | || ||||||
Sbjct 9972102 GTGAAGGCGAAGATCCAGGACAAGGAGGGGATCCCGCCCGACCAGCAGCGGCTCATCTTC 9972161
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
||||| |||||| |||| || || | || | ||||| |||||| ||||||| |||||
Sbjct 9972162 GCCGGCAAGCAGCTGGAGGACGGGCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCG 9972221
Query 206365 ACTCTTCACCTTGT 206378
|| || ||||| ||
Sbjct 9972222 ACCCTCCACCTGGT 9972235
Score = 89.7 bits (98), Expect = 1e-12
Identities = 136/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
|| || || || || || |||||||| |||| ||||| || ||||| ||||
Sbjct 9981250 AAGACCCTGACGGGGAAGACGATCACGCTGGAGGTGGAGTCCTCGGACACCATCGACAAC 9981309
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|| ||| ||||| || || || || || || ||| ||| || | || ||||||
Sbjct 9981310 GTGAAGGCGAAGATCCAGGACAAGGAGGGGATCCCGCCCGACCAGCAGCGGCTCATCTTC 9981369
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
||||| |||||| |||| || || | || | ||||| |||||| ||||||| |||||
Sbjct 9981370 GCCGGCAAGCAGCTGGAGGACGGGCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCG 9981429
Query 206365 ACTCTTCACCTTGT 206378
|| || ||||| ||
Sbjct 9981430 ACCCTCCACCTGGT 9981443
Score = 84.2 bits (92), Expect = 5e-11
Identities = 135/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
|| || || || || || || ||||| |||| ||||| || ||||| || |
Sbjct 21648287 AAGACCCTGACGGGGAAGACCATCACGCTGGAGGTGGAGAGCAGCGACACGATCCAGAAC 21648228
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|| ||| ||| | || || || || || || ||||||| || | || ||||||
Sbjct 21648227 GTCAAGGCGAAGGTGCAGGACAAGGAGGGGATCCCGCCGGACCAGCAGCGGCTCATCTTC 21648168
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
||||| |||||| |||| || || | || ||||||| |||||| ||||||| |||||
Sbjct 21648167 GCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGGCCGACTACAACATCCAGAAGGAGTCG 21648108
Query 206365 ACTCTTCACCTTGT 206378
|| || ||||| ||
Sbjct 21648107 ACGCTGCACCTGGT 21648094
>seq4
Length=32292456
Score = 87.8 bits (96), Expect = 4e-12
Identities = 143/206 (69%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
|||||||| || || ||||| || || || ||||| ||||| || || || ||
Sbjct 28749308 CAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTTGAGTCCTCCGAT 28749367
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| | || || ||| |||||||| || || || || || |||||| ||
Sbjct 28749368 ACGATTGACAATGTGAAGGCTAAGATTCAGGATAAGGAGGGCATCCCTCCGGACCAGCAG 28749427
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
| ||||||||||| || |||||| | || ||||| | ||| | || ||||| ||| ||
Sbjct 28749428 CGCCTTATCTTCGCTGGCAAGCAGCTTGAGGATGGGCGTACTCTCGCGGATTATAACATC 28749487
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378
||||| ||||| || | ||||||||
Sbjct 28749488 CAGAAGGAGTCCACCTTGCACCTTGT 28749513
Score = 86.0 bits (94), Expect = 1e-11
Identities = 74/92 (80%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823
|| ||||| || || ||||| ||||||| || |||||||||| || | ||| || |||
Sbjct 3242653 ACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGTCCGTCCTCC 3242712
Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855
|||||||| ||||||||||| ||||| || ||
Sbjct 3242713 AGCTGCTTCCCGGCGAAGATCAGCCGCTGCTG 3242744
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181674103538648
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |