Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21]
9,688 sequences; 362,063,720 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq5 107 3e-18
seq2 104 3e-17
seq6 84.2 3e-11
>seq5
Length=25164199
Score = 107 bits (118), Expect = 3e-18
Identities = 157/222 (71%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809
||| || ||||| | || | |||||| | ||| | || | ||||| |||| ||| ||
Sbjct 3366124 TCCACCTTGATCAACATAACGGGCAGTATCATTGAAAACACGTAGCATAGGAACAATCCC 3366183
Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869
||| || | |||||||||||| ||||| || || | || |||||||| || ||
Sbjct 3366184 ATTGGAGGTTCCATTTGTTCCACGGATATAGCTCCCAGTAGCTCGAATATTGTGAACTGA 3366243
Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929
|| ||| |||||||| || ||| || | |||||| ||||| || ||||| ||
Sbjct 3366244 TACACCAATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTCAAAGTATCATAGAT 3366303
Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971
||||| ||||| |||||| ||||| | ||| || |||||
Sbjct 3366304 TCCCTCAATGCTGTCATCTTTCATGCAGATAAGGAAGCAGCT 3366345
>seq2
Length=36083738
Score = 104 bits (114), Expect = 3e-17
Identities = 163/229 (71%), Gaps = 12/229 (5%)
Strand=Plus/Plus
Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809
||| || ||||| | || | ||||| | ||| | || | |||||| |||| ||| ||
Sbjct 34745657 TCCACCTTGATCAACATAACGTGCAGTATCATTGAAAACACGCAGCATGGGAACAATCCC 34745716
Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869
||||||| | ||||||||||| ||| ||||| || | || | |||||| ||| ||
Sbjct 34745717 ATTAGATGTTCCATTTGTTCCTCGAATGTAACTCCCAGTAGCTCTAATATTGTGAATTGA 34745776
Query 69870 TAGACCTATTCCTCCTGC-CATTTTAGAGATTA---GAGCACAACGTTTCAATGTGTCAT 69925
||||| ||||| || || ||||| | ||| |||||| | | |||||||
Sbjct 34745777 GAGACCAATTCCACCAGCACATTT----GCTTATGGTAGCACATTCTGAGAGAGTGTCAT 34745832
Query 69926 ATATACCCTCTATGCTATCATCTATCATGTTAAGA--AGAAAACAGCTA 69972
| || ||||| |||||||||||| ||||| |||| || || ||||||
Sbjct 34745833 AAATTCCCTCAATGCTATCATCTTTCATG--AAGATGAGGAAGCAGCTA 34745879
>seq6
Length=30401905
Score = 84.2 bits (92), Expect = 3e-11
Identities = 100/133 (75%), Gaps = 2/133 (2%)
Strand=Plus/Plus
Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675
|||||||||||| || || |||||||| || | || | ||||| || || |||||
Sbjct 1929672 GCAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAG 1929731
Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAAGA 39734
|| ||||| || || ||||| |||||||| || ||||| ||| || || || || ||||
Sbjct 1929732 GCCCGGCATGAGTCCGCGCTTCTTGAGCCAGAAGATGGC-GCAGAAGGAGCCCGAGAAGA 1929790
Query 39735 AGATGCCTTCTAC 39747
|||| || || ||
Sbjct 1929791 AGATCCCCTCGAC 1929803
Score = 84.2 bits (92), Expect = 3e-11
Identities = 100/133 (75%), Gaps = 2/133 (2%)
Strand=Plus/Minus
Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675
|||||||||||| || || |||||||| || | || | ||||| || || |||||
Sbjct 11442851 GCAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAG 11442792
Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAAGA 39734
|| ||||| || || ||||| |||||||| || ||||| ||| || || || || ||||
Sbjct 11442791 GCCCGGCATGAGCCCCCGCTTCTTGAGCCAGAAGATGGC-GCAGAAGGAGCCCGAGAAGA 11442733
Query 39735 AGATGCCTTCTAC 39747
|||| || || ||
Sbjct 11442732 AGATCCCCTCGAC 11442720
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686825615344320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |