Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21]
9,688 sequences; 362,063,720 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq5 100 2e-16
seq8 95.1 1e-14
seq6 95.1 1e-14
seq4 87.8 2e-12
>seq5
Length=25164199
Score = 100 bits (110), Expect = 2e-16
Identities = 152/214 (71%), Gaps = 3/214 (1%)
Strand=Plus/Plus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
|| || || || || || |||||||| | ||||| | ||||||||||| || ||
Sbjct 21088395 GTGGATTCCTTCTGGATGTTGTAGTCAGCAAGCGTGCGCCCATCTTCGAGCTGCTTGCCA 21088454
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
||| | ||||||||||| || ||||| || | ||||| || || ||||||| ||
Sbjct 21088455 GCGAAGATGAGACGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTT 21088514
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | || | || || | || ||||| || || ||||| | ||||| || |||||
Sbjct 21088515 ACATTGTCAATGGTATCCGAGGACTCAACCTCAAGGGTTATGGTCTTGCCAGTGAGAGTC 21088574
Query 27231 TTCACAAAGATTTGCATAGCTGCTAAAAATTTAT 27264
||||||||||| ||||| |||| || ||| |||
Sbjct 21088575 TTCACAAAGATCTGCAT--CTGC-AAGAATGTAT 21088605
>seq8
Length=23026653
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
|| || || || ||||| |||||||| | | |||| | || |||||||| || |||
Sbjct 4139844 GTGGACTCCTTCTGAATGTTGTAGTCAGCAAGGGTGCGACCTTCCTCGAGCTGCTTGCCG 4139903
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
||| | ||||| ||||| || || || || | ||||| || || |||||| |||
Sbjct 4139904 GCGAAGATGAGGCGCTGCTGGTCAGGAGGGATCCCCTCCTTGTCCTGGATCTTCGCCTTC 4139963
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | || | ||||| | || || || || || || || || ||||| ||||| ||
Sbjct 4139964 ACATTGTCGATGGTGTCCGAGGACTCCACCTCAAGGGTGATGGACTTGCCGGTCAGGGTC 4140023
Query 27231 TTCACAAAGATTTGCAT 27247
||||||||||| |||||
Sbjct 4140024 TTCACAAAGATCTGCAT 4140040
Score = 86.0 bits (94), Expect = 5e-12
Identities = 139/199 (70%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
|| || || || ||||| |||||||| | | |||| | || |||||||| || |||
Sbjct 4124580 GTGGACTCCTTCTGAATGTTGTAGTCAGCAAGGGTGCGTCCTTCCTCGAGCTGCTTGCCG 4124639
Query 27111 GCGTAAATGAGACGCTGT--TGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTT 27168
||| | ||||| |||| | || || || | | ||||| || || |||||| |
Sbjct 4124640 GCGAAGATGAGGCGCTCTGCTGGTCTGGGGAAATGCCCTCCTTGTCCTGGATCTTTGCCT 4124699
Query 27169 TCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAG 27228
||| | || | ||||||| | || || || || || || || ||||| |||||||
Sbjct 4124700 TCACATTGTCGATGGTGTCTGATGACTCCACCTCAAGGGTGATGGACTTGCCGGTCAGAG 4124759
Query 27229 TTTTCACAAAGATTTGCAT 27247
| ||||||||||| |||||
Sbjct 4124760 TCTTCACAAAGATCTGCAT 4124778
>seq6
Length=30401905
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
|| || || || || || ||||||||| || | |||| | || || ||||| || ||
Sbjct 27218331 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCA 27218272
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
||| | ||||||||||| || ||||| || | ||||| || || ||||||| ||
Sbjct 27218271 GCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 27218212
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | || | ||||| | || ||||| || || || || | ||||| || || ||
Sbjct 27218211 ACATTGTCAATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTC 27218152
Query 27231 TTCACAAAGATTTGCAT 27247
||||||||||| |||||
Sbjct 27218151 TTCACAAAGATCTGCAT 27218135
>seq4
Length=32292456
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080
||||| || | || | |||| || || || || || || || || || |||||
Sbjct 28749987 CCTCCACGAAGGCGGAGGACCAGGTGCAAGGTGGACTCCTTCTGGATGTTATAGTCAGCA 28749928
Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140
| | |||| |||| || ||||| || || ||| | ||||| ||||| || || || ||
Sbjct 28749927 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATGAGCCGCTGCTGGTCTGGAGGG 28749868
Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200
| ||||| ||||| ||||||| |||| | || | ||||| | || |||||
Sbjct 28749867 ATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTGTCGATCGTGTCAGAGGACTCAACC 28749808
Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
|| | || || | ||||| || || || ||||||||||| ||||||
Sbjct 28749807 TCCAAGGTGATCGTCTTGCCAGTAAGGGTCTTCACAAAGATCTGCATA 28749760
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424884226933056
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |