Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21] 9,688 sequences; 362,063,720 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq5 100 2e-16 seq8 95.1 1e-14 seq6 95.1 1e-14 seq4 87.8 2e-12 >seq5 Length=25164199 Score = 100 bits (110), Expect = 2e-16 Identities = 152/214 (71%), Gaps = 3/214 (1%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || |||||||| | ||||| | ||||||||||| || || Sbjct 21088395 GTGGATTCCTTCTGGATGTTGTAGTCAGCAAGCGTGCGCCCATCTTCGAGCTGCTTGCCA 21088454 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || ||||| || | ||||| || || ||||||| || Sbjct 21088455 GCGAAGATGAGACGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTT 21088514 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | || || | || ||||| || || ||||| | ||||| || ||||| Sbjct 21088515 ACATTGTCAATGGTATCCGAGGACTCAACCTCAAGGGTTATGGTCTTGCCAGTGAGAGTC 21088574 Query 27231 TTCACAAAGATTTGCATAGCTGCTAAAAATTTAT 27264 ||||||||||| ||||| |||| || ||| ||| Sbjct 21088575 TTCACAAAGATCTGCAT--CTGC-AAGAATGTAT 21088605 >seq8 Length=23026653 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || ||||| |||||||| | | |||| | || |||||||| || ||| Sbjct 4139844 GTGGACTCCTTCTGAATGTTGTAGTCAGCAAGGGTGCGACCTTCCTCGAGCTGCTTGCCG 4139903 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||| ||||| || || || || | ||||| || || |||||| ||| Sbjct 4139904 GCGAAGATGAGGCGCTGCTGGTCAGGAGGGATCCCCTCCTTGTCCTGGATCTTCGCCTTC 4139963 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | || || || || || || || || ||||| ||||| || Sbjct 4139964 ACATTGTCGATGGTGTCCGAGGACTCCACCTCAAGGGTGATGGACTTGCCGGTCAGGGTC 4140023 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 4140024 TTCACAAAGATCTGCAT 4140040 Score = 86.0 bits (94), Expect = 5e-12 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || ||||| |||||||| | | |||| | || |||||||| || ||| Sbjct 4124580 GTGGACTCCTTCTGAATGTTGTAGTCAGCAAGGGTGCGTCCTTCCTCGAGCTGCTTGCCG 4124639 Query 27111 GCGTAAATGAGACGCTGT--TGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTT 27168 ||| | ||||| |||| | || || || | | ||||| || || |||||| | Sbjct 4124640 GCGAAGATGAGGCGCTCTGCTGGTCTGGGGAAATGCCCTCCTTGTCCTGGATCTTTGCCT 4124699 Query 27169 TCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAG 27228 ||| | || | ||||||| | || || || || || || || ||||| ||||||| Sbjct 4124700 TCACATTGTCGATGGTGTCTGATGACTCCACCTCAAGGGTGATGGACTTGCCGGTCAGAG 4124759 Query 27229 TTTTCACAAAGATTTGCAT 27247 | ||||||||||| ||||| Sbjct 4124760 TCTTCACAAAGATCTGCAT 4124778 >seq6 Length=30401905 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| || | |||| | || || ||||| || || Sbjct 27218331 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCA 27218272 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || ||||| || | ||||| || || ||||||| || Sbjct 27218271 GCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 27218212 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | || ||||| || || || || | ||||| || || || Sbjct 27218211 ACATTGTCAATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTC 27218152 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 27218151 TTCACAAAGATCTGCAT 27218135 >seq4 Length=32292456 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | || | |||| || || || || || || || || || ||||| Sbjct 28749987 CCTCCACGAAGGCGGAGGACCAGGTGCAAGGTGGACTCCTTCTGGATGTTATAGTCAGCA 28749928 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| |||| || ||||| || || ||| | ||||| ||||| || || || || Sbjct 28749927 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATGAGCCGCTGCTGGTCTGGAGGG 28749868 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| ||||| ||||||| |||| | || | ||||| | || ||||| Sbjct 28749867 ATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTGTCGATCGTGTCAGAGGACTCAACC 28749808 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | || || | ||||| || || || ||||||||||| |||||| Sbjct 28749807 TCCAAGGTGATCGTCTTGCCAGTAAGGGTCTTCACAAAGATCTGCATA 28749760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424884226933056