Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21]
9,688 sequences; 362,063,720 total letters
Query= NC_027925.1
Length=496396
Score E
Sequences producing significant alignments: (Bits) Value
seq6 89.7 2e-12
>seq6
Length=30401905
Score = 89.7 bits (98), Expect = 2e-12
Identities = 125/174 (72%), Gaps = 1/174 (1%)
Strand=Plus/Minus
Query 443698 GCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCT 443757
|||||| |||||| || ||||| || || ||||| || | || || ||| ||
Sbjct 1929835 GCTTCGCCGAGCGGCTCGTCGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGCTCCT 1929776
Query 443758 TTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAAC 443817
| || ||||||||||| | || ||||| ||||| |||| || || ||||| |||
Sbjct 1929775 TCTGCG-CCATCTTCTGGCTCAAGAAGCGCGGACTCATGCCGGGCCTCACCTTCTCCAAC 1929717
Query 443818 GAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTAC 443871
|| || ||| || |||||||| | || |||||||||||||| || ||||||
Sbjct 1929716 GAGCTCATCTCCCGCGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTAC 1929663
Score = 89.7 bits (98), Expect = 2e-12
Identities = 125/174 (72%), Gaps = 1/174 (1%)
Strand=Plus/Plus
Query 443698 GCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCT 443757
|||||| |||||| || ||||| || || ||||| || | || || ||| ||
Sbjct 11442688 GCTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGCTCCT 11442747
Query 443758 TTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAAC 443817
| || ||||||||||| | || ||||| || || |||| || || ||||| |||
Sbjct 11442748 TCTGCG-CCATCTTCTGGCTCAAGAAGCGGGGGCTCATGCCGGGCCTCACCTTCTCCAAC 11442806
Query 443818 GAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTAC 443871
|| || ||| || |||||||| |||| |||||||||||||| || ||||||
Sbjct 11442807 GAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCCTCCTCTAC 11442860
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1588138843823160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |