Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21] 9,688 sequences; 362,063,720 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq6 114 2e-20 >seq6 Length=30401905 Score = 114 bits (126), Expect = 2e-20 Identities = 305/454 (67%), Gaps = 14/454 (3%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 ||||| ||||| |||||||| |||||||||||||| || | ||| ||| ||||| Sbjct 1929388 TAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCATC 1929447 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGG-TGGCACCCCAACTTGTTTGAGGAGACG 122489 |||| || || || |||| | || | |||||| | | | ||| || || Sbjct 1929448 CAGTCGAACGGGTTGGCGACGTTGTACATCTTCTTGCACCCGAGCGCCAT-GAGCAGCCG 1929506 Query 122490 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAG-GTTAC 122548 || | || |||| ||||||| | ||| ||| |||||| |||| ||| | || Sbjct 1929507 GTCGGCGACGAACTCGATGTACTGGCTCATGAGCTCGCCGTTCATCCCGACGAGCGCGAC 1929566 Query 122549 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 122608 ||||| ||||| ||| |||| | |||| || || || || || ||||| | | Sbjct 1929567 G-GGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCGTCGGCGACGATCTCCT 1929625 Query 122609 GGATAGTTTCGGTAGTGGGTCTATTACGCAAAG----TCTT-GAAGAGCTCCACGGCAAA 122663 ||| | | | || | || | ||| || || | || ||| || ||| || Sbjct 1929626 GGACGCGTGCC-TCGTCGAGCT-TGCCGCGGAGGAGGTCGTAGAGGAGG--CA-GGCGAA 1929680 Query 122664 CTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCAT 122723 || |||||| ||||| || ||||| || || || || |||||| || || ||||| Sbjct 1929681 GTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCAT 1929740 Query 122724 GAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTC 122783 ||| || |||||||| | ||| | || |||||||| || || ||||||||||| ||||| Sbjct 1929741 GAGTCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATCCCCTC 1929800 Query 122784 CACACACGCAAACGCAAAAAGGCGTTCGGCGAAG 122817 || || || || || | || || ||||||||| Sbjct 1929801 GACGCAGGCGAAGGCGACGAGCCGCTCGGCGAAG 1929834 Score = 114 bits (126), Expect = 2e-20 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| || ||||| || ||||| || || || || |||||| || || |||||||| || Sbjct 11442836 GTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGCCC 11442777 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 ||||||||| | ||| | || |||||||| || || ||||||||||| ||||| || || Sbjct 11442776 CCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATCCCCTCGACGCA 11442717 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAG 122817 || || || | ||||| ||||||||| Sbjct 11442716 GGCGAAGGCGACGAGGCGCTCGGCGAAG 11442689 Score = 109 bits (120), Expect = 7e-19 Identities = 197/287 (69%), Gaps = 12/287 (4%) Strand=Plus/Minus Query 11453 TCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCA 11512 |||||||| || || | || | || ||| |||||||| | | || ||||| ||| Sbjct 26807411 TCAAAACGTCCAGGTCTGAGTAAAGCAGAATCCAGGATATCAGCCCTGTTGGTGGCAGCA 26807352 Query 11513 ATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAATT 11572 ||||| | || ||||| | ||||| ||||||||||| || || || ||||| | Sbjct 26807351 ATAACAATGATTCCAGTGTTCCCCTCAAAACCATCCATCTCAGTCAGCAACTGATTCAAA 26807292 Query 11573 GTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCA-CTG-----CGTTGCTTGCCC 11626 || || || || ||||||||| | ||||||| | ||| | |||| | || Sbjct 26807291 GTCTGCTCCCTTTCATCATTTCC------ACCACCAATACCTGTTCCTCTTTGCCTTCCA 26807238 Query 11627 ACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 11686 || |||||||| ||||||| || || || || || ||| || || | | || Sbjct 26807237 ACAGCATCAATTTCATCAACAAATACTATGCAAGGAGCATTCTCCTTTGCCTTCTTGAAA 26807178 Query 11687 AGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAA 11733 ||||| ||||||| |||||| || || ||||||||||||||||| Sbjct 26807177 AGATCACGAACCCGGGAGGCACCAACTCCCACAAACATCTCCACAAA 26807131 Score = 96.9 bits (106), Expect = 4e-15 Identities = 216/321 (67%), Gaps = 10/321 (3%) Strand=Plus/Minus Query 11538 CAAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTG 11597 |||| ||||||||||| || | | || || || || || || |||||||||||| | Sbjct 30123061 CAAATCCATCCATCTCAGTCAAGAGCTGGTTGATGGTCTGCTCCCTCTCATCATTTCCC- 30123003 Query 11598 GCATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAAT 11655 | | | | ||||||| || ||| | || || ||||||||||||||||||||||| || Sbjct 30123002 -CCTCCGAGCCCAGCACCACGCTGCCTCCCGACGGCATCAATCTCATCAATGAAGACGAT 30122944 Query 11656 ACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACC 11715 || || || | ||| | || || || || | ||||| ||| || ||||| Sbjct 30122943 GCAAGGGGCCTTGGCCTTGGCCTTCTCGAACAGGTCCCTGACCCTGGAGGCGCCGACACC 30122884 Query 11716 AACAAACATCTCCACAAA---GTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTC 11772 || |||| ||| || || | |||||| || | || ||| || || | || Sbjct 30122883 GACGAACAGCTCGACGAACTCGGACGCGGCACAGGA---GAAGAAGGGCACTCCGGCCTC 30122827 Query 11773 ACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGC 11832 || |||| ||| || || || || ||||| || || || ||| || |||| ||| Sbjct 30122826 CCCGGCGACGGCACGCGCCAGCAGTGTCTTCCCGGTCCCGGGCGGGCCGACGAGCAGGCA 30122767 Query 11833 GCCTCGGGGGATCTTGGCACC 11853 || |||||||||||| || Sbjct 30122766 TCCCTTGGGGATCTTGGCCCC 30122746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627955945324800