Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21]
9,688 sequences; 362,063,720 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq6 185 1e-41
>seq6
Length=30401905
Score = 185 bits (204), Expect = 1e-41
Identities = 322/457 (70%), Gaps = 20/457 (4%)
Strand=Plus/Plus
Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787
||||| || || ||||||||||||||||| ||||| || | || | ||| ||||||
Sbjct 1929388 TAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCATC 1929447
Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846
| || || ||||| ||| | || | || |||| || | | |||| || ||
Sbjct 1929448 CAGTCGAACGGGTTGGCGACGTTGTACATCTTCTTGCAC-CCGAGCGCCATGAGCAGCCG 1929506
Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAG-GTTAC 129905
|| | |||| |||| ||||||| ||| |||| |||||| |||| ||| | ||
Sbjct 1929507 GTCGGCGACGAACTCGATGTACTGGCTCATGAGCTCGCCGTTCATCCCGACGAGCGCGAC 1929566
Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965
||||||||||| ||| |||| || |||| |||||||| || || ||||| | |
Sbjct 1929567 G-GGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCGTCGGCGACGATCTCCT 1929625
Query 129966 GAATGGTCTCCGTGCCAGGTCTA--TTGC---GCA--AAGTCTT-GAAGAGTTCCACGGC 130017
| | | |||||| ||| | |||| | | | ||| | || ||| || |||
Sbjct 1929626 GGACG-----CGTGCCTCGTCGAGCTTGCCGCGGAGGAGGTCGTAGAGGAGG--CA-GGC 1929677
Query 130018 AAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGG 130077
|| || |||||| |||||||| ||||||||||| || || |||||| || || ||
Sbjct 1929678 GAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGG 1929737
Query 130078 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCC 130137
|||||| || |||||||| | |||||| || || || || ||||| ||||||||||||||
Sbjct 1929738 CATGAGTCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATCCC 1929797
Query 130138 CTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAG 130174
||| || || ||||| || | ||| ||||| || |||
Sbjct 1929798 CTCGACGCAGGCGAAGGCGACGAGCCGCTCGGCGAAG 1929834
Score = 170 bits (188), Expect = 2e-37
Identities = 315/452 (70%), Gaps = 10/452 (2%)
Strand=Plus/Minus
Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787
||||| || || ||||||||||||||||| ||||| || | || | ||| ||||||
Sbjct 11443135 TAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCATC 11443076
Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846
| || || ||||| ||| | || | || ||| || | | ||||||| ||
Sbjct 11443075 CAGTCGAAGGGGTTGGCGACGTTGTACATCTTCTTGCAG-CCGAGCGCCATGAGGAGGCG 11443017
Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAG-GTTAC 129905
|| | |||| |||| ||||||| ||| ||| |||||| |||| ||| | ||
Sbjct 11443016 GTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGAC 11442957
Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965
||||||||||| ||| |||| || |||| ||||| || || || ||||| ||
Sbjct 11442956 G-GGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCGACGGCGTCGGCGACGATCTCGC 11442898
Query 129966 GAATGGTCTCCGTGCCAGGTCTATTGCGCA--AAGTCTT-GAAGAGTTCCACGGCAAACT 130022
| | | | || | | | | ||| | | ||| | || ||| || ||| || |
Sbjct 11442897 GGACGCGCGCCTCGTCGAGCTTGCCGCGGAGGAGGTCGTAGAGGAGG--CA-GGCGAAGT 11442841
Query 130023 CCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 130082
| ||| || |||||||| ||||||||||| || || |||||| || || |||||||
Sbjct 11442840 CGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGA 11442781
Query 130083 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 130142
| ||||||||||| | |||||| || || || || ||||| ||||||||||||||||| |
Sbjct 11442780 GCCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATCCCCTCGA 11442721
Query 130143 CACACGCGAACGCAAAGAGACGCTCAGCAAAG 130174
| || ||||| || | ||| ||||| || |||
Sbjct 11442720 CGCAGGCGAAGGCGACGAGGCGCTCGGCGAAG 11442689
Score = 122 bits (134), Expect = 1e-22
Identities = 281/418 (67%), Gaps = 4/418 (1%)
Strand=Plus/Minus
Query 14051 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 14110
||||||| || ||||| || | || || || || || || ||| || | ||||
Sbjct 30123161 ACGGTGACCTGCCGATCGAACCTCCCAGGCCGAAGAAGCGCCGAGTCGAGCACATCAGGC 30123102
Query 14111 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTC 14170
| ||| ||||| |||| |||| || || | | |||| |||||||||||||||
Sbjct 30123101 CTGTTTGTCGCGGCGAGCACAATGACACCACTGTTCCCGGCAAATCCATCCATCTCAGTC 30123042
Query 14171 AAGAGTTGATTGATGGTTTGTTCGCGTTCATCA-TTCGCAGGCATACCACCCGCACTGCG 14229
||||| || |||||||| || || | |||||| ||| | | | | || |||| ||
Sbjct 30123041 AAGAGCTGGTTGATGGTCTGCTCCCTCTCATCATTTCCCCCTCCGAGC-CCAGCACCACG 30122983
Query 14230 TTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGC 14289
||| | |||||||| ||||| ||||| ||||| ||||| || || || | |||
Sbjct 30122982 CTGCCTCCCGACGGCATCAATCTCATCAATGAAGACGATGCAAGGGGCCTTGGCCTTGGC 30122923
Query 14290 AACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATT 14349
|| || | || | || || ||| |||||||| || |||| ||| || || |
Sbjct 30122922 CTTCTCGAACAGGTCCCTGACCCTGGAGGCGCCGACACCGACGAACAGCTCGACGAACTC 30122863
Query 14350 GGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAG 14409
|| |||| ||| || |||||| || | || || |||| ||| || || || ||
Sbjct 30122862 GGACGCGGCACAGGAGAAGAAGGGCACTCCGGCCTCCCCGGCGACGGCACGCGCCAGCAG 30122803
Query 14410 GGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGT-GGGATCCTGGCACC 14466
|||||||| ||||| || || |||| | |||| | | | |||||| |||| ||
Sbjct 30122802 TGTCTTCCCGGTCCCGGGCGGGCCGACGAGCA-GGCATCCCTTGGGGATCTTGGCCCC 30122746
Score = 82.4 bits (90), Expect = 9e-11
Identities = 171/252 (68%), Gaps = 2/252 (1%)
Strand=Plus/Minus
Query 14096 TCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAG 14155
|| ||||||||| | ||| || || || || |||| ||| || || | |||||
Sbjct 26807381 TCCAGGATATCAGCCCTGTTGGTGGCAGCAATAACAATGATTCCAGTGTTCCCCTCAAAA 26807322
Query 14156 CCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATA 14215
|||||||||||||||| | ||||| | || || || | ||||||||| || |
Sbjct 26807321 CCATCCATCTCAGTCAGCAACTGATTCAAAGTCTGCTCCCTTTCATCATTTCCACCACCA 26807262
Query 14216 CCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGT 14275
||| | | | |||| | || || || ||||||||||| | || || || || ||
Sbjct 26807261 ATACCTGTTCCTCTTTGCCTTCCAACAGCATCAATTTCATCAACAAATACTATGCAAGGA 26807202
Query 14276 TGATT-TTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAA 14334
||| | | | | ||| ||| | ||| || || | |||||| || ||||||||
Sbjct 26807201 GCATTCTCCTTTGCCTTCTTGAAA-AGATCACGAACCCGGGAGGCACCAACTCCCACAAA 26807143
Query 14335 CATCTCCACAAA 14346
||||||||||||
Sbjct 26807142 CATCTCCACAAA 26807131
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618360307497280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |