Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21] 9,688 sequences; 362,063,720 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq6 185 1e-41 >seq6 Length=30401905 Score = 185 bits (204), Expect = 1e-41 Identities = 322/457 (70%), Gaps = 20/457 (4%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| || || ||||||||||||||||| ||||| || | || | ||| |||||| Sbjct 1929388 TAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCATC 1929447 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 | || || ||||| ||| | || | || |||| || | | |||| || || Sbjct 1929448 CAGTCGAACGGGTTGGCGACGTTGTACATCTTCTTGCAC-CCGAGCGCCATGAGCAGCCG 1929506 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAG-GTTAC 129905 || | |||| |||| ||||||| ||| |||| |||||| |||| ||| | || Sbjct 1929507 GTCGGCGACGAACTCGATGTACTGGCTCATGAGCTCGCCGTTCATCCCGACGAGCGCGAC 1929566 Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965 ||||||||||| ||| |||| || |||| |||||||| || || ||||| | | Sbjct 1929567 G-GGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCGTCGGCGACGATCTCCT 1929625 Query 129966 GAATGGTCTCCGTGCCAGGTCTA--TTGC---GCA--AAGTCTT-GAAGAGTTCCACGGC 130017 | | | |||||| ||| | |||| | | | ||| | || ||| || ||| Sbjct 1929626 GGACG-----CGTGCCTCGTCGAGCTTGCCGCGGAGGAGGTCGTAGAGGAGG--CA-GGC 1929677 Query 130018 AAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGG 130077 || || |||||| |||||||| ||||||||||| || || |||||| || || || Sbjct 1929678 GAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGG 1929737 Query 130078 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCC 130137 |||||| || |||||||| | |||||| || || || || ||||| |||||||||||||| Sbjct 1929738 CATGAGTCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATCCC 1929797 Query 130138 CTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAG 130174 ||| || || ||||| || | ||| ||||| || ||| Sbjct 1929798 CTCGACGCAGGCGAAGGCGACGAGCCGCTCGGCGAAG 1929834 Score = 170 bits (188), Expect = 2e-37 Identities = 315/452 (70%), Gaps = 10/452 (2%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| || || ||||||||||||||||| ||||| || | || | ||| |||||| Sbjct 11443135 TAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCATC 11443076 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 | || || ||||| ||| | || | || ||| || | | ||||||| || Sbjct 11443075 CAGTCGAAGGGGTTGGCGACGTTGTACATCTTCTTGCAG-CCGAGCGCCATGAGGAGGCG 11443017 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAG-GTTAC 129905 || | |||| |||| ||||||| ||| ||| |||||| |||| ||| | || Sbjct 11443016 GTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGAC 11442957 Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965 ||||||||||| ||| |||| || |||| ||||| || || || ||||| || Sbjct 11442956 G-GGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCGACGGCGTCGGCGACGATCTCGC 11442898 Query 129966 GAATGGTCTCCGTGCCAGGTCTATTGCGCA--AAGTCTT-GAAGAGTTCCACGGCAAACT 130022 | | | | || | | | | ||| | | ||| | || ||| || ||| || | Sbjct 11442897 GGACGCGCGCCTCGTCGAGCTTGCCGCGGAGGAGGTCGTAGAGGAGG--CA-GGCGAAGT 11442841 Query 130023 CCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 130082 | ||| || |||||||| ||||||||||| || || |||||| || || ||||||| Sbjct 11442840 CGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGA 11442781 Query 130083 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 130142 | ||||||||||| | |||||| || || || || ||||| ||||||||||||||||| | Sbjct 11442780 GCCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATCCCCTCGA 11442721 Query 130143 CACACGCGAACGCAAAGAGACGCTCAGCAAAG 130174 | || ||||| || | ||| ||||| || ||| Sbjct 11442720 CGCAGGCGAAGGCGACGAGGCGCTCGGCGAAG 11442689 Score = 122 bits (134), Expect = 1e-22 Identities = 281/418 (67%), Gaps = 4/418 (1%) Strand=Plus/Minus Query 14051 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 14110 ||||||| || ||||| || | || || || || || || ||| || | |||| Sbjct 30123161 ACGGTGACCTGCCGATCGAACCTCCCAGGCCGAAGAAGCGCCGAGTCGAGCACATCAGGC 30123102 Query 14111 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTC 14170 | ||| ||||| |||| |||| || || | | |||| ||||||||||||||| Sbjct 30123101 CTGTTTGTCGCGGCGAGCACAATGACACCACTGTTCCCGGCAAATCCATCCATCTCAGTC 30123042 Query 14171 AAGAGTTGATTGATGGTTTGTTCGCGTTCATCA-TTCGCAGGCATACCACCCGCACTGCG 14229 ||||| || |||||||| || || | |||||| ||| | | | | || |||| || Sbjct 30123041 AAGAGCTGGTTGATGGTCTGCTCCCTCTCATCATTTCCCCCTCCGAGC-CCAGCACCACG 30122983 Query 14230 TTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGC 14289 ||| | |||||||| ||||| ||||| ||||| ||||| || || || | ||| Sbjct 30122982 CTGCCTCCCGACGGCATCAATCTCATCAATGAAGACGATGCAAGGGGCCTTGGCCTTGGC 30122923 Query 14290 AACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATT 14349 || || | || | || || ||| |||||||| || |||| ||| || || | Sbjct 30122922 CTTCTCGAACAGGTCCCTGACCCTGGAGGCGCCGACACCGACGAACAGCTCGACGAACTC 30122863 Query 14350 GGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAG 14409 || |||| ||| || |||||| || | || || |||| ||| || || || || Sbjct 30122862 GGACGCGGCACAGGAGAAGAAGGGCACTCCGGCCTCCCCGGCGACGGCACGCGCCAGCAG 30122803 Query 14410 GGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGT-GGGATCCTGGCACC 14466 |||||||| ||||| || || |||| | |||| | | | |||||| |||| || Sbjct 30122802 TGTCTTCCCGGTCCCGGGCGGGCCGACGAGCA-GGCATCCCTTGGGGATCTTGGCCCC 30122746 Score = 82.4 bits (90), Expect = 9e-11 Identities = 171/252 (68%), Gaps = 2/252 (1%) Strand=Plus/Minus Query 14096 TCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAG 14155 || ||||||||| | ||| || || || || |||| ||| || || | ||||| Sbjct 26807381 TCCAGGATATCAGCCCTGTTGGTGGCAGCAATAACAATGATTCCAGTGTTCCCCTCAAAA 26807322 Query 14156 CCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATA 14215 |||||||||||||||| | ||||| | || || || | ||||||||| || | Sbjct 26807321 CCATCCATCTCAGTCAGCAACTGATTCAAAGTCTGCTCCCTTTCATCATTTCCACCACCA 26807262 Query 14216 CCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGT 14275 ||| | | | |||| | || || || ||||||||||| | || || || || || Sbjct 26807261 ATACCTGTTCCTCTTTGCCTTCCAACAGCATCAATTTCATCAACAAATACTATGCAAGGA 26807202 Query 14276 TGATT-TTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAA 14334 ||| | | | | ||| ||| | ||| || || | |||||| || |||||||| Sbjct 26807201 GCATTCTCCTTTGCCTTCTTGAAA-AGATCACGAACCCGGGAGGCACCAACTCCCACAAA 26807143 Query 14335 CATCTCCACAAA 14346 |||||||||||| Sbjct 26807142 CATCTCCACAAA 26807131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618360307497280