Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21] 9,688 sequences; 362,063,720 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq6 150 2e-31 >seq6 Length=30401905 Score = 150 bits (166), Expect = 2e-31 Identities = 122/148 (82%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 ||| || ||||| ||| |||| || || || || ||||| ||||||||||| || ||||| Sbjct 1929834 CTTCGCCGAGCGGCTCGTCGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGCTCCTT 1929775 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 |||||| || | |||||||||||||| || |||||||| || ||| |||||||||||| Sbjct 1929774 CTGCGCCATCTTCTGGCTCAAGAAGCGCGGACTCATGCCGGGCCTCACCTTCTCCAACGA 1929715 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||| ||||| || |||||||| |||||| Sbjct 1929714 GCTCATCTCCCGCGACGAGGGCCTCCAC 1929687 Score = 145 bits (160), Expect = 9e-30 Identities = 121/148 (82%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 ||| || ||||| ||| |||| || || || || ||||| ||||||||||| || ||||| Sbjct 11442689 CTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGCTCCTT 11442748 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 |||||| || | |||||||||||||| || |||||||| || ||| |||||||||||| Sbjct 11442749 CTGCGCCATCTTCTGGCTCAAGAAGCGGGGGCTCATGCCGGGCCTCACCTTCTCCAACGA 11442808 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||| ||||| || |||||||| || ||| Sbjct 11442809 GCTCATCTCCCGCGACGAGGGCCTGCAC 11442836 Score = 123 bits (136), Expect = 3e-23 Identities = 279/410 (68%), Gaps = 12/410 (3%) Strand=Plus/Minus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 ||||| || | || || ||||| ||||| || || | |||| | || |||||| Sbjct 30123149 CGATCGAACCTCCCAGGCCGAAGAAGCGCCGAGTCGAGCACATCAGGCCTGTTTGTCGCG 30123090 Query 9584 GCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGT 9641 |||| |||| | ||| |||| | |||| ||||||||||| ||||| || |||| Sbjct 30123089 GCGAGCACAATGACACCACTGTTCCCGG--CAAATCCATCCATCTCAGTCAAGAGCTGGT 30123032 Query 9642 TAATAGTTTGTTCCCGTTCATCATT-CGCTGGCATACCACCAGCACTGCGTTGCTTTCCC 9700 | || || || |||| |||||||| | | | | | ||||||| || ||| | || Sbjct 30123031 TGATGGTCTGCTCCCTCTCATCATTTCCCCCTCCGAGC-CCAGCACCACGCTGCCTCCCG 30122973 Query 9701 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACT--TCAA 9758 |||||||||||||||||||||||||||||||| || | || || | || || | Sbjct 30122972 ACGGCATCAATCTCATCAATGAAGACGATGCAAGG--GGCCTTGGCCTTGGCCTTCTCGA 30122915 Query 9759 AGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 9818 | || |||| || | |||||| ||||| || |||| ||| || || | | |||| Sbjct 30122914 ACAGGTCCCTGACCCTGGAGGCGCCGACACCGACGAACAGCTCGACGAACTCGGACGCGG 30122855 Query 9819 AACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTAC 9878 ||| || |||||| || | || || || | ||| || || || || ||||| | Sbjct 30122854 CACAGGAGAAGAAGGGCACTCCGGCCTCCCCGGCGACGGCACGCGCCAGCAGTGTCTTCC 30122795 Query 9879 CCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGT-GGAATCTTGGCGCC 9927 | || || ||| || |||| | |||| | | | || |||||||| || Sbjct 30122794 CGGTCCCGGGCGGGCCGACGAGCA-GGCATCCCTTGGGGATCTTGGCCCC 30122746 Score = 102 bits (112), Expect = 1e-16 Identities = 231/341 (68%), Gaps = 16/341 (5%) Strand=Plus/Minus Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9615 ||| ||||||||| | | || || || || || |||| || || || | ||||| Sbjct 26807382 ATCCAGGATATCAGCCCTGTTGGTGGCAGCAATAACAATGATTCCAGTGTTCCCCTCAAA 26807323 Query 9616 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9675 |||||||||||| |||| | || || | ||| || |||| ||||||||| | Sbjct 26807322 ACCATCCATCTCAGTCAGCAACTGATTCAAAGTCTGCTCCCTTTCATCATTTCC------ 26807269 Query 9676 ACCACCAGCA-CTG-----CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGAT 9729 ||||||| | ||| | |||| |||| || |||||||| ||||||| || || || Sbjct 26807268 ACCACCAATACCTGTTCCTCTTTGCCTTCCAACAGCATCAATTTCATCAACAAATACTAT 26807209 Query 9730 GCATGGTTGATTTTCGCGAG-CGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACAC 9788 ||| || ||| || | | ||| ||| ||||| || || || ||| || || | Sbjct 26807208 GCAAGGAGCATTCTCCTTTGCCTTCTTGAAA-AGATCACGAACCCGGGAGGCACCAACTC 26807150 Query 9789 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCA 9847 | ||||||||||||||||| | | | | | || | || || || ||| || ||| Sbjct 26807149 CCACAAACATCTCCACAAACTCGGATCCTG-ATATCGAGAAAAATGGCACACCAGCTTCT 26807091 Query 9848 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 || ||||| || ||| || | ||||||||| || || || Sbjct 26807090 CCTGCAATAGCCTTGGCAAGCAAAGTCTTACCAGTTCCAGG 26807050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583190167117120