Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21]
9,688 sequences; 362,063,720 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq6 150 2e-31
>seq6
Length=30401905
Score = 150 bits (166), Expect = 2e-31
Identities = 122/148 (82%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856
||| || ||||| ||| |||| || || || || ||||| ||||||||||| || |||||
Sbjct 1929834 CTTCGCCGAGCGGCTCGTCGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGCTCCTT 1929775
Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916
|||||| || | |||||||||||||| || |||||||| || ||| ||||||||||||
Sbjct 1929774 CTGCGCCATCTTCTGGCTCAAGAAGCGCGGACTCATGCCGGGCCTCACCTTCTCCAACGA 1929715
Query 94917 GCTTATCTCTCGTGACGAGGGACTCCAC 94944
||| ||||| || |||||||| ||||||
Sbjct 1929714 GCTCATCTCCCGCGACGAGGGCCTCCAC 1929687
Score = 145 bits (160), Expect = 9e-30
Identities = 121/148 (82%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856
||| || ||||| ||| |||| || || || || ||||| ||||||||||| || |||||
Sbjct 11442689 CTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGCTCCTT 11442748
Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916
|||||| || | |||||||||||||| || |||||||| || ||| ||||||||||||
Sbjct 11442749 CTGCGCCATCTTCTGGCTCAAGAAGCGGGGGCTCATGCCGGGCCTCACCTTCTCCAACGA 11442808
Query 94917 GCTTATCTCTCGTGACGAGGGACTCCAC 94944
||| ||||| || |||||||| || |||
Sbjct 11442809 GCTCATCTCCCGCGACGAGGGCCTGCAC 11442836
Score = 123 bits (136), Expect = 3e-23
Identities = 279/410 (68%), Gaps = 12/410 (3%)
Strand=Plus/Minus
Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583
||||| || | || || ||||| ||||| || || | |||| | || ||||||
Sbjct 30123149 CGATCGAACCTCCCAGGCCGAAGAAGCGCCGAGTCGAGCACATCAGGCCTGTTTGTCGCG 30123090
Query 9584 GCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGT 9641
|||| |||| | ||| |||| | |||| ||||||||||| ||||| || ||||
Sbjct 30123089 GCGAGCACAATGACACCACTGTTCCCGG--CAAATCCATCCATCTCAGTCAAGAGCTGGT 30123032
Query 9642 TAATAGTTTGTTCCCGTTCATCATT-CGCTGGCATACCACCAGCACTGCGTTGCTTTCCC 9700
| || || || |||| |||||||| | | | | | ||||||| || ||| | ||
Sbjct 30123031 TGATGGTCTGCTCCCTCTCATCATTTCCCCCTCCGAGC-CCAGCACCACGCTGCCTCCCG 30122973
Query 9701 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACT--TCAA 9758
|||||||||||||||||||||||||||||||| || | || || | || || |
Sbjct 30122972 ACGGCATCAATCTCATCAATGAAGACGATGCAAGG--GGCCTTGGCCTTGGCCTTCTCGA 30122915
Query 9759 AGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 9818
| || |||| || | |||||| ||||| || |||| ||| || || | | ||||
Sbjct 30122914 ACAGGTCCCTGACCCTGGAGGCGCCGACACCGACGAACAGCTCGACGAACTCGGACGCGG 30122855
Query 9819 AACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTAC 9878
||| || |||||| || | || || || | ||| || || || || ||||| |
Sbjct 30122854 CACAGGAGAAGAAGGGCACTCCGGCCTCCCCGGCGACGGCACGCGCCAGCAGTGTCTTCC 30122795
Query 9879 CCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGT-GGAATCTTGGCGCC 9927
| || || ||| || |||| | |||| | | | || |||||||| ||
Sbjct 30122794 CGGTCCCGGGCGGGCCGACGAGCA-GGCATCCCTTGGGGATCTTGGCCCC 30122746
Score = 102 bits (112), Expect = 1e-16
Identities = 231/341 (68%), Gaps = 16/341 (5%)
Strand=Plus/Minus
Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9615
||| ||||||||| | | || || || || || |||| || || || | |||||
Sbjct 26807382 ATCCAGGATATCAGCCCTGTTGGTGGCAGCAATAACAATGATTCCAGTGTTCCCCTCAAA 26807323
Query 9616 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9675
|||||||||||| |||| | || || | ||| || |||| ||||||||| |
Sbjct 26807322 ACCATCCATCTCAGTCAGCAACTGATTCAAAGTCTGCTCCCTTTCATCATTTCC------ 26807269
Query 9676 ACCACCAGCA-CTG-----CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGAT 9729
||||||| | ||| | |||| |||| || |||||||| ||||||| || || ||
Sbjct 26807268 ACCACCAATACCTGTTCCTCTTTGCCTTCCAACAGCATCAATTTCATCAACAAATACTAT 26807209
Query 9730 GCATGGTTGATTTTCGCGAG-CGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACAC 9788
||| || ||| || | | ||| ||| ||||| || || || ||| || || |
Sbjct 26807208 GCAAGGAGCATTCTCCTTTGCCTTCTTGAAA-AGATCACGAACCCGGGAGGCACCAACTC 26807150
Query 9789 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCA 9847
| ||||||||||||||||| | | | | | || | || || || ||| || |||
Sbjct 26807149 CCACAAACATCTCCACAAACTCGGATCCTG-ATATCGAGAAAAATGGCACACCAGCTTCT 26807091
Query 9848 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888
|| ||||| || ||| || | ||||||||| || || ||
Sbjct 26807090 CCTGCAATAGCCTTGGCAAGCAAAGTCTTACCAGTTCCAGG 26807050
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583190167117120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |