Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21]
9,688 sequences; 362,063,720 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq6 208 8e-49
>seq6
Length=30401905
Score = 208 bits (230), Expect = 8e-49
Identities = 575/863 (67%), Gaps = 29/863 (3%)
Strand=Plus/Minus
Query 59572 GGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGG 59631
|||||||| | | |||| | || ||||| ||| | | || |||||| | | ||||
Sbjct 1930237 GGTACCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCGTTCTGGACGGCGGAGG 1930178
Query 59632 AGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAA---GCTCAATTACGACGAGCAGC 59688
|| | |||||| ||| ||| | | |||||| ||| |||||||| |
Sbjct 1930177 AGGTGGACCTCTCCGCCGACGCGCGCCACTGGGACGCCGCGCTGTCGCCCGACGAGCGCC 1930118
Query 59689 ATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATA 59748
| ||| || || || |||||||||||||| ||||| || ||| | || ||
Sbjct 1930117 ACTTCGTCTCCCACGTGCTCGCCTTCTTCGCGGCCTCCGATGGCATCGTGCTCGAGAACC 1930058
Query 59749 TAGAC---ATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGT 59805
| | | | | | | ||| || || ||| | |||||||| || | ||||||| ||
Sbjct 1930057 TCGCCTCCAGGTTCATGTCC---GACGTGCAGGTCGCCGAGGCGCGCGCCTTCTACGGGT 1930001
Query 59806 ATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTG 59864
||| ||| || |||| |||||||| |||| ||||||||| || |||| | ||
Sbjct 1930000 TCCAGATCGC-CATCGAGAACATCCACTCGGAGATGTACTCGCTGCTGCTCGAGACGTAC 1929942
Query 59865 GTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTT 59924
|| || | ||||||| | || ||||| ||||| || || |||||| ||
Sbjct 1929941 ATCCGCGACGACGTCGAGAAGGACCGCCTCTTCCGCGCCATCGACACCGTCCCCGCCGTG 1929882
Query 59925 AAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTG-GAGCATCATTTGCACAAC 59982
| || || || |||||||||| ||||| || | | |||| || || | |
Sbjct 1929881 CGCCGCAAGGCCGACTGGGCCATGCGATGGATCGACGGCGGCGAGCGC--TTCGCCGAGC 1929824
Query 59983 GTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTT 60042
| ||| | || || || ||||| || || ||||||||||| ||||| ||||| || || |
Sbjct 1929823 GGCTCGTCGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGCTCCTTCTGCGCCATCT 1929764
Query 60043 TCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCC 60102
|||||||||| ||||| || |||||||||||||| | |||||||||||||| || ||||
Sbjct 1929763 TCTGGCTCAAGAAGCGCGGACTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCC 1929704
Query 60103 GGGACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTCACACCTATTGGAAAAA 60161
| |||||||||||||| || || || || | ||||| | ||| | ||
Sbjct 1929703 GCGACGAGGGCCTCCACTGCGACTTCGC-CTGCCTCCTCTACGACCTCCTCCGCGGCAA- 1929646
Query 60162 TGCCCTTCCAAGGA--TATTCACAAGATTGT-TCAGTGGGCTTGTGAAGTGGAGAGCGAG 60218
|| | | | | | | || |||| || | | | | || || | ||||| |||
Sbjct 1929645 -GCTCGACGAGGCACGCGTCCAGGAGATCGTCGCCGACGCCGTG-GACATCGAGAGGGAG 1929588
Query 60219 TTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGAAATGACGCAG 60278
||| || || ||||| || | ||| | || ||| ||| | |||| |||
Sbjct 1929587 TTCGTCTGCGACGCGCTCCCCGTCGCGCTCGTCGGGATGAACGGCGAGCTCATGAGCCAG 1929528
Query 60279 TACATTCAGTTTGTCGCGGACCG---CCTCATGGCCCAGTTTGGAGAAGGACCAATTTAC 60335
||||| |||| ||||| ||||| |||||||| | | || | | || || |||
Sbjct 1929527 TACATCGAGTTCGTCGCCGACCGGCTGCTCATGGCGC--TCGGGTGCAAGA-AGATGTAC 1929471
Query 60336 GGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTC 60395
||| ||||| ||||||||||||||| |||||| || | || ||||||||||||
Sbjct 1929470 AACGTCGCCAACCCGTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACCAACTTC 1929411
Query 60396 TTTGAGAAGCGGGTCGGGGATTA 60418
|| |||||||| ||||| || ||
Sbjct 1929410 TTCGAGAAGCGCGTCGGCGACTA 1929388
Score = 183 bits (202), Expect = 3e-41
Identities = 447/662 (68%), Gaps = 24/662 (4%)
Strand=Plus/Plus
Query 59769 GATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTAT 59827
|| || ||| | ||||||| || | ||||||| || ||| ||| || |||| ||
Sbjct 11442486 GACGTGCAGGTCGCCGAGGGGCGCGCCTTCTACGGGTTCCAGATCGC-CATCGAGAACAT 11442544
Query 59828 CCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGC 59887
||||||||||| ||||||||| || |||| | | || || | |||||||
Sbjct 11442545 CCACTCCGAGATGTACTCGCTGCTGCTCGAGACCTACATCCGCGACGGCGCCGAGAAGGA 11442604
Query 59888 TGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCAT 59947
| |||||||| ||||| || || ||| || || | || || || ||||||||
Sbjct 11442605 CAGGCTGTTCCGCGCCATCGACACCGTCCCGGCCGTGCGCCGCAAGGCCGACTGGGCCAT 11442664
Query 59948 GCAGTGGAT-GAGTCCTG-GAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTG 60005
|| ||||| || | | |||| || || | || ||| | || || || |||||
Sbjct 11442665 GCGCTGGATCGACGGCGGCGAGCGC--TTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTC 11442722
Query 60006 GAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTC 60065
|| || ||||||||||| ||||| ||||| || || ||||||||||| ||||| || |||
Sbjct 11442723 GAGGGGATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGGGGGCTC 11442782
Query 60066 ATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAG 60125
||||||||||| | |||||||||||||| || ||||| ||||||||||| || ||
Sbjct 11442783 ATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGAC 11442842
Query 60126 TTTGCAGTGAC-GCTCTATTCACACCTATTGGAAAAATGCCCTTCCA--AGGATATTCAC 60182
|| || || | ||||| | ||| | || || | | | | | | |
Sbjct 11442843 TTCGC-CTGCCTCCTCTACGACCTCCTCCGCGGCAA--GCTCGACGAGGCGCGCGTCCGC 11442899
Query 60183 AAGATTGT-TCAGTGGGCTTGTGAAGTGGAGAGCGAGTTCATCACAGAAGCGCTTCCATG 60241
|||| || | | | | | || | ||||| |||||| || || ||||| ||
Sbjct 11442900 GAGATCGTCGCCGACGCCGT-CGACATCGAGAGGGAGTTCGTCTGCGACGCGCTCCCCGT 11442958
Query 60242 CAAACTCATAGGTATGGACGCTGGAGAAATGACGCAGTACATTCAGTTTGTCGCGGACCG 60301
| ||| | || ||| ||| | |||| |||||||| |||| ||||| |||||
Sbjct 11442959 CGCGCTCGTCGGCATGAACGGCGACCTCATGAGCCAGTACATCGAGTTCGTCGCCGACCG 11443018
Query 60302 ---CCTCATG--GCCCAGTTTGGAGAAGGACCAATTTACGGCGTGAATAACCCTTTCGAC 60356
||||||| || | | | ||||| || ||| ||| ||||| ||||||
Sbjct 11443019 CCTCCTCATGGCGCTCGGCTGCAAGAAG-----ATGTACAACGTCGCCAACCCCTTCGAC 11443073
Query 60357 TGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGAT 60416
||||||||| |||||| || | || |||||||||||||| |||||||| ||||| ||
Sbjct 11443074 TGGATGGAGCTCATCTCCCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAC 11443133
Query 60417 TA 60418
||
Sbjct 11443134 TA 11443135
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548458373646720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |