Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21] 9,688 sequences; 362,063,720 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq6 208 8e-49 >seq6 Length=30401905 Score = 208 bits (230), Expect = 8e-49 Identities = 575/863 (67%), Gaps = 29/863 (3%) Strand=Plus/Minus Query 59572 GGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGG 59631 |||||||| | | |||| | || ||||| ||| | | || |||||| | | |||| Sbjct 1930237 GGTACCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCGTTCTGGACGGCGGAGG 1930178 Query 59632 AGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAA---GCTCAATTACGACGAGCAGC 59688 || | |||||| ||| ||| | | |||||| ||| |||||||| | Sbjct 1930177 AGGTGGACCTCTCCGCCGACGCGCGCCACTGGGACGCCGCGCTGTCGCCCGACGAGCGCC 1930118 Query 59689 ATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATA 59748 | ||| || || || |||||||||||||| ||||| || ||| | || || Sbjct 1930117 ACTTCGTCTCCCACGTGCTCGCCTTCTTCGCGGCCTCCGATGGCATCGTGCTCGAGAACC 1930058 Query 59749 TAGAC---ATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGT 59805 | | | | | | | ||| || || ||| | |||||||| || | ||||||| || Sbjct 1930057 TCGCCTCCAGGTTCATGTCC---GACGTGCAGGTCGCCGAGGCGCGCGCCTTCTACGGGT 1930001 Query 59806 ATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTG 59864 ||| ||| || |||| |||||||| |||| ||||||||| || |||| | || Sbjct 1930000 TCCAGATCGC-CATCGAGAACATCCACTCGGAGATGTACTCGCTGCTGCTCGAGACGTAC 1929942 Query 59865 GTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTT 59924 || || | ||||||| | || ||||| ||||| || || |||||| || Sbjct 1929941 ATCCGCGACGACGTCGAGAAGGACCGCCTCTTCCGCGCCATCGACACCGTCCCCGCCGTG 1929882 Query 59925 AAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTG-GAGCATCATTTGCACAAC 59982 | || || || |||||||||| ||||| || | | |||| || || | | Sbjct 1929881 CGCCGCAAGGCCGACTGGGCCATGCGATGGATCGACGGCGGCGAGCGC--TTCGCCGAGC 1929824 Query 59983 GTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTT 60042 | ||| | || || || ||||| || || ||||||||||| ||||| ||||| || || | Sbjct 1929823 GGCTCGTCGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGCTCCTTCTGCGCCATCT 1929764 Query 60043 TCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCC 60102 |||||||||| ||||| || |||||||||||||| | |||||||||||||| || |||| Sbjct 1929763 TCTGGCTCAAGAAGCGCGGACTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCC 1929704 Query 60103 GGGACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTCACACCTATTGGAAAAA 60161 | |||||||||||||| || || || || | ||||| | ||| | || Sbjct 1929703 GCGACGAGGGCCTCCACTGCGACTTCGC-CTGCCTCCTCTACGACCTCCTCCGCGGCAA- 1929646 Query 60162 TGCCCTTCCAAGGA--TATTCACAAGATTGT-TCAGTGGGCTTGTGAAGTGGAGAGCGAG 60218 || | | | | | | || |||| || | | | | || || | ||||| ||| Sbjct 1929645 -GCTCGACGAGGCACGCGTCCAGGAGATCGTCGCCGACGCCGTG-GACATCGAGAGGGAG 1929588 Query 60219 TTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGAAATGACGCAG 60278 ||| || || ||||| || | ||| | || ||| ||| | |||| ||| Sbjct 1929587 TTCGTCTGCGACGCGCTCCCCGTCGCGCTCGTCGGGATGAACGGCGAGCTCATGAGCCAG 1929528 Query 60279 TACATTCAGTTTGTCGCGGACCG---CCTCATGGCCCAGTTTGGAGAAGGACCAATTTAC 60335 ||||| |||| ||||| ||||| |||||||| | | || | | || || ||| Sbjct 1929527 TACATCGAGTTCGTCGCCGACCGGCTGCTCATGGCGC--TCGGGTGCAAGA-AGATGTAC 1929471 Query 60336 GGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTC 60395 ||| ||||| ||||||||||||||| |||||| || | || |||||||||||| Sbjct 1929470 AACGTCGCCAACCCGTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACCAACTTC 1929411 Query 60396 TTTGAGAAGCGGGTCGGGGATTA 60418 || |||||||| ||||| || || Sbjct 1929410 TTCGAGAAGCGCGTCGGCGACTA 1929388 Score = 183 bits (202), Expect = 3e-41 Identities = 447/662 (68%), Gaps = 24/662 (4%) Strand=Plus/Plus Query 59769 GATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTAT 59827 || || ||| | ||||||| || | ||||||| || ||| ||| || |||| || Sbjct 11442486 GACGTGCAGGTCGCCGAGGGGCGCGCCTTCTACGGGTTCCAGATCGC-CATCGAGAACAT 11442544 Query 59828 CCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGC 59887 ||||||||||| ||||||||| || |||| | | || || | ||||||| Sbjct 11442545 CCACTCCGAGATGTACTCGCTGCTGCTCGAGACCTACATCCGCGACGGCGCCGAGAAGGA 11442604 Query 59888 TGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCAT 59947 | |||||||| ||||| || || ||| || || | || || || |||||||| Sbjct 11442605 CAGGCTGTTCCGCGCCATCGACACCGTCCCGGCCGTGCGCCGCAAGGCCGACTGGGCCAT 11442664 Query 59948 GCAGTGGAT-GAGTCCTG-GAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTG 60005 || ||||| || | | |||| || || | || ||| | || || || ||||| Sbjct 11442665 GCGCTGGATCGACGGCGGCGAGCGC--TTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTC 11442722 Query 60006 GAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTC 60065 || || ||||||||||| ||||| ||||| || || ||||||||||| ||||| || ||| Sbjct 11442723 GAGGGGATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGGGGGCTC 11442782 Query 60066 ATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAG 60125 ||||||||||| | |||||||||||||| || ||||| ||||||||||| || || Sbjct 11442783 ATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGAC 11442842 Query 60126 TTTGCAGTGAC-GCTCTATTCACACCTATTGGAAAAATGCCCTTCCA--AGGATATTCAC 60182 || || || | ||||| | ||| | || || | | | | | | | Sbjct 11442843 TTCGC-CTGCCTCCTCTACGACCTCCTCCGCGGCAA--GCTCGACGAGGCGCGCGTCCGC 11442899 Query 60183 AAGATTGT-TCAGTGGGCTTGTGAAGTGGAGAGCGAGTTCATCACAGAAGCGCTTCCATG 60241 |||| || | | | | | || | ||||| |||||| || || ||||| || Sbjct 11442900 GAGATCGTCGCCGACGCCGT-CGACATCGAGAGGGAGTTCGTCTGCGACGCGCTCCCCGT 11442958 Query 60242 CAAACTCATAGGTATGGACGCTGGAGAAATGACGCAGTACATTCAGTTTGTCGCGGACCG 60301 | ||| | || ||| ||| | |||| |||||||| |||| ||||| ||||| Sbjct 11442959 CGCGCTCGTCGGCATGAACGGCGACCTCATGAGCCAGTACATCGAGTTCGTCGCCGACCG 11443018 Query 60302 ---CCTCATG--GCCCAGTTTGGAGAAGGACCAATTTACGGCGTGAATAACCCTTTCGAC 60356 ||||||| || | | | ||||| || ||| ||| ||||| |||||| Sbjct 11443019 CCTCCTCATGGCGCTCGGCTGCAAGAAG-----ATGTACAACGTCGCCAACCCCTTCGAC 11443073 Query 60357 TGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGAT 60416 ||||||||| |||||| || | || |||||||||||||| |||||||| ||||| || Sbjct 11443074 TGGATGGAGCTCATCTCCCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAC 11443133 Query 60417 TA 60418 || Sbjct 11443134 TA 11443135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548458373646720