Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21] 9,688 sequences; 362,063,720 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq6 140 4e-28 seq1 93.3 5e-14 seq12 91.5 2e-13 seq5 91.5 2e-13 seq1182 89.7 6e-13 seq10 89.7 6e-13 seq4 89.7 6e-13 seq3 89.7 6e-13 seq2 89.7 6e-13 >seq6 Length=30401905 Score = 140 bits (154), Expect = 4e-28 Identities = 277/403 (69%), Gaps = 8/403 (2%) Strand=Plus/Plus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 ||||| ||||| ||||| |||||||| | ||| |||||||| |||||||| || |||| Sbjct 1929730 AGGCCCGGCATGAGTCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAG 1929789 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCG--GAAG 74922 ||||| || ||||| || || |||||||| || || | ||||| | || ||| | | Sbjct 1929790 AAGATCCCCTCGACGCAGGCGAAGGCGACGAGCCGCTCGGCGAA--GCGC-TCGCCGCCG 1929846 Query 74923 TC-ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCT 74981 || ||||| | ||||| || || || || || || ||||| || ||||| || Sbjct 1929847 TCGATCCATCGCATGGCCCAGTCGGCCTTGCGGCGCACGGCGGGGACGGTGTCGATGGCG 1929906 Query 74982 TGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTAC 75041 ||||||||| ||||||| || || || | | | || | || || |||||| Sbjct 1929907 CGGAAGAGGCGGTCCTTCTCGACGTCGTCGCGGATGTACGTCTCGAGCAGCAGCGAGTAC 1929966 Query 75042 GTCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGC 75100 ||||||| || || |||| || ||| |||| || ||||||| | |||||||| || Sbjct 1929967 ATCTCCGAGTGGATGTTCTCGATGG-CGATCTGGAACCCGTAGAAGGCGCGCGCCTCGGC 1930025 Query 75101 AATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGC 75160 | ||| || || || | | ||| ||||| | |||||||| || ||||| Sbjct 1930026 GACCTGCACGTCGGACATGAACCTGGAGGCGAGGTTCTCGAGCACGATGCCATCGGAGGC 1930085 Query 75161 GGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCG 75203 ||||| || || || || || ||||||||||| ||| Sbjct 1930086 CGCGAAGAAGGCGAGCACGTGGGAGACGAAGTGGCGCTCGTCG 1930128 >seq1 Length=43445878 Score = 93.3 bits (102), Expect = 5e-14 Identities = 67/76 (88%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 1552360 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1552301 Query 79684 TGAGCTACGAAAGCAA 79699 |||||||||||||||| Sbjct 1552300 TGAGCTACGAAAGCAA 1552285 Score = 91.5 bits (100), Expect = 2e-13 Identities = 67/77 (87%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 39566051 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 39566110 Query 79684 TGAGCTACGAAAGCAAA 79700 |||||||||||||| || Sbjct 39566111 TGAGCTACGAAAGCTAA 39566127 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 33021032 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 33020973 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 33020972 TGAGCTACGAAAGC 33020959 >seq12 Length=18681871 Score = 91.5 bits (100), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 18566719 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 18566660 Query 79684 TGAGCTACGAAAGCA 79698 ||||||||||||||| Sbjct 18566659 TGAGCTACGAAAGCA 18566645 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 2239196 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 2239137 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 2239136 TGAGCTACGAAAGC 2239123 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | | |||| ||||||||||||||||||||||||||| ||||| Sbjct 3297321 TGCTTTCGTTGAGAGTCCAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 3297380 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 3297381 TGAGCTACGAAAGC 3297394 >seq5 Length=25164199 Score = 91.5 bits (100), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 15783177 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 15783236 Query 79684 TGAGCTACGAAAGCA 79698 ||||||||||||||| Sbjct 15783237 TGAGCTACGAAAGCA 15783251 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 2924100 TGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 2924041 Query 79684 TGAGCTACGAAAGCAAA 79700 |||||||||| ||| || Sbjct 2924040 TGAGCTACGAGAGCTAA 2924024 >seq1182 Length=554 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 170 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 229 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 230 TGAGCTACGAAAGC 243 >seq10 Length=17164355 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 792642 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 792701 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 792702 TGAGCTACGAAAGC 792715 >seq4 Length=32292456 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 2980443 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 2980502 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 2980503 TGAGCTACGAAAGC 2980516 >seq3 Length=46202548 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 35098500 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 35098559 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 35098560 TGAGCTACGAAAGC 35098573 >seq2 Length=36083738 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 14494393 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 14494334 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 14494333 TGAGCTACGAAAGC 14494320 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/75 (85%), Gaps = 2/75 (3%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCTA--CCAA 79682 |||||||| |||| | || |||| |||||||||||||||||||||||||||| | || Sbjct 14494685 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAA 14494626 Query 79683 TTGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 14494625 CTGAGCTACGAAAGC 14494611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547149732142400