Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21]
9,688 sequences; 362,063,720 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq6 140 4e-28
seq1 93.3 5e-14
seq12 91.5 2e-13
seq5 91.5 2e-13
seq1182 89.7 6e-13
seq10 89.7 6e-13
seq4 89.7 6e-13
seq3 89.7 6e-13
seq2 89.7 6e-13
>seq6
Length=30401905
Score = 140 bits (154), Expect = 4e-28
Identities = 277/403 (69%), Gaps = 8/403 (2%)
Strand=Plus/Plus
Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864
||||| ||||| ||||| |||||||| | ||| |||||||| |||||||| || ||||
Sbjct 1929730 AGGCCCGGCATGAGTCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAG 1929789
Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCG--GAAG 74922
||||| || ||||| || || |||||||| || || | ||||| | || ||| | |
Sbjct 1929790 AAGATCCCCTCGACGCAGGCGAAGGCGACGAGCCGCTCGGCGAA--GCGC-TCGCCGCCG 1929846
Query 74923 TC-ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCT 74981
|| ||||| | ||||| || || || || || || ||||| || ||||| ||
Sbjct 1929847 TCGATCCATCGCATGGCCCAGTCGGCCTTGCGGCGCACGGCGGGGACGGTGTCGATGGCG 1929906
Query 74982 TGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTAC 75041
||||||||| ||||||| || || || | | | || | || || ||||||
Sbjct 1929907 CGGAAGAGGCGGTCCTTCTCGACGTCGTCGCGGATGTACGTCTCGAGCAGCAGCGAGTAC 1929966
Query 75042 GTCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGC 75100
||||||| || || |||| || ||| |||| || ||||||| | |||||||| ||
Sbjct 1929967 ATCTCCGAGTGGATGTTCTCGATGG-CGATCTGGAACCCGTAGAAGGCGCGCGCCTCGGC 1930025
Query 75101 AATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGC 75160
| ||| || || || | | ||| ||||| | |||||||| || |||||
Sbjct 1930026 GACCTGCACGTCGGACATGAACCTGGAGGCGAGGTTCTCGAGCACGATGCCATCGGAGGC 1930085
Query 75161 GGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCG 75203
||||| || || || || || ||||||||||| |||
Sbjct 1930086 CGCGAAGAAGGCGAGCACGTGGGAGACGAAGTGGCGCTCGTCG 1930128
>seq1
Length=43445878
Score = 93.3 bits (102), Expect = 5e-14
Identities = 67/76 (88%), Gaps = 1/76 (1%)
Strand=Plus/Minus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
|||||||| |||| | || |||| ||||||||||||||||||||||||||| |||||
Sbjct 1552360 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1552301
Query 79684 TGAGCTACGAAAGCAA 79699
||||||||||||||||
Sbjct 1552300 TGAGCTACGAAAGCAA 1552285
Score = 91.5 bits (100), Expect = 2e-13
Identities = 67/77 (87%), Gaps = 1/77 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
|||||||| |||| | || |||| ||||||||||||||||||||||||||| |||||
Sbjct 39566051 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 39566110
Query 79684 TGAGCTACGAAAGCAAA 79700
|||||||||||||| ||
Sbjct 39566111 TGAGCTACGAAAGCTAA 39566127
Score = 89.7 bits (98), Expect = 6e-13
Identities = 65/74 (88%), Gaps = 1/74 (1%)
Strand=Plus/Minus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
|||||||| |||| | || |||| ||||||||||||||||||||||||||| |||||
Sbjct 33021032 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 33020973
Query 79684 TGAGCTACGAAAGC 79697
||||||||||||||
Sbjct 33020972 TGAGCTACGAAAGC 33020959
>seq12
Length=18681871
Score = 91.5 bits (100), Expect = 2e-13
Identities = 66/75 (88%), Gaps = 1/75 (1%)
Strand=Plus/Minus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
|||||||| |||| | || |||| ||||||||||||||||||||||||||| |||||
Sbjct 18566719 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 18566660
Query 79684 TGAGCTACGAAAGCA 79698
|||||||||||||||
Sbjct 18566659 TGAGCTACGAAAGCA 18566645
Score = 89.7 bits (98), Expect = 6e-13
Identities = 65/74 (88%), Gaps = 1/74 (1%)
Strand=Plus/Minus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
|||||||| |||| | || |||| ||||||||||||||||||||||||||| |||||
Sbjct 2239196 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 2239137
Query 79684 TGAGCTACGAAAGC 79697
||||||||||||||
Sbjct 2239136 TGAGCTACGAAAGC 2239123
Score = 86.0 bits (94), Expect = 7e-12
Identities = 64/74 (86%), Gaps = 1/74 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
|||||||| |||| | | |||| ||||||||||||||||||||||||||| |||||
Sbjct 3297321 TGCTTTCGTTGAGAGTCCAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 3297380
Query 79684 TGAGCTACGAAAGC 79697
||||||||||||||
Sbjct 3297381 TGAGCTACGAAAGC 3297394
>seq5
Length=25164199
Score = 91.5 bits (100), Expect = 2e-13
Identities = 66/75 (88%), Gaps = 1/75 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
|||||||| |||| | || |||| ||||||||||||||||||||||||||| |||||
Sbjct 15783177 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 15783236
Query 79684 TGAGCTACGAAAGCA 79698
|||||||||||||||
Sbjct 15783237 TGAGCTACGAAAGCA 15783251
Score = 82.4 bits (90), Expect = 8e-11
Identities = 65/77 (84%), Gaps = 1/77 (1%)
Strand=Plus/Minus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
|||| ||| |||| | || |||| ||||||||||||||||||||||||||| |||||
Sbjct 2924100 TGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 2924041
Query 79684 TGAGCTACGAAAGCAAA 79700
|||||||||| ||| ||
Sbjct 2924040 TGAGCTACGAGAGCTAA 2924024
>seq1182
Length=554
Score = 89.7 bits (98), Expect = 6e-13
Identities = 65/74 (88%), Gaps = 1/74 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
|||||||| |||| | || |||| ||||||||||||||||||||||||||| |||||
Sbjct 170 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 229
Query 79684 TGAGCTACGAAAGC 79697
||||||||||||||
Sbjct 230 TGAGCTACGAAAGC 243
>seq10
Length=17164355
Score = 89.7 bits (98), Expect = 6e-13
Identities = 65/74 (88%), Gaps = 1/74 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
|||||||| |||| | || |||| ||||||||||||||||||||||||||| |||||
Sbjct 792642 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 792701
Query 79684 TGAGCTACGAAAGC 79697
||||||||||||||
Sbjct 792702 TGAGCTACGAAAGC 792715
>seq4
Length=32292456
Score = 89.7 bits (98), Expect = 6e-13
Identities = 65/74 (88%), Gaps = 1/74 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
|||||||| |||| | || |||| ||||||||||||||||||||||||||| |||||
Sbjct 2980443 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 2980502
Query 79684 TGAGCTACGAAAGC 79697
||||||||||||||
Sbjct 2980503 TGAGCTACGAAAGC 2980516
>seq3
Length=46202548
Score = 89.7 bits (98), Expect = 6e-13
Identities = 65/74 (88%), Gaps = 1/74 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
|||||||| |||| | || |||| ||||||||||||||||||||||||||| |||||
Sbjct 35098500 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 35098559
Query 79684 TGAGCTACGAAAGC 79697
||||||||||||||
Sbjct 35098560 TGAGCTACGAAAGC 35098573
>seq2
Length=36083738
Score = 89.7 bits (98), Expect = 6e-13
Identities = 65/74 (88%), Gaps = 1/74 (1%)
Strand=Plus/Minus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
|||||||| |||| | || |||| ||||||||||||||||||||||||||| |||||
Sbjct 14494393 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 14494334
Query 79684 TGAGCTACGAAAGC 79697
||||||||||||||
Sbjct 14494333 TGAGCTACGAAAGC 14494320
Score = 84.2 bits (92), Expect = 2e-11
Identities = 64/75 (85%), Gaps = 2/75 (3%)
Strand=Plus/Minus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCTA--CCAA 79682
|||||||| |||| | || |||| |||||||||||||||||||||||||||| | ||
Sbjct 14494685 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAA 14494626
Query 79683 TTGAGCTACGAAAGC 79697
||||||||||||||
Sbjct 14494625 CTGAGCTACGAAAGC 14494611
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547149732142400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |