Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21] 9,688 sequences; 362,063,720 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq2 123 2e-23 seq8 122 8e-23 seq5 107 2e-18 seq6 102 7e-17 seq1 98.7 9e-16 seq9 86.0 5e-12 >seq2 Length=36083738 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || ||||||||||||||| | || || ||||| ||||| | || Sbjct 2262974 CATGCAGATCTTCGTCAAGACTCTGACCGGCAAGACCATCACCCTTGAGGTGGAGTCTTC 2262915 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | ||||| || || || ||||| || ||||| || || || || Sbjct 2262914 TGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCA 2262855 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | || ||||| || |||| || | |||| || |||| ||||| Sbjct 2262854 GCAGCGCCTCATCTTTGCTGGCAAGCAGCTGGAGGATGGCAGGACCCTTGCCGACTACAA 2262795 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||| ||| | ||| | ||| |||| | ||||||| || Sbjct 2262794 CATCCAGAAGGAGTCCACCCTTCATCTTGTTCTGCGCCTAAGGGGTGGAAT 2262744 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||||||||| |||| || || || ||||| | || Sbjct 2263201 ATGCAGATCTTTGTGAAGACATTGACCGGCAAGACTATCACCCTCGAGGTGGAGTCCTCT 2263142 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || || || ||||| || ||||| || || || || Sbjct 2263141 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 2263082 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || ||||| || |||| || | |||| || | || |||||| Sbjct 2263081 CAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAGGATGGCAGGACCCTTGCTGACTACAAC 2263022 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| ||| | || | || | || | || |||||||| Sbjct 2263021 ATCCAGAAGGAGTCCACCCTCCACCTTGTCCTCCGCCTCCGTGGTGGCAT 2262972 >seq8 Length=23026653 Score = 122 bits (134), Expect = 8e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || |||||||||||||| || || ||||| ||||| | || Sbjct 4140040 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGTCCATCACCCTTGAGGTGGAGTCCTCG 4139981 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || ||||| || || || || || || || Sbjct 4139980 GACACCATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGGATCCCTCCTGACCAG 4139921 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCG-ACCGTTTCCGATTACAA 27166 ||||| | || | ||||||||| || | || || || ||| ||| || | || ||||| Sbjct 4139920 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGA-AGGTCGCACCCTTGCTGACTACAA 4139862 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 |||||| |||||||| ||| | ||| | || | ||| | || |||||| Sbjct 4139861 CATTCAGAAGGAGTCCACCCTCCATCTTGTCCTCCGTCTCCGTGGTGGC 4139813 Score = 116 bits (128), Expect = 3e-21 Identities = 166/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||||||||||||||||| || || ||||| ||||| | || Sbjct 4124778 ATGCAGATCTTTGTGAAGACTCTGACCGGCAAGTCCATCACCCTTGAGGTGGAGTCATCA 4124719 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA- 27106 ||| | || || | || || ||| || || ||||| || ||||| | || || || Sbjct 4124718 GACACCATCGACAATGTGAAGGCAAAGATCCAGGACAAGGAGGGCATTTCCCCAGACCAG 4124659 Query 27107 -ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCG-ACCGTTTCCGATTAC 27164 | |||| | || | ||||||||| || | || || || || ||| || | || ||| Sbjct 4124658 CAGAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGA-AGGACGCACCCTTGCTGACTAC 4124600 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||||| |||||||| ||| | ||| | || | ||| | || ||||| Sbjct 4124599 AACATTCAGAAGGAGTCCACCCTCCATCTTGTGCTCCGTCTCCGTGGTGG 4124550 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || ||||||||||| || || ||||| ||||| | || Sbjct 4139177 ATGCAGATCTTTGTGAAGACCCTAACCGGCAAGTCCATCACCCTTGAGGTGGAGTCCTCG 4139118 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || |||||||| || || || || || || || Sbjct 4139117 GACACCATCGACAACGTGAAGGCGAAGATCCAAGACAAGGAGGGGATCCCTCCTGACCAG 4139058 Query 27108 CAGCGTTTAATATACGCCGGCAAACA 27133 ||||| | || | ||||||||| || Sbjct 4139057 CAGCGCCTCATCTTCGCCGGCAAGCA 4139032 >seq5 Length=25164199 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||||| || |||||| | |||||||| || || || ||| Sbjct 21087679 ATGCAGATCTTTGTCAAGACTCTCACTGGCAAGACCATTACTCTGGAGGTTGAGAGCTCC 21087620 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || || || ||||| || || || || || Sbjct 21087619 GACACCATCGACAATGTGAAGGCTAAGATCCAGGATAAGGAAGGTATTCCCCCAGACCAG 21087560 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||||||||| || ||||||| | ||| | |||| |||||| Sbjct 21087559 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCGCCGACTACAAC 21087500 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| |||||||| ||| | || |||| | || | ||||||| Sbjct 21087499 ATTCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGCCTTAGGGGTGG 21087453 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || |||||| ||||||| ||||| || || || Sbjct 21087907 ATGCAGATTTTTGTCAAGACACTCACTGGCAAGACTATTACCCTTGAGGTTGAGAGCTCG 21087848 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || || || || || || ||||| || || || || Sbjct 21087847 GACACCATTGATAACGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCCCCAGACCAG 21087788 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || |||| || | ||| || | || |||||| Sbjct 21087787 CAGAGACTCATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTTGCTGACTACAAC 21087728 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||||| ||| |||| ||||| | || | ||||||| || Sbjct 21087727 ATTCAGAAGGAGTCTACCCTACACTTGGTGCTCCGCCTCAGGGGTGGTAT 21087678 >seq6 Length=30401905 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || |||||||||||| | ||||| ||||| || || | || Sbjct 26902856 CATGCAGATTTTTGTCAAGACCCTGACCGGCAAGACCATTACGCTTGAGGTTGAGTCTTC 26902915 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || |||| || | || || || || || ||||| || || || || || || || Sbjct 26902916 TGATACGATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGGATTCCCCCGGACCA 26902975 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | || ||||| || | || || | ||| | | |||||||| Sbjct 26902976 GCAGCGCCTCATCTTTGCAGGCAAGCAGCTCGAGGATGGACGCACCCTGGCTGATTACAA 26903035 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 |||||| |||||||| ||||| || |||| | || | || |||||| Sbjct 26903036 CATTCAGAAGGAGTCCACCTTGCACCTGGTGCTCCGCCTCCGTGGTGGC 26903084 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || |||| || ||| | || ||||| || || || |||| Sbjct 26902628 CATGCAGATCTTTGTGAAGACCTTGACAGGAAAGACCATCACTCTCGAGGTCGAGTCGTC 26902687 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| |||| || | || || || || || ||||| || || || || || || || Sbjct 26902688 GGACACGATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGGATCCCTCCTGACCA 26902747 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | |||||||| || | || ||| || |||| | | |||||||| Sbjct 26902748 GCAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAGGACGGTCGGACCCTGGCTGATTACAA 26902807 Query 27167 CATTCAAAAGGAGTCGAC 27184 |||||| || ||||| || Sbjct 26902808 CATTCAGAAAGAGTCCAC 26902825 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || |||||| | || || || || || || | || Sbjct 26902401 ATGCAGATCTTTGTGAAGACACTCACTGGCAAGACCATCACCCTCGAGGTTGAGTCCTCT 26902460 Query 27048 GACTCGATTGA-GATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | ||||| |||| | || || ||||||||||| || ||||| ||||| || || Sbjct 26902461 GATACAATTGACGATG-TGAAGGCCAAGATTCAAGACAAGGAGGGCATTCCACCTGACCA 26902519 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 || ||| | || | || ||||| ||| | || || | ||| | | |||||||| Sbjct 26902520 GCAACGTCTCATCTTTGCTGGCAAGCAACTAGAGGATGGCCGCACCCTCGCGGATTACAA 26902579 Query 27167 CATTCAAAAGGAGTCGACC 27185 ||| || |||||||| ||| Sbjct 26902580 CATCCAGAAGGAGTCCACC 26902598 >seq1 Length=43445878 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| || ||| | || || || || ||||| | || Sbjct 9972027 ATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACGATCACGCTGGAGGTGGAGTCCTCG 9972086 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || ||||| || || || || ||||| || Sbjct 9972087 GACACCATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGGATCCCGCCCGACCAG 9972146 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||||||||| || |||| ||| | ||| | |||| |||||| Sbjct 9972147 CAGCGGCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGGCGCACCCTCGCCGACTACAAC 9972206 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 || || |||||||||||| | || |||| Sbjct 9972207 ATCCAGAAGGAGTCGACCCTCCACCTGGT 9972235 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| || ||| | || || || || ||||| | || Sbjct 9981235 ATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACGATCACGCTGGAGGTGGAGTCCTCG 9981294 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || ||||| || || || || ||||| || Sbjct 9981295 GACACCATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGGATCCCGCCCGACCAG 9981354 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||||||||| || |||| ||| | ||| | |||| |||||| Sbjct 9981355 CAGCGGCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGGCGCACCCTCGCCGACTACAAC 9981414 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 || || |||||||||||| | || |||| Sbjct 9981415 ATCCAGAAGGAGTCGACCCTCCACCTGGT 9981443 >seq9 Length=22605696 Score = 86.0 bits (94), Expect = 5e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 27078 CAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTG 27137 || ||||| ||||| || || || |||||||||||||| |||| ||||||||| || || Sbjct 12264338 CAGGACAAGGAAGGGATCCCTCCAGATCAACAGCGTTTGATATTCGCCGGCAAGCAGCTG 12264397 Query 27138 GAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGAC 27184 ||||| | || | |||| ||||||||||| |||||||| || Sbjct 12264398 GAAGATGGGCGCACACTGGCCGACTACAACATTCAGAAGGAGTCAAC 12264444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434865731381760