Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21]
9,688 sequences; 362,063,720 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq2 123 2e-23
seq8 122 8e-23
seq5 107 2e-18
seq6 102 7e-17
seq1 98.7 9e-16
seq9 86.0 5e-12
>seq2
Length=36083738
Score = 123 bits (136), Expect = 2e-23
Identities = 166/231 (72%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||| || || || ||||||||||||||| | || || ||||| ||||| | ||
Sbjct 2262974 CATGCAGATCTTCGTCAAGACTCTGACCGGCAAGACCATCACCCTTGAGGTGGAGTCTTC 2262915
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
||| | || || | ||||| || || || ||||| || ||||| || || || ||
Sbjct 2262914 TGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCA 2262855
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
||||| | || | || ||||| || |||| || | |||| || |||| |||||
Sbjct 2262854 GCAGCGCCTCATCTTTGCTGGCAAGCAGCTGGAGGATGGCAGGACCCTTGCCGACTACAA 2262795
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||| || |||||||| ||| | ||| | ||| |||| | ||||||| ||
Sbjct 2262794 CATCCAGAAGGAGTCCACCCTTCATCTTGTTCTGCGCCTAAGGGGTGGAAT 2262744
Score = 109 bits (120), Expect = 5e-19
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| || || ||||||||||| |||| || || || ||||| | ||
Sbjct 2263201 ATGCAGATCTTTGTGAAGACATTGACCGGCAAGACTATCACCCTCGAGGTGGAGTCCTCT 2263142
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | ||||| || || || ||||| || ||||| || || || ||
Sbjct 2263141 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 2263082
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||| | || | || ||||| || |||| || | |||| || | || ||||||
Sbjct 2263081 CAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAGGATGGCAGGACCCTTGCTGACTACAAC 2263022
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| || |||||||| ||| | || | || | || | || ||||||||
Sbjct 2263021 ATCCAGAAGGAGTCCACCCTCCACCTTGTCCTCCGCCTCCGTGGTGGCAT 2262972
>seq8
Length=23026653
Score = 122 bits (134), Expect = 8e-23
Identities = 166/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| || || |||||||||||||| || || ||||| ||||| | ||
Sbjct 4140040 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGTCCATCACCCTTGAGGTGGAGTCCTCG 4139981
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | || || || || || ||||| || || || || || || ||
Sbjct 4139980 GACACCATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGGATCCCTCCTGACCAG 4139921
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCG-ACCGTTTCCGATTACAA 27166
||||| | || | ||||||||| || | || || || ||| ||| || | || |||||
Sbjct 4139920 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGA-AGGTCGCACCCTTGCTGACTACAA 4139862
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215
|||||| |||||||| ||| | ||| | || | ||| | || ||||||
Sbjct 4139861 CATTCAGAAGGAGTCCACCCTCCATCTTGTCCTCCGTCTCCGTGGTGGC 4139813
Score = 116 bits (128), Expect = 3e-21
Identities = 166/230 (72%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| || ||||||||||||||||| || || ||||| ||||| | ||
Sbjct 4124778 ATGCAGATCTTTGTGAAGACTCTGACCGGCAAGTCCATCACCCTTGAGGTGGAGTCATCA 4124719
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA- 27106
||| | || || | || || ||| || || ||||| || ||||| | || || ||
Sbjct 4124718 GACACCATCGACAATGTGAAGGCAAAGATCCAGGACAAGGAGGGCATTTCCCCAGACCAG 4124659
Query 27107 -ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCG-ACCGTTTCCGATTAC 27164
| |||| | || | ||||||||| || | || || || || ||| || | || |||
Sbjct 4124658 CAGAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGA-AGGACGCACCCTTGCTGACTAC 4124600
Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
|||||||| |||||||| ||| | ||| | || | ||| | || |||||
Sbjct 4124599 AACATTCAGAAGGAGTCCACCCTCCATCTTGTGCTCCGTCTCCGTGGTGG 4124550
Score = 84.2 bits (92), Expect = 2e-11
Identities = 106/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| || || || ||||||||||| || || ||||| ||||| | ||
Sbjct 4139177 ATGCAGATCTTTGTGAAGACCCTAACCGGCAAGTCCATCACCCTTGAGGTGGAGTCCTCG 4139118
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | || || || || |||||||| || || || || || || ||
Sbjct 4139117 GACACCATCGACAACGTGAAGGCGAAGATCCAAGACAAGGAGGGGATCCCTCCTGACCAG 4139058
Query 27108 CAGCGTTTAATATACGCCGGCAAACA 27133
||||| | || | ||||||||| ||
Sbjct 4139057 CAGCGCCTCATCTTCGCCGGCAAGCA 4139032
>seq5
Length=25164199
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| || ||||| || |||||| | |||||||| || || || |||
Sbjct 21087679 ATGCAGATCTTTGTCAAGACTCTCACTGGCAAGACCATTACTCTGGAGGTTGAGAGCTCC 21087620
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | || || || || || || || ||||| || || || || ||
Sbjct 21087619 GACACCATCGACAATGTGAAGGCTAAGATCCAGGATAAGGAAGGTATTCCCCCAGACCAG 21087560
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||||| | || | ||||||||| || ||||||| | ||| | |||| ||||||
Sbjct 21087559 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCGCCGACTACAAC 21087500
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
||||| |||||||| ||| | || |||| | || | |||||||
Sbjct 21087499 ATTCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGCCTTAGGGGTGG 21087453
Score = 100 bits (110), Expect = 2e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| || || || || |||||| ||||||| ||||| || || ||
Sbjct 21087907 ATGCAGATTTTTGTCAAGACACTCACTGGCAAGACTATTACCCTTGAGGTTGAGAGCTCG 21087848
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | ||||| | || || || || || || || || ||||| || || || ||
Sbjct 21087847 GACACCATTGATAACGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCCCCAGACCAG 21087788
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||| | | || | || ||||| || |||| || | ||| || | || ||||||
Sbjct 21087787 CAGAGACTCATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTTGCTGACTACAAC 21087728
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||||| |||||||| ||| |||| ||||| | || | ||||||| ||
Sbjct 21087727 ATTCAGAAGGAGTCTACCCTACACTTGGTGCTCCGCCTCAGGGGTGGTAT 21087678
>seq6
Length=30401905
Score = 102 bits (112), Expect = 7e-17
Identities = 160/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||| ||||| || || |||||||||||| | ||||| ||||| || || | ||
Sbjct 26902856 CATGCAGATTTTTGTCAAGACCCTGACCGGCAAGACCATTACGCTTGAGGTTGAGTCTTC 26902915
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
|| |||| || | || || || || || ||||| || || || || || || ||
Sbjct 26902916 TGATACGATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGGATTCCCCCGGACCA 26902975
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
||||| | || | || ||||| || | || || | ||| | | ||||||||
Sbjct 26902976 GCAGCGCCTCATCTTTGCAGGCAAGCAGCTCGAGGATGGACGCACCCTGGCTGATTACAA 26903035
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215
|||||| |||||||| ||||| || |||| | || | || ||||||
Sbjct 26903036 CATTCAGAAGGAGTCCACCTTGCACCTGGTGCTCCGCCTCCGTGGTGGC 26903084
Score = 100 bits (110), Expect = 2e-16
Identities = 141/198 (71%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||| ||||| || || |||| || ||| | || ||||| || || || ||||
Sbjct 26902628 CATGCAGATCTTTGTGAAGACCTTGACAGGAAAGACCATCACTCTCGAGGTCGAGTCGTC 26902687
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
||| |||| || | || || || || || ||||| || || || || || || ||
Sbjct 26902688 GGACACGATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGGATCCCTCCTGACCA 26902747
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
|||||| | || | |||||||| || | || ||| || |||| | | ||||||||
Sbjct 26902748 GCAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAGGACGGTCGGACCCTGGCTGATTACAA 26902807
Query 27167 CATTCAAAAGGAGTCGAC 27184
|||||| || ||||| ||
Sbjct 26902808 CATTCAGAAAGAGTCCAC 26902825
Score = 91.5 bits (100), Expect = 1e-13
Identities = 141/199 (71%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| || || || || |||||| | || || || || || || | ||
Sbjct 26902401 ATGCAGATCTTTGTGAAGACACTCACTGGCAAGACCATCACCCTCGAGGTTGAGTCCTCT 26902460
Query 27048 GACTCGATTGA-GATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
|| | ||||| |||| | || || ||||||||||| || ||||| ||||| || ||
Sbjct 26902461 GATACAATTGACGATG-TGAAGGCCAAGATTCAAGACAAGGAGGGCATTCCACCTGACCA 26902519
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
|| ||| | || | || ||||| ||| | || || | ||| | | ||||||||
Sbjct 26902520 GCAACGTCTCATCTTTGCTGGCAAGCAACTAGAGGATGGCCGCACCCTCGCGGATTACAA 26902579
Query 27167 CATTCAAAAGGAGTCGACC 27185
||| || |||||||| |||
Sbjct 26902580 CATCCAGAAGGAGTCCACC 26902598
>seq1
Length=43445878
Score = 98.7 bits (108), Expect = 9e-16
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || || || ||||| || ||| | || || || || ||||| | ||
Sbjct 9972027 ATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACGATCACGCTGGAGGTGGAGTCCTCG 9972086
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | || || || || || ||||| || || || || ||||| ||
Sbjct 9972087 GACACCATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGGATCCCGCCCGACCAG 9972146
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||||| | || | ||||||||| || |||| ||| | ||| | |||| ||||||
Sbjct 9972147 CAGCGGCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGGCGCACCCTCGCCGACTACAAC 9972206
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196
|| || |||||||||||| | || ||||
Sbjct 9972207 ATCCAGAAGGAGTCGACCCTCCACCTGGT 9972235
Score = 98.7 bits (108), Expect = 9e-16
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || || || ||||| || ||| | || || || || ||||| | ||
Sbjct 9981235 ATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACGATCACGCTGGAGGTGGAGTCCTCG 9981294
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | || || || || || ||||| || || || || ||||| ||
Sbjct 9981295 GACACCATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGGATCCCGCCCGACCAG 9981354
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||||| | || | ||||||||| || |||| ||| | ||| | |||| ||||||
Sbjct 9981355 CAGCGGCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGGCGCACCCTCGCCGACTACAAC 9981414
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196
|| || |||||||||||| | || ||||
Sbjct 9981415 ATCCAGAAGGAGTCGACCCTCCACCTGGT 9981443
>seq9
Length=22605696
Score = 86.0 bits (94), Expect = 5e-12
Identities = 83/107 (78%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 27078 CAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTG 27137
|| ||||| ||||| || || || |||||||||||||| |||| ||||||||| || ||
Sbjct 12264338 CAGGACAAGGAAGGGATCCCTCCAGATCAACAGCGTTTGATATTCGCCGGCAAGCAGCTG 12264397
Query 27138 GAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGAC 27184
||||| | || | |||| ||||||||||| |||||||| ||
Sbjct 12264398 GAAGATGGGCGCACACTGGCCGACTACAACATTCAGAAGGAGTCAAC 12264444
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434865731381760
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