Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21] 9,688 sequences; 362,063,720 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq5 107 2e-18 seq6 105 6e-18 seq1 104 2e-17 seq2 93.3 4e-14 seq4 84.2 2e-11 >seq5 Length=25164199 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || || |||| ||| | || | ||| || ||| ||| || || || || || ||||| Sbjct 21087909 CCACCCCTTAGGCGCAGAACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCG 21087968 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || |||| |||| || ||||| ||||| ||||| ||||||||||||||||| | ||| Sbjct 21087969 AGGGTTCTGCCGTCCTCCAGCTGCTTGCCAGCAAAAATAAGACGCTGCTGGTCTGGGGGA 21088028 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCAC 39236 | || ||| |||||| ||| ||| |||| ||| | | | ||| || ||||| || Sbjct 21088029 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGA-CGTTGTCGATCGTGTCTGATGACTCGAC 21088087 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | ||| || | || || || || || || || ||||| ||||| Sbjct 21088088 CTCAAGCGTAATGGTCTTGCCAGTAAGGGTCTTCACGAAGATCTGCAT 21088135 Score = 93.3 bits (102), Expect = 4e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||| | || || ||| ||| || || || || || ||||| || || || | Sbjct 3097274 GCGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCC 3097333 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| || ||||| ||||| || || || || ||||||||||| | ||| | | || || Sbjct 3097334 GTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATCCCTTCCTT 3097393 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||| || || | ||| | | | || || |||||||| |||| ||||| Sbjct 3097394 GTCCTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGA 3097452 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 | | || |||||||| || || || ||||| |||||||| Sbjct 3097453 TGGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATCTT 3097492 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| || | ||| | || | || || ||| ||| || || || || || || ||| Sbjct 21088137 CCTCCCCTGAGGCGGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCA 21088196 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || | | || || ||||| ||||| ||||| || |||||||||||||| | ||| Sbjct 21088197 AGGGTCCTACCATCCTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGA 21088256 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCAC 39236 | | ||| |||||| ||| || || | | ||| | | | ||||| ||||| || Sbjct 21088257 ATCCCCTCCTTGTCCTGGATCTT-TGCCTTAACGTTGTCAATGGTATCAGAAGACTCAAC 21088315 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | |||||| | || || |||| || || |||||||||||||| Sbjct 21088316 CTCAAGGGTGATAGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 21088363 >seq6 Length=30401905 Score = 105 bits (116), Expect = 6e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAA-CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAAT 39112 || |||||| || | || ||| ||| | || || ||| |||||| || || || |||| Sbjct 26902859 CATGCCTCCCCTCA-GCCTAAGCACAAGGTGAAGAGTGGACTCTTTCTGAATGTTGTAAT 26902801 Query 39113 CGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGG 39172 | || || || || |||| |||||||| ||||| ||||| || |||||||||||||| | Sbjct 26902800 CAGCCAGGGTCCGACCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCAG 26902741 Query 39173 TGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACT 39232 || | | ||| |||||| ||| ||| || | | | | ||| || ||||| Sbjct 26902740 GAGGGATCCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATCGTGTCCGACGACT 26902681 Query 39233 CCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || | ||||| | ||||| |||| || || |||||||| ||||| Sbjct 26902680 CGACCTCGAGAGTGATGGTCTTTCCTGTCAAGGTCTTCACAAAGATCTGCAT 26902629 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || | ||| ||| || || || || ||||| || || || ||| | Sbjct 26903072 GCGGAGCACCAGGTGCAAGGTGGACTCCTTCTGAATGTTGTAATCAGCCAGGGTGCGTCC 26903013 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || || ||||| ||||| ||||| || || ||||||||||| | ||| | | ||| || Sbjct 26903012 ATCCTCGAGCTGCTTGCCTGCAAAGATGAGGCGCTGCTGGTCCGGGGGAATCCCCTCCTT 26902953 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||| ||| || | ||| | | | |||||| ||||| || || | ||| | Sbjct 26902952 GTCCTGGATCTTCGCCTTCA-CGTTGTCGATCGTATCAGAAGACTCAACCTCAAGCGTAA 26902894 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | | || || ||||| || || ||||| || ||||| Sbjct 26902893 TGGTCTTGCCGGTCAGGGTCTTGACAAAAATCTGCAT 26902857 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| || || || || || ||||| || || || | || |||||||| Sbjct 27218337 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCCTCAAGCTGC 27218278 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| || || || |||||||||||||| | ||| | || ||| |||||| ||| || Sbjct 27218277 TTGCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTG 27218218 Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTC 39261 |||| | | | || || ||||| || || | ||||| | || || || Sbjct 27218217 GCCTTGACATTGTCAATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGTG 27218158 Query 39262 AGCGTTTTAACAAAGATTTGCATCT 39286 || || || |||||||| ||||||| Sbjct 27218157 AGGGTCTTCACAAAGATCTGCATCT 27218133 >seq1 Length=43445878 Score = 104 bits (114), Expect = 2e-17 Identities = 164/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 39052 TTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAA 39111 |||| ||| || | | ||| | ||||| || ||||| ||| || || || || || Sbjct 21648070 TTCAGGCCGCCGCGGAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAG 21648129 Query 39112 TCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCG 39171 ||||| || || || |||| || ||||| ||||| || || || || ||||||||||| Sbjct 21648130 TCGGCCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCC 21648189 Query 39172 GTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGAC 39231 | || | | ||| |||||| | ||| |||| || | ||| ||||| | Sbjct 21648190 GGCGGGATCCCCTCCTTGTCCTGCACCTTCGCCTTGACGTTCTGGATCGTGTCGCTGCTC 21648249 Query 39232 TCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 ||||| |||| |||||| | || |||||||| || || || ||||| ||||||| Sbjct 21648250 TCCACCTCCAGCGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATCT 21648304 Score = 102 bits (112), Expect = 7e-17 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || || || ||| || || || || || ||||| || || || | Sbjct 9972242 GCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCC 9972183 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| || ||||| ||||| || || || || ||||||||||||| || | | ||| || Sbjct 9972182 GTCCTCCAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCGGGCGGGATCCCCTCCTT 9972123 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||| ||| || | ||| | | | || || |||||||| |||| ||||| Sbjct 9972122 GTCCTGGATCTTCGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGA 9972064 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 | | || |||||||| || || || ||||| |||||||| Sbjct 9972063 TCGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATCTT 9972024 Score = 102 bits (112), Expect = 7e-17 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || || || ||| || || || || || ||||| || || || | Sbjct 9981450 GCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCC 9981391 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| || ||||| ||||| || || || || ||||||||||||| || | | ||| || Sbjct 9981390 GTCCTCCAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCGGGCGGGATCCCCTCCTT 9981331 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||| ||| || | ||| | | | || || |||||||| |||| ||||| Sbjct 9981330 GTCCTGGATCTTCGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGA 9981272 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 | | || |||||||| || || || ||||| |||||||| Sbjct 9981271 TCGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATCTT 9981232 >seq2 Length=36083738 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || || |||| ||| | || | ||| || ||| ||| || || || || || |||||| Sbjct 2262747 CCACCCCTTAGGCGCAGAACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCA 2262806 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || | | || || ||||| ||||| ||||| || || ||||||||||| | ||| Sbjct 2262807 AGGGTCCTGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCTGGGGGA 2262866 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCAC 39236 | || ||| |||||| ||| || |||| ||| | | | || || |||||||| Sbjct 2262867 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCAGAAGACTCCAC 2262925 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | ||||| | || || ||||| || || || ||||| ||||| Sbjct 2262926 CTCAAGGGTGATGGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCAT 2262973 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| || || || || || || ||||| || | | || || ||||| Sbjct 2262999 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCATCCTCCAGCTGC 2263058 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| ||||| || |||||||||||||| | ||| | || ||| |||||| ||| || Sbjct 2263059 TTGCCAGCAAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTG 2263118 Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTC 39261 |||| | | | || || |||||||| || | |||||| | || || ||| Sbjct 2263119 GCCTTGACATTGTCGATGGTGTCAGAGGACTCCACCTCGAGGGTGATAGTCTTGCCGGTC 2263178 Query 39262 AGCGTTTTAACAAAGATTTGCATCT 39286 | || || |||||||| ||||||| Sbjct 2263179 AATGTCTTCACAAAGATCTGCATCT 2263203 >seq4 Length=32292456 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || |||||||| || || || || | || |||||||| ||||| || || Sbjct 28749496 CTCCTTCTGGATGTTATAATCCGCGAGAGTACGCCCATCCTCAAGCTGCTTGCCAGCGAA 28749437 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 ||||| ||||||||||| | || | || ||| || ||| || || || | | Sbjct 28749436 GATAAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTATCCTGAATCTTAGCCTTCACATT 28749377 Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | ||||||| ||||| || |||| ||||| | || || || || || ||||| Sbjct 28749376 GTCAATCGTATCGGAGGACTCAACCTCCAAGGTGATGGTCTTGCCAGTGAGGGTCTTAAC 28749317 Query 39273 AAAGATTTGCATCT 39286 || || ||||||| Sbjct 28749316 GAATATCTGCATCT 28749303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429494882477144