Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21]
9,688 sequences; 362,063,720 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq5 107 2e-18
seq6 105 6e-18
seq1 104 2e-17
seq2 93.3 4e-14
seq4 84.2 2e-11
>seq5
Length=25164199
Score = 107 bits (118), Expect = 2e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117
|| || |||| ||| | || | ||| || ||| ||| || || || || || |||||
Sbjct 21087909 CCACCCCTTAGGCGCAGAACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCG 21087968
Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177
|| |||| |||| || ||||| ||||| ||||| ||||||||||||||||| | |||
Sbjct 21087969 AGGGTTCTGCCGTCCTCCAGCTGCTTGCCAGCAAAAATAAGACGCTGCTGGTCTGGGGGA 21088028
Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCAC 39236
| || ||| |||||| ||| ||| |||| ||| | | | ||| || ||||| ||
Sbjct 21088029 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGA-CGTTGTCGATCGTGTCTGATGACTCGAC 21088087
Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|| | ||| || | || || || || || || || ||||| |||||
Sbjct 21088088 CTCAAGCGTAATGGTCTTGCCAGTAAGGGTCTTCACGAAGATCTGCAT 21088135
Score = 93.3 bits (102), Expect = 4e-14
Identities = 154/220 (70%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128
||| | ||| | || || ||| ||| || || || || || ||||| || || || |
Sbjct 3097274 GCGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCC 3097333
Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188
||| || ||||| ||||| || || || || ||||||||||| | ||| | | || ||
Sbjct 3097334 GTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATCCCTTCCTT 3097393
Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247
|||| ||| || || | ||| | | | || || |||||||| |||| |||||
Sbjct 3097394 GTCCTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGA 3097452
Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287
| | || |||||||| || || || ||||| ||||||||
Sbjct 3097453 TGGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATCTT 3097492
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117
||||| || | ||| | || | || || ||| ||| || || || || || || |||
Sbjct 21088137 CCTCCCCTGAGGCGGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCA 21088196
Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177
|| || | | || || ||||| ||||| ||||| || |||||||||||||| | |||
Sbjct 21088197 AGGGTCCTACCATCCTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGA 21088256
Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCAC 39236
| | ||| |||||| ||| || || | | ||| | | | ||||| ||||| ||
Sbjct 21088257 ATCCCCTCCTTGTCCTGGATCTT-TGCCTTAACGTTGTCAATGGTATCAGAAGACTCAAC 21088315
Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|| | |||||| | || || |||| || || ||||||||||||||
Sbjct 21088316 CTCAAGGGTGATAGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 21088363
>seq6
Length=30401905
Score = 105 bits (116), Expect = 6e-18
Identities = 164/232 (71%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 39054 CAAGCCTCCTCTTAAGCGTAA-CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAAT 39112
|| |||||| || | || ||| ||| | || || ||| |||||| || || || ||||
Sbjct 26902859 CATGCCTCCCCTCA-GCCTAAGCACAAGGTGAAGAGTGGACTCTTTCTGAATGTTGTAAT 26902801
Query 39113 CGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGG 39172
| || || || || |||| |||||||| ||||| ||||| || |||||||||||||| |
Sbjct 26902800 CAGCCAGGGTCCGACCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCAG 26902741
Query 39173 TGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACT 39232
|| | | ||| |||||| ||| ||| || | | | | ||| || |||||
Sbjct 26902740 GAGGGATCCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATCGTGTCCGACGACT 26902681
Query 39233 CCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
| || || | ||||| | ||||| |||| || || |||||||| |||||
Sbjct 26902680 CGACCTCGAGAGTGATGGTCTTTCCTGTCAAGGTCTTCACAAAGATCTGCAT 26902629
Score = 91.5 bits (100), Expect = 1e-13
Identities = 152/217 (70%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128
||| | ||||| || | ||| ||| || || || || ||||| || || || ||| |
Sbjct 26903072 GCGGAGCACCAGGTGCAAGGTGGACTCCTTCTGAATGTTGTAATCAGCCAGGGTGCGTCC 26903013
Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188
|| || ||||| ||||| ||||| || || ||||||||||| | ||| | | ||| ||
Sbjct 26903012 ATCCTCGAGCTGCTTGCCTGCAAAGATGAGGCGCTGCTGGTCCGGGGGAATCCCCTCCTT 26902953
Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247
|||| ||| ||| || | ||| | | | |||||| ||||| || || | ||| |
Sbjct 26902952 GTCCTGGATCTTCGCCTTCA-CGTTGTCGATCGTATCAGAAGACTCAACCTCAAGCGTAA 26902894
Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
| | || || ||||| || || ||||| || |||||
Sbjct 26902893 TGGTCTTGCCGGTCAGGGTCTTGACAAAAATCTGCAT 26902857
Score = 86.0 bits (94), Expect = 5e-12
Identities = 142/205 (69%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141
|| || ||| ||| || || || || || ||||| || || || | || ||||||||
Sbjct 27218337 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCCTCAAGCTGC 27218278
Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201
||||| || || || |||||||||||||| | ||| | || ||| |||||| ||| ||
Sbjct 27218277 TTGCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTG 27218218
Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTC 39261
|||| | | | || || ||||| || || | ||||| | || || ||
Sbjct 27218217 GCCTTGACATTGTCAATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGTG 27218158
Query 39262 AGCGTTTTAACAAAGATTTGCATCT 39286
|| || || |||||||| |||||||
Sbjct 27218157 AGGGTCTTCACAAAGATCTGCATCT 27218133
>seq1
Length=43445878
Score = 104 bits (114), Expect = 2e-17
Identities = 164/235 (70%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 39052 TTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAA 39111
|||| ||| || | | ||| | ||||| || ||||| ||| || || || || ||
Sbjct 21648070 TTCAGGCCGCCGCGGAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAG 21648129
Query 39112 TCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCG 39171
||||| || || || |||| || ||||| ||||| || || || || |||||||||||
Sbjct 21648130 TCGGCCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCC 21648189
Query 39172 GTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGAC 39231
| || | | ||| |||||| | ||| |||| || | ||| ||||| |
Sbjct 21648190 GGCGGGATCCCCTCCTTGTCCTGCACCTTCGCCTTGACGTTCTGGATCGTGTCGCTGCTC 21648249
Query 39232 TCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286
||||| |||| |||||| | || |||||||| || || || ||||| |||||||
Sbjct 21648250 TCCACCTCCAGCGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATCT 21648304
Score = 102 bits (112), Expect = 7e-17
Identities = 156/220 (71%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128
||| | ||||| || || || ||| || || || || || ||||| || || || |
Sbjct 9972242 GCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCC 9972183
Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188
||| || ||||| ||||| || || || || ||||||||||||| || | | ||| ||
Sbjct 9972182 GTCCTCCAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCGGGCGGGATCCCCTCCTT 9972123
Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247
|||| ||| ||| || | ||| | | | || || |||||||| |||| |||||
Sbjct 9972122 GTCCTGGATCTTCGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGA 9972064
Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287
| | || |||||||| || || || ||||| ||||||||
Sbjct 9972063 TCGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATCTT 9972024
Score = 102 bits (112), Expect = 7e-17
Identities = 156/220 (71%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128
||| | ||||| || || || ||| || || || || || ||||| || || || |
Sbjct 9981450 GCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCC 9981391
Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188
||| || ||||| ||||| || || || || ||||||||||||| || | | ||| ||
Sbjct 9981390 GTCCTCCAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCGGGCGGGATCCCCTCCTT 9981331
Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247
|||| ||| ||| || | ||| | | | || || |||||||| |||| |||||
Sbjct 9981330 GTCCTGGATCTTCGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGA 9981272
Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287
| | || |||||||| || || || ||||| ||||||||
Sbjct 9981271 TCGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATCTT 9981232
>seq2
Length=36083738
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117
|| || |||| ||| | || | ||| || ||| ||| || || || || || ||||||
Sbjct 2262747 CCACCCCTTAGGCGCAGAACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCA 2262806
Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177
|| || | | || || ||||| ||||| ||||| || || ||||||||||| | |||
Sbjct 2262807 AGGGTCCTGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCTGGGGGA 2262866
Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCAC 39236
| || ||| |||||| ||| || |||| ||| | | | || || ||||||||
Sbjct 2262867 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCAGAAGACTCCAC 2262925
Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|| | ||||| | || || ||||| || || || ||||| |||||
Sbjct 2262926 CTCAAGGGTGATGGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCAT 2262973
Score = 91.5 bits (100), Expect = 1e-13
Identities = 143/205 (70%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141
|| || ||| ||| || || || || || || ||||| || | | || || |||||
Sbjct 2262999 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCATCCTCCAGCTGC 2263058
Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201
||||| ||||| || |||||||||||||| | ||| | || ||| |||||| ||| ||
Sbjct 2263059 TTGCCAGCAAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTG 2263118
Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTC 39261
|||| | | | || || |||||||| || | |||||| | || || |||
Sbjct 2263119 GCCTTGACATTGTCGATGGTGTCAGAGGACTCCACCTCGAGGGTGATAGTCTTGCCGGTC 2263178
Query 39262 AGCGTTTTAACAAAGATTTGCATCT 39286
| || || |||||||| |||||||
Sbjct 2263179 AATGTCTTCACAAAGATCTGCATCT 2263203
>seq4
Length=32292456
Score = 84.2 bits (92), Expect = 2e-11
Identities = 135/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152
||| || || || |||||||| || || || || | || |||||||| ||||| || ||
Sbjct 28749496 CTCCTTCTGGATGTTATAATCCGCGAGAGTACGCCCATCCTCAAGCTGCTTGCCAGCGAA 28749437
Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212
||||| ||||||||||| | || | || ||| || ||| || || || | |
Sbjct 28749436 GATAAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTATCCTGAATCTTAGCCTTCACATT 28749377
Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272
| | ||||||| ||||| || |||| ||||| | || || || || || |||||
Sbjct 28749376 GTCAATCGTATCGGAGGACTCAACCTCCAAGGTGATGGTCTTGCCAGTGAGGGTCTTAAC 28749317
Query 39273 AAAGATTTGCATCT 39286
|| || |||||||
Sbjct 28749316 GAATATCTGCATCT 28749303
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429494882477144
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