Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21]
9,688 sequences; 362,063,720 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq6 102 6e-17
seq9 93.3 3e-14
>seq6
Length=30401905
Score = 102 bits (112), Expect = 6e-17
Identities = 143/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || || ||| | || ||||| || ||||||||||| || || || ||
Sbjct 26902629 ATGCAGATCTTTGTGAAGACCTTGACAGGAAAGACCATCACTCTCGAGGTCGAGTCGTCG 26902688
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || ||| | || | || | | ||||| || || | || || || ||
Sbjct 26902689 GACACGATCGACAATGTGAAGGCGAAGA-TCCAGGACAAGGAGGGGATCCCTCCTGACCA 26902747
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||| | || ||||||||||| || || || |||| || || | | ||||||||
Sbjct 26902748 GCAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAGGACGGTCGGACCCTGGCTGATTACAA 26902807
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || |||||||||||
Sbjct 26902808 CATTCAGAAAGAGTCCAC 26902825
Score = 93.3 bits (102), Expect = 3e-14
Identities = 141/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || || || ||||| || || || ||||| ||||| ||||| ||| |
Sbjct 26902401 ATGCAGATCTTTGTGAAGACACTCACTGGCAAGACCATCACCCTCGAGGTTGAGTCCTCT 26902460
Query 23671 GACACTGTTGAA-ATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| || |||| || | || | || | || ||||| || || | || || || ||
Sbjct 26902461 GATACAATTGACGATGTGAAGGCCAAGA-TTCAAGACAAGGAGGGCATTCCACCTGACCA 26902519
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|| ||| | || ||||| ||||| ||||| || || | ||||| | | ||||||||
Sbjct 26902520 GCAACGTCTCATCTTTGCTGGCAAGCAACTAGAGGATGGCCGCACCCTCGCGGATTACAA 26902579
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || ||||||||
Sbjct 26902580 CATCCAGAAGGAGTCCAC 26902597
>seq9
Length=22605696
Score = 93.3 bits (102), Expect = 3e-14
Identities = 83/104 (80%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763
||||| ||||| | || ||||||||||||||||| ||||| |||||||| || ||||||
Sbjct 12264341 GACAAGGAAGGGATCCCTCCAGATCAACAGCGTTTGATATTCGCCGGCAAGCAGCTGGAA 12264400
Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCAC 23807
|| | ||||| | | ||| |||||||| || || ||||| ||
Sbjct 12264401 GATGGGCGCACACTGGCCGACTACAACATTCAGAAGGAGTCAAC 12264444
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337969690361504
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |