Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21]
9,688 sequences; 362,063,720 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq5 102 1e-16
seq2 93.3 6e-14
>seq5
Length=25164199
Score = 102 bits (112), Expect = 1e-16
Identities = 155/221 (70%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813
|| || ||||| | ||| | |||||| | ||| |||| | | ||| |||| ||| ||
Sbjct 3366125 CCACCTTGATCAACATAACGGGCAGTATCATTGAAAACACGTAGCATAGGAACAATCCCA 3366184
Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873
|| || || |||||||||||| ||||| || ||| || |||||||| || |||
Sbjct 3366185 TTGGAGGTTCCATTTGTTCCACGGATATAGCTCCCAGTAGCTCGAATATTGTGAACTGAT 3366244
Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933
| || |||||||| || ||| || | |||||| ||||| || ||||||||
Sbjct 3366245 ACACCAATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTCAAAGTATCATAGATT 3366304
Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974
||||| || || ||||| ||||| | ||| || |||||
Sbjct 3366305 CCCTCAATGCTGTCATCTTTCATGCAGATAAGGAAGCAGCT 3366345
>seq2
Length=36083738
Score = 93.3 bits (102), Expect = 6e-14
Identities = 160/228 (70%), Gaps = 12/228 (5%)
Strand=Plus/Plus
Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813
|| || ||||| | ||| | ||||| | ||| |||| | || ||| |||| ||| ||
Sbjct 34745658 CCACCTTGATCAACATAACGTGCAGTATCATTGAAAACACGCAGCATGGGAACAATCCCA 34745717
Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873
|||||||| ||||||||||| ||| ||||| ||| || | |||||| ||| ||
Sbjct 34745718 TTAGATGTTCCATTTGTTCCTCGAATGTAACTCCCAGTAGCTCTAATATTGTGAATTGAG 34745777
Query 76874 AGGCCTATTCCTCCTGC-CATTTTAGAGATTA---GAGCACAGCGTTTCAATGTGTCATA 76929
|| || ||||| || || ||||| | ||| |||||| | | ||||||||
Sbjct 34745778 AGACCAATTCCACCAGCACATTT----GCTTATGGTAGCACATTCTGAGAGAGTGTCATA 34745833
Query 76930 GATGCCCTCTATACTATCATCCATCATGTTAAGA--AGAAAACAGCTA 76975
|| ||||| || |||||||| ||||| |||| || || ||||||
Sbjct 34745834 AATTCCCTCAATGCTATCATCTTTCATG--AAGATGAGGAAGCAGCTA 34745879
Score = 84.2 bits (92), Expect = 3e-11
Identities = 114/157 (73%), Gaps = 4/157 (3%)
Strand=Plus/Plus
Query 76492 CTCTCTTTCATATTG--TGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAA 76549
|||||||||||||| |||| | | | | ||| |||||||||||| ||| |||||
Sbjct 34745224 CTCTCTTTCATATTTCTTGTACAGATTC--TGAAACTCATCTCCCCAACAGTCAGCCAAA 34745281
Query 76550 CCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATA 76609
|| ||| |||||| ||||| | ||||||||| | ||| | | |||| || |||
Sbjct 34745282 CCTGGAGCTTCATTGGGACAAAACAATGACCAGTTTTCATTATTTTGCACCCTTTCCATG 34745341
Query 76610 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTC 76646
|| ||||| || ||||| || ||| || |||||||
Sbjct 34745342 AACAGATCCGGAATCCAGAGCGCATAGAAAAGATCTC 34745378
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712848063644160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |