Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21] 9,688 sequences; 362,063,720 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq5 102 1e-16 seq2 93.3 6e-14 >seq5 Length=25164199 Score = 102 bits (112), Expect = 1e-16 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || || ||||| | ||| | |||||| | ||| |||| | | ||| |||| ||| || Sbjct 3366125 CCACCTTGATCAACATAACGGGCAGTATCATTGAAAACACGTAGCATAGGAACAATCCCA 3366184 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || || || |||||||||||| ||||| || ||| || |||||||| || ||| Sbjct 3366185 TTGGAGGTTCCATTTGTTCCACGGATATAGCTCCCAGTAGCTCGAATATTGTGAACTGAT 3366244 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || |||||||| || ||| || | |||||| ||||| || |||||||| Sbjct 3366245 ACACCAATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTCAAAGTATCATAGATT 3366304 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974 ||||| || || ||||| ||||| | ||| || ||||| Sbjct 3366305 CCCTCAATGCTGTCATCTTTCATGCAGATAAGGAAGCAGCT 3366345 >seq2 Length=36083738 Score = 93.3 bits (102), Expect = 6e-14 Identities = 160/228 (70%), Gaps = 12/228 (5%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || || ||||| | ||| | ||||| | ||| |||| | || ||| |||| ||| || Sbjct 34745658 CCACCTTGATCAACATAACGTGCAGTATCATTGAAAACACGCAGCATGGGAACAATCCCA 34745717 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 |||||||| ||||||||||| ||| ||||| ||| || | |||||| ||| || Sbjct 34745718 TTAGATGTTCCATTTGTTCCTCGAATGTAACTCCCAGTAGCTCTAATATTGTGAATTGAG 34745777 Query 76874 AGGCCTATTCCTCCTGC-CATTTTAGAGATTA---GAGCACAGCGTTTCAATGTGTCATA 76929 || || ||||| || || ||||| | ||| |||||| | | |||||||| Sbjct 34745778 AGACCAATTCCACCAGCACATTT----GCTTATGGTAGCACATTCTGAGAGAGTGTCATA 34745833 Query 76930 GATGCCCTCTATACTATCATCCATCATGTTAAGA--AGAAAACAGCTA 76975 || ||||| || |||||||| ||||| |||| || || |||||| Sbjct 34745834 AATTCCCTCAATGCTATCATCTTTCATG--AAGATGAGGAAGCAGCTA 34745879 Score = 84.2 bits (92), Expect = 3e-11 Identities = 114/157 (73%), Gaps = 4/157 (3%) Strand=Plus/Plus Query 76492 CTCTCTTTCATATTG--TGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAA 76549 |||||||||||||| |||| | | | | ||| |||||||||||| ||| ||||| Sbjct 34745224 CTCTCTTTCATATTTCTTGTACAGATTC--TGAAACTCATCTCCCCAACAGTCAGCCAAA 34745281 Query 76550 CCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATA 76609 || ||| |||||| ||||| | ||||||||| | ||| | | |||| || ||| Sbjct 34745282 CCTGGAGCTTCATTGGGACAAAACAATGACCAGTTTTCATTATTTTGCACCCTTTCCATG 34745341 Query 76610 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTC 76646 || ||||| || ||||| || ||| || ||||||| Sbjct 34745342 AACAGATCCGGAATCCAGAGCGCATAGAAAAGATCTC 34745378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712848063644160