Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq9 105 1e-17 seq12 104 5e-17 seq10 104 5e-17 seq7 104 5e-17 seq6 104 5e-17 seq5 104 5e-17 seq1 104 5e-17 seq3 100 6e-16 seq8 98.7 2e-15 >seq9 Length=18641908 Score = 105 bits (116), Expect = 1e-17 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 165706 GCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTC 165765 ||| ||||||||||||||||||||||||||| || || |||| || |||||||||||||| Sbjct 8248379 GCTGGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTC 8248320 Query 165766 GAGCCCCACGATGGGC 165781 |||||||||| ||||| Sbjct 8248319 GAGCCCCACGGTGGGC 8248304 Score = 105 bits (116), Expect = 1e-17 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||||||||||||||||||||||||| || || |||| || ||||||||||||||||| Sbjct 10316552 TGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 10316611 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 10316612 CCCCACGGTGGGC 10316624 >seq12 Length=19964954 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 16159743 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 16159684 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 16159683 CCCACGGTGGGC 16159672 >seq10 Length=17741381 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 11969731 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 11969672 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 11969671 CCCACGGTGGGC 11969660 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 16376798 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 16376739 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 16376738 CCCACGGTGGGC 16376727 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || ||| || |||||||||||||||||| Sbjct 16377031 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTACCCTTGTGGTCGTGGGTTCGAGC 16376972 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 16376971 CCCACGGTGGGC 16376960 >seq7 Length=26849004 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 6936630 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 6936571 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 6936570 CCCACGGTGGGC 6936559 >seq6 Length=31808207 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 7943109 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 7943168 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 7943169 CCCACGGTGGGC 7943180 >seq5 Length=26596109 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 14363517 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 14363458 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 14363457 CCCACGGTGGGC 14363446 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 14366602 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 14366543 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 14366542 CCCACGGTGGGC 14366531 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 24113783 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 24113724 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 24113723 CCCACGGTGGGC 24113712 >seq1 Length=41795227 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 76551 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 76492 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 76491 CCCACGGTGGGC 76480 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 40748505 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 40748446 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 40748445 CCCACGGTGGGC 40748434 >seq3 Length=38314702 Score = 100 bits (110), Expect = 6e-16 Identities = 76/89 (85%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 165695 GGACTTAAAAC--GCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGG 165752 ||| |||||| || |||||||||||||||| |||||||||| || || |||| || | Sbjct 18363656 GGAATTAAAATCAGCAAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTG 18363715 Query 165753 TGGTCGTGGGTTCGAGCCCCACGATGGGC 165781 ||||||||||||||||||||||| ||||| Sbjct 18363716 TGGTCGTGGGTTCGAGCCCCACGGTGGGC 18363744 >seq8 Length=21838022 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 19043125 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 19043184 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 19043185 CCCACGGTGGGC 19043196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057823837359560