Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27]
12 sequences; 335,668,232 total letters
Query= NC_002686.2
Length=124784
Score E
Sequences producing significant alignments: (Bits) Value
seq11 96.9 3e-15
seq12 91.5 1e-13
>seq11
Length=24454635
Score = 96.9 bits (106), Expect = 3e-15
Identities = 79/96 (82%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 20458 TCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCA 20517
||||| || ||||||||||| || |||||||||||||| |||||||| ||||| ||||||
Sbjct 14798860 TCGTGCCAGATGTATCAACGCTCTGCTGATATGGGACTTGGTGTTCCATTCAACATTGCA 14798919
Query 20518 AGTTATGCGCTGCTTACGTATATGATTGCACATGTT 20553
||| | || || || || |||||||| ||||||
Sbjct 14798920 TCATATTCTCTTCTGACATACATGATTGCTCATGTT 14798955
>seq12
Length=19964954
Score = 91.5 bits (100), Expect = 1e-13
Identities = 94/123 (76%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 20430 CCAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATAT 20489
||| ||||| |||| ||| || ||||| || || ||||| ||||| || ||||||||
Sbjct 10427120 CCAGTTTTATGTTGAGAATGGGGAGTTGTCATGCCAGATGTACCAACGCTCTGCTGATAT 10427179
Query 20490 GGGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACA 20549
||| || ||||| || ||||| |||||| ||| | || || || | ||||||||||||
Sbjct 10427180 GGGGCTCGGTGTGCCATTCAACATTGCATCATATTCTCTTCTGACATGTATGATTGCACA 10427239
Query 20550 TGT 20552
||
Sbjct 10427240 AGT 10427242
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 399183941619340
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |