Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq6 98.7 2e-15 seq2 95.1 3e-14 seq12 86.0 1e-11 >seq6 Length=31808207 Score = 98.7 bits (108), Expect = 2e-15 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 || || || || || | |||| |||||| || ||||||| ||| || ||||| ||| || Sbjct 4542080 GACTTCGATTATGACTATTTTGGTTTCAAGACTCTGGAGAGATCTTACCTCCTGAAACTT 4542021 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 | || ||| | || ||| | ||||||||||| ||| |||| | || || || ||| Sbjct 4542020 GGCGGGAAGGTTGTTGAAAGGCCACAGCACATGTTAATGAGAGTTTCAGTGGGTATACAC 4541961 Query 248929 AAGGATGACATAGAGAGCGTGCTCGAGACGTA-CACCGGAATGAGTGAACGCTGGATGAC 248987 ||||||||||| ||| | || |||| || || | | ||| | | |||||| | || Sbjct 4541960 AAGGATGACATTGAGTCTGCTATCAAGACCTACCATCTG-ATGTCTCAGCGCTGGTTTAC 4541902 Query 248988 ACATGCCACACCGACGCTCTTCAACGCCGGTAC 249020 ||||| | ||||| || ||||| || || || Sbjct 4541901 TCATGCTTCGCCGACCCTTTTCAATGCTGGCAC 4541869 >seq2 Length=37273066 Score = 95.1 bits (104), Expect = 3e-14 Identities = 154/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 248805 CAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAA 248864 || |||||| || || || | ||||| ||| || || || |||| ||| ||||| | || Sbjct 35539616 CAGAGATTTTGACTATGACTACTTTGGTTTTAAGACCCTTGAGAGATCTTATCTGTTAAA 35539675 Query 248865 AATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGAT 248924 | ||| ||| ||| | |||||| || ||||| ||| | ||| |||| || | ||||| Sbjct 35539676 AGTTGGTGGAAAGGTTGTGGAAAGACCACAGCATATGCTAATGAGAGTTTCTATTGGGAT 35539735 Query 248925 TCACAAGGATGACATAGAGAGCGTGC--TCGAGACGTACACCGGAATGAGTGAACGCTGG 248982 ||||||||||| || || | | ||| || | |||||| | ||| | | |||||| Sbjct 35539736 ACACAAGGATGATATTGA-ATC-TGCTATCAAAACGTACCACATGATGTCTCAGCGCTGG 35539793 Query 248983 ATGACACATGCCACACCGACGCTCTTCAACGCCGGTAC 249020 | || ||||| | || || || ||||| || || || Sbjct 35539794 TTTACTCATGCTTCGCCAACCCTTTTCAATGCTGGCAC 35539831 >seq12 Length=19964954 Score = 86.0 bits (94), Expect = 1e-11 Identities = 108/146 (74%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 239762 GTACTACGAATTCTTGGGTGTTGATGCG-GGCGCCGGTGACGAAGAGATAAAGAAAGCGT 239820 ||||||||| || | || || | ||| ||||||| | ||| ||||| ||| |||| Sbjct 18410632 GTACTACGACCTCCTCGGCGT-GCCGCGCGGCGCCGACGGCGACGAGATCAAGCGCGCGT 18410574 Query 239821 ACCGGCGTCTCGCCCTGCAGCACCACCCGGACAAGAACGGCGACCCGGAGAAGTTCAAGC 239880 ||||||| |||| || |||||||||||||||| ||||||| |||| ||||||| Sbjct 18410573 ACCGGCGCGCCGCCGTGACGCACCACCCGGACAAGGGCGGCGACGAGGAGGCGTTCAAGG 18410514 Query 239881 AGTTGACCGATGTGTACGACGTGCTC 239906 || || || | |||| | |||||| Sbjct 18410513 AGGTGGCCCGCGCGTACCAGGTGCTC 18410488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073766234908416