Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1 132 4e-26 seq5 116 3e-21 seq2 116 3e-21 seq9 111 1e-19 seq6 102 6e-17 >seq1 Length=41795227 Score = 132 bits (146), Expect = 4e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || || ||||||||| |||||||||||| || ||| |||| ||| Sbjct 11039183 ACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCCGTCCTCC 11039242 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| || | |||||| |||||||| || | |||||||||||| Sbjct 11039243 AGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCGGGCGGGATCCCCTCCTTGTCCTGG 11039302 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | ||||| ||||||||||| || |||||||| Sbjct 11039303 ATCTTCGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATCGTCTTC 11039362 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 |||||||| |||||||| ||||| ||||| ||| Sbjct 11039363 CCCGTCAGGGTCTTCACGAAGATCTGCATCTTG 11039395 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||||||||| ||||||||| |||||||||||| ||| ||| |||| ||| Sbjct 23460687 ACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGCCCGTCCTCC 23460628 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| || | |||||| ||||| || || | |||||||||||| Sbjct 23460627 AGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGC 23460568 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 | || ||| || | | |||| | | |||| |||||| || || ||||| Sbjct 23460567 ACCTTCGCCTTGACGTTCTGGATCGTGTCGCTGCTCTCCCCCTCCAGCGTGATGGTCTTC 23460508 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||||||| |||||||| ||||| ||||| Sbjct 23460507 CCCGTCAGGGTCTTCACGAAGATCTGCAT 23460479 Score = 87.8 bits (96), Expect = 1e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||||||||| ||||||||| |||||||||||| ||| ||| |||| ||||| || Sbjct 23465506 GTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCGTCCTCCAGCTG 23465447 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTC 45243 || |||||||| || | |||||| |||| || || || |||||| |||| Sbjct 23465446 CTTGCCGGCGAAGATGAGCCGCTGCTGGTGCGGCGGGACGCCCTCCCTGTC 23465396 >seq5 Length=26596109 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || ||| |||||||||||||||||||||| || || | || ||| Sbjct 22858463 ACCAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGCGAGGGTACGGCCATCTTCC 22858404 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| |||| ||||| ||||| || || | ||| ||||||||| Sbjct 22858403 AGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGG 22858344 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | ||| ||||| | |||||| |||||| Sbjct 22858343 ATCTTAGCCTTCACATTGTCGATGGTGTCGGAGCTCTCAACCTCGAGGGTAATGGTCTTG 22858284 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || |||||||| |||||||| ||||| Sbjct 22858283 CCAGTGAGAGTCTTGACAAAGATCTGCAT 22858255 Score = 105 bits (116), Expect = 5e-18 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||||||||| |||||||||||| || ||| | || || || || Sbjct 3748633 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCGAGCTG 3748574 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || |||||||| || | ||||| ||||| || || | || ||||||||| || || Sbjct 3748573 CTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATCCCTTCCTTGTCCTGGATCTT 3748514 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | ||||| ||||||||||| || || ||||| ||||| Sbjct 3748513 GGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATGGTCTTCCCCGT 3748454 Query 45313 CAGAGTCTTCACAAAGATTTGCATGTTG 45340 ||| |||||||| ||||| ||||| ||| Sbjct 3748453 CAGGGTCTTCACGAAGATCTGCATCTTG 3748426 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || |||||||||||||||||||||| || ||| | || ||| Sbjct 22858235 ACCAAGTGTAGGGTAGACTCCTTCTGAATGTTGTAGTCGGCAAGGGTGCGGCCATCCTCC 22858176 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| || | | ||| ||||| || || | |||||||| ||| Sbjct 22858175 AGCTGCTTACCAGCGAAGATGAGTCTCTGCTGGTCCGGGGGGATGCCCTCCTTATCCTGG 22858116 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | ||| ||||||| |||||| |||||| Sbjct 22858115 ATCTTCGCCTTCACGTTGTCGATGGTGTCTGAGCTCTCAACCTCCAAGGTAATAGTCTTG 22858056 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || |||||||| || || || ||||| Sbjct 22858055 CCAGTGAGAGTCTTGACGAAAATCTGCAT 22858027 Score = 100 bits (110), Expect = 2e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||||||||| ||||||||||| || | | | || || || || Sbjct 22857774 GTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTACCATCCTCGAGCTG 22857715 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || || || |||| ||||| ||||| || || | |||||||||||| || || Sbjct 22857714 CTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGAATCCCCTCCTTGTCCTGGATCTT 22857655 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 | |||||| | | | | || | ||||||||| | ||| || |||||||| || Sbjct 22857654 TGCCTTAACGTTGTCAATGGTATCAGAAGACTCCACCTCAAGGGTGATAGTCTTGCCAGT 22857595 Query 45313 CAGAGTCTTCACAAAGATTTGCATG 45337 || ||||| ||||||||||||||| Sbjct 22857594 CAAGGTCTTGACAAAGATTTGCATG 22857570 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 ||| || |||| || | || | ||| || ||| ||| ||||||||||||||||| Sbjct 7958448 GCCTCCCCTCAGCCTAAGCACAAGGTGAAGAGTGGACTCTTTCTGAATGTTGTAGTCCGC 7958507 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || ||| | || || || || || || ||||| || | ||||| ||||| || || Sbjct 7958508 CAAGGTCCGACCATCCTCAAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCAGGGGG 7958567 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGC-TGTCCCCACCCTCCA 45287 | ||||||||| ||| || ||| ||| | || | || | |||| ||| | Sbjct 7958568 AATACCCTCCTTATCCTGGATCTTTGCCTTCA-CGTTGTCAATCGTGTCTGAGGACTCAA 7958626 Query 45288 CCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||||| || || ||||| || |||| |||||||||||||| ||||| Sbjct 7958627 CCTCCAAAGTGATGGTCTTTCCTGTCAAGGTCTTCACAAAGATCTGCAT 7958675 >seq2 Length=37273066 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| |||||| ||||||||| |||||||||||| ||| ||| | || ||| Sbjct 4567320 ACCAGGTGGAGCGTGGACTCCTTCTGTATGTTGTAGTCGGCCAGGGTGCGTCCATCCTCC 4567379 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| |||| ||||| ||||| || || | |||||||||||| Sbjct 4567380 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCTGGGGGAATCCCCTCCTTGTCCTGG 4567439 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | ||| ||||||| || || ||||| Sbjct 4567440 ATCTTGGCCTTCACATTATCAATGGTGTCGGAGCTCTCAACCTCCAGAGTGATGGTCTTC 4567499 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| ||||||||| ||||| ||||| Sbjct 4567500 CCAGTCAAAGTCTTCACGAAGATCTGCAT 4567528 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| ||||| ||||||||| ||||||||||| || | |||| || || || Sbjct 4568009 GTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCGTCCTCAAGCTG 4568068 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || ||||| || || | ||||| ||||| || || | |||||||||||| || || Sbjct 4568069 CTTGCCGGCAAAAATGAGACGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTT 4568128 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | |||| | ||||||||| | ||| || |||||||| || Sbjct 4568129 GGCCTTGACGTTGTCGATGGTGTCAGAAGACTCCACCTCAAGGGTGATAGTCTTGCCGGT 4568188 Query 45313 CAGAGTCTTCACAAAGATTTGCATG 45337 ||||||||| || ||||| |||||| Sbjct 4568189 CAGAGTCTTGACGAAGATCTGCATG 4568213 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || || ||||||||| |||||||||||| || ||| | || || Sbjct 4567548 ACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCG 4567607 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || |||| ||||| ||||| || || | |||||||||||| Sbjct 4567608 AGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGGGGAATCCCCTCCTTGTCCTGG 4567667 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | ||| ||||||| ||| || ||||| Sbjct 4567668 ATCTTGGCCTTCACATTGTCGATGGTGTCTGAGCTCTCAACCTCCAGGGTGATGGTCTTC 4567727 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || ||||| |||||||| ||||| Sbjct 4567728 CCTGTGAGGGTCTTGACAAAGATCTGCAT 4567756 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| ||||||||||| || | |||| ||||| || || || ||||| Sbjct 4568249 CTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCGTCCTCCAGCTGCTTGCCAGCGAA 4568308 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | ||||| ||||| || || | |||||||| || || || ||| || Sbjct 4568309 AATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTATCTTGGATCTTAGCCTTGACATT 4568368 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | |||| | ||||||||| | ||| || |||||||| |||| |||||||| Sbjct 4568369 ATCAATGGTGTCAGAAGACTCCACCTCGAGGGTGATAGTCTTGCCGGTCAATGTCTTCAC 4568428 Query 45325 AAAGATTTGCAT 45336 |||||| ||||| Sbjct 4568429 AAAGATCTGCAT 4568440 >seq9 Length=18641908 Score = 111 bits (122), Expect = 1e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| || | || | |||||||| || || |||||||||||||||||||||| Sbjct 12149932 GCCACCCCTGAGCCTGAGGACCAAGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCGGC 12149873 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 |||| ||| | || ||||| || || |||||||||||||| |||||||| || ||||| Sbjct 12149872 CAGTGTGCGCCCATCTTCCAGCTGCTTGCCGGCGAATATCAAACGCTGTTGATCTGGAGG 12149813 Query 45229 CACACCCTCCTTGTCC 45244 | || ||||||||| Sbjct 12149812 GATCCCTTCCTTGTCC 12149797 >seq6 Length=31808207 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||||||||| |||||||||||| ||| ||| | || || || || Sbjct 29028417 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCCTCAAGCTG 29028358 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || ||||| || | ||||| ||||| || || | |||||||||||| || || Sbjct 29028357 CTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTT 29028298 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | ||||| ||| ||||| | ||| || |||||||| || Sbjct 29028297 GGCCTTGACATTGTCAATGGTGTCCGAGGACTCAACCTCAAGGGTGATGGTCTTGCCGGT 29028238 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || |||||||||||||| ||||| Sbjct 29028237 GAGGGTCTTCACAAAGATCTGCAT 29028214 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| || | || | |||| ||| || ||| ||||||||| ||||||||||| | Sbjct 29029170 CCACCCCTGAGCCTGAGAACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 29029111 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | ||| |||| ||||| || || |||||||| || | ||||| ||||| || || Sbjct 29029110 AAGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGG 29029051 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||||||||||||| || || ||| || | | |||| ||| ||| Sbjct 29029050 ATACCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATCGTGTCTGAGGACTCGACC 29028991 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | || || ||||| || ||||| ||||| || ||||| ||||| Sbjct 29028990 TCAAGCGTGATGGTCTTTCCGGTCAGGGTCTTGACGAAGATCTGCAT 29028944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395075142220252