Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq5 98.7 8e-16 seq6 86.0 5e-12 >seq5 Length=26596109 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/211 (71%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| |||||| || ||||| || || || |||||||| || | || | | ||||| Sbjct 7958011 CACCAGGTGCAAGGTGGACTCGTTCTGGATGTTGTAATCTGCTAAGGTGCGGCCATCCTC 7958070 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| || || ||| | || || |||||||||| ||| | |||||| ||||| Sbjct 7958071 GAGCTGCTTGCCAGCAAAGATCAGGG-CTGCTGATCCGGGGGAATGCCCTCCTTGTCCTG 7958129 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||| || |||||| | | | | || || | ||| || | |||||||||||| Sbjct 7958130 AATCTTTGCTTTTACGTTGTCAATTGTGTCTGACGACTCAACCTCCAGGGTAATGGTTTT 7958189 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || || || || |||||||| ||||||||| Sbjct 7958190 GCCAGTCAATGTCTTGACAAAGATTTGCATT 7958220 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | ||||||||||| ||||| ||||| || || | || | | ||||| Sbjct 22858236 CACCAAGTGTAGGGTAGACTCCTTCTGAATGTTGTAGTCGGCAAGGGTGCGGCCATCCTC 22858177 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| ||||| || | || ||||||||||| ||| ||| | |||||| || || Sbjct 22858176 CAGCTGCTTACCAGCGAAGATGAGTCTCTGCTGGTCCGGGGGGATGCCCTCCTTATCCTG 22858117 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || ||| || || | | ||| || || ||| || | |||||| || || Sbjct 22858116 GATCTTCGCCTTCACGTTGTCGATGGTGTCTGAGCTCTCAACCTCCAAGGTAATAGTCTT 22858057 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || || | ||| ||||| ||||| |||||| Sbjct 22858056 GCCAGTGAGAGTCTTGACGAAAATCTGCATT 22858026 >seq6 Length=31808207 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || ||||||||||| || ||||||||||| | || | | ||||| Sbjct 29029381 CACCAAGTGGAGTGTGGACTCCTTTTGGATGTTGTAATCCGCAAGGGTACGGCCATCCTC 29029322 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| ||||| ||| | || || | |||||| ||| ||| | |||||| ||||| Sbjct 29029321 AAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 29029262 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || ||| || || | | | | ||| ||| | ||| || | ||| ||||| || Sbjct 29029261 GATCTTCGCCTTCACGTTGTCAATAGTGTCGGACGACTCAACCTCAAGGGTGATGGTCTT 29029202 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | || ||||| || || ||||| Sbjct 29029201 GCCAGTCAGGGTCTTGACGAAGATCTGCAT 29029172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414572739368728