Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq5 131 4e-25 seq6 118 2e-21 seq4 107 4e-18 >seq5 Length=26596109 Score = 131 bits (144), Expect = 4e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || || ||||| || ||||| || | | || || ||||| ||||| |||||| Sbjct 7958218 ATTCCACCCCTGAGCCTGAGCACTAGGTGAAGGATCGACTCCTTCTGGATATTGTAGTCA 7958277 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || | ||||| || || || || || || || || || | ||| || || || Sbjct 7958278 GCCAGGGTGCGTCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGG 7958337 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || ||||||||||| || || ||||| || | ||||| || || Sbjct 7958338 GGGATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATTGTCGATTGTATCAGAAGACTCG 7958397 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || ||||||||||| || || || || || ||||| |||||||| Sbjct 7958398 ACCTCAAGCGTAATAGTCTTTCCGGTCAGGGTCTTGACAAAAATCTGCAT 7958447 Score = 127 bits (140), Expect = 5e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || || || | | | || || || | || || ||||||||||| || || || Sbjct 7958674 ATTCCTCCCCTGAGGCGATGGACAAGGTGGAGGGTGGACTCTTTCTGAATGTTGTAATCT 7958733 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || | ||||| || ||||| || || ||||| || || | ||| || ||||| Sbjct 7958734 GCGAGGGTGCGTCCGTCCTCAAGTTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCAGGT 7958793 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || ||||||||||| || || ||||| || | || || | || Sbjct 7958794 GGAATACCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATCGTGTCAGAGGACTCA 7958853 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||| || || ||||| ||||| ||||| || ||||| |||||||| Sbjct 7958854 ACCTCTAGGGTTATGGTCTTGCCAGTGAGTGTCTTCACAAAGATCTGCAT 7958903 Score = 111 bits (122), Expect = 4e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || |||||||| || || || | || || ||||||||||| || ||||| Sbjct 7958446 ATGCCTCCCCTCAGCCTAAGCACAAGGTGAAGAGTGGACTCTTTCTGAATGTTGTAGTCC 7958505 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | | || | ||| || || || || || ||||| || || || | ||| || ||||| Sbjct 7958506 GCCAAGGTCCGACCATCCTCAAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCAGGG 7958565 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || |||||||| |||||||| || || || || | || || | || Sbjct 7958566 GGAATACCCTCCTTATCCTGGATCTTTGCCTTCACGTTGTCAATCGTGTCTGAGGACTCA 7958625 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||||| | || || ||||| || || | || || ||||| ||||||||| Sbjct 7958626 ACCTCCAAAGTGATGGTCTTTCCTGTCAAGGTCTTCACAAAGATCTGCATT 7958676 Score = 111 bits (122), Expect = 4e-19 Identities = 149/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 |||| ||||| || |||||||| || ||||| | || || | || || || || || Sbjct 22858229 TGTAGGGTAGACTCCTTCTGAATGTTGTAGTCGGCAAGGGTGCGGCCATCCTCCAGCTGC 22858170 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||| || || || ||||| || || || || || || || |||||||| ||||| Sbjct 22858169 TTACCAGCGAAGATGAGTCTCTGCTGGTCCGGGGGGATGCCCTCCTTATCCTGGATCTTC 22858110 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGT 104535 || || || || || | ||| || || | || ||||| | ||||||||||| ||||| Sbjct 22858109 GCCTTCACGTTGTCGATGGTGTCTG-AGCTCTCAACCTCCAAGGTAATAGTCTTGCCAGT 22858051 Query 104536 AAGTGTTTTTACAAATATCTGCATT 104560 || || || || || ||||||||| Sbjct 22858050 GAGAGTCTTGACGAAAATCTGCATT 22858026 Score = 102 bits (112), Expect = 2e-16 Identities = 151/213 (71%), Gaps = 1/213 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || || || || || || || ||||| || || || || | || || | || || Sbjct 7958009 AGCACCAGGTGCAAGGTGGACTCGTTCTGGATGTTGTAATCTGCTAAGGTGCGGCCATCC 7958068 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || |||||||| || || ||| ||||| || || || || || || ||| Sbjct 7958069 TCGAGCTGCTTGCCAGCAAAGATCAGGG-CTGCTGATCCGGGGGAATGCCCTCCTTGTCC 7958127 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 ||||||||||||||||| || || | || || | || ||||| || ||||| || Sbjct 7958128 TGAATCTTTGCTTTTACGTTGTCAATTGTGTCTGACGACTCAACCTCCAGGGTAATGGTT 7958187 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || ||||| | ||| || ||||| || |||||| Sbjct 7958188 TTGCCAGTCAATGTCTTGACAAAGATTTGCATT 7958220 >seq6 Length=31808207 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || |||||||| || || || | || || ||||||||||| || || ||| Sbjct 28434747 ATGCCTCCCCTCAGCCTAAGCACAAGGTGAAGAGTGGACTCTTTCTGAATGTTGTAATCA 28434806 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || | || ||| || || || || || ||||| || || | ||| || |||||| Sbjct 28434807 GCCAGGGTCCGACTGTCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCAGGA 28434866 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || ||||| ||||| || || ||||| || | || || | || Sbjct 28434867 GGGATCCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATCGTGTCCGACGACTCG 28434926 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| || || | || || ||||| |||||||| Sbjct 28434927 ACCTCGAGAGTGATGGTCTTTCCTGTCAAGGTCTTCACAAAGATCTGCAT 28434976 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 |||| || || ||||| || || | ||| | || || ||||||||||| || || |||| Sbjct 26573012 TTCCACCCCTGAGCCTCAGGACCAAATGGAGCGTTGACTCTTTCTGAATGTTGTAATCAG 26572953 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 || || | || ||||| ||||| || || || ||||| ||||| || || || || | Sbjct 26572952 CTAATGTACGTCCATCTTCCAGTTGCTTCCCTGCGAAAATCAGCCTTTGCTGGTCTGGGG 26572893 Query 104451 GTATTCCTTCTTTATCCTGAA 104471 | || || ||||| ||||||| Sbjct 26572892 GAATACCCTCTTTGTCCTGAA 26572872 >seq4 Length=30391017 Score = 107 bits (118), Expect = 4e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || || || || || || || ||||| || ||||| || | ||||| | || || Sbjct 26504597 AGGACAAGGTGCAAGGTGGACTCCTTCTGGATGTTATAATCCGCGAGAGTACGCCCATCC 26504538 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || |||||||| || || | || || || ||||| || || || || ||| Sbjct 26504537 TCAAGCTGCTTACCAGCAAAGATAAGGCGTTGCTGGTCCGGAGGGATGCCCTCCTTGTCC 26504478 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| || || ||||| || | ||||| | || ||||| | || || ||| Sbjct 26504477 TGAATCTTAGCCTTCACATTGTCAATCGTATCAGAGGACTCGACCTCCAAGGTGATGGTC 26504418 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || || || ||||||||||| Sbjct 26504417 TTGCCAGTGAGGGTCTTAACGAATATCTGCAT 26504386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151398222972496