Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq2 98.7 8e-16 seq6 95.1 1e-14 seq5 93.3 4e-14 seq1 82.4 6e-11 >seq2 Length=37273066 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT--CGTCCTCCAGCT 48581 || || ||| |||||| || |||||||| ||||| || ||| || | |||||||||| Sbjct 4567782 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC-AAGGGTC-CTGCCATCCTCCAGCT 4567839 Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641 |||| || | | || | |||||||| ||| || | | ||||||||| || | Sbjct 4567840 GCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCT 4567899 Query 48642 TCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 | ||||| | | |||||||| | ||||||| ||||| || ||||| || |||| Sbjct 4567900 TGGCCTTGACATTGTCAATGGTATCAGAAGACTCCACCTCGAGGGTGATGGTCTTGCCGG 4567959 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726 | ||||| ||||| || |||||||| Sbjct 4567960 TCAGAGTCTTCACGAAGATCTGCAT 4567984 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT--CGTCCTCCAGCT 48581 ||||| || |||||| || |||||||| ||||| || ||| || |||||||||||| Sbjct 4568238 TGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGC-AAGGGTC-CTGCCGTCCTCCAGCT 4568295 Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641 |||| || || |||| | ||||||||| ||| || | | ||||| || || | Sbjct 4568296 GCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTATCTTGGATCT 4568355 Query 48642 TCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 | ||||| | | ||||| || | ||||||| ||||| || || || || |||| Sbjct 4568356 TAGCCTTGACATTATCAATGGTGTCAGAAGACTCCACCTCGAGGGTGATAGTCTTGCCGG 4568415 Query 48702 TGAGAGTTTTCACAAAAATCTGCATC 48727 | | || |||||||| ||||||||| Sbjct 4568416 TCAATGTCTTCACAAAGATCTGCATC 4568441 >seq6 Length=31808207 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| ||| |||||| || |||||||| |||||||| || |||||||||||||| Sbjct 29029146 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAAGGTGCGGCCGTCCTCCAGCTGC 29029087 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | ||||||||| ||| || | || ||||||||| || || Sbjct 29029086 TTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTG 29029027 Query 48644 TGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 ||| | | | || || || || | ||||| ||| | || ||||| || |||| Sbjct 29029026 GCCTTCACGTTGTCG--ATCGTGTCTGAGGACTCGACCTCAAGCGTGATGGTCTTTCCGG 29028969 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726 | || || || || || |||||||| Sbjct 29028968 TCAGGGTCTTGACGAAGATCTGCAT 29028944 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| | || ||| | ||| | ||||| ||| ||| || |||||||||||||||||| Sbjct 28434750 CCTCCCCTCAGCCTAAGCACAAGGTGAAGAGTGGACTCTTTCTGAATGTTGTAATCAGCC 28434809 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | || |||||| |||||||| ||| | | || | ||||||||| || || Sbjct 28434810 AGGGTCCGACTGTCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCAGGAGGG 28434869 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | | ||||||||| || ||| ||| | | | || || || | ||||| | Sbjct 28434870 ATCCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATCGTGTCCGACGACTCGACC 28434929 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||| || ||||| || || || | || |||||||| |||||||| Sbjct 28434930 TCGAGAGTGATGGTCTTTCCTGTCAAGGTCTTCACAAAGATCTGCAT 28434976 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || ||||||||||| |||| || | ||||| |||||||| ||| || | Sbjct 28434557 CTCCTTCTGGATGTTGTAATCTGCCAGGGTGCGTCCATCCTCAAGCTGCTTGCCGGCGAA 28434616 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652 || || |||||||| ||| || | | ||||||||| || ||| ||| | | Sbjct 28434617 GATCAAGCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTCGCCTTCACGTT 28434676 Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 | || || |||| | |||||| ||| | || ||||| || ||||| || || || Sbjct 28434677 GTCG--ATCGTATGAGAAGACTCAACCTCAAGCGTAATGGTCTTGCCGGTCAGGGTCTTG 28434734 Query 48713 ACAAAAATCTGCAT 48726 |||||||||||||| Sbjct 28434735 ACAAAAATCTGCAT 28434748 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCT 48575 ||| || || |||||| ||||||||| ||||||||||| || || || || | |||| Sbjct 29029381 CACCAAGTGGAGTGTGGACTCCTTTTGGATGTTGTAATCCGC-AAGGGTACGGCCATCCT 29029323 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 | ||||||||||| | | || | ||||||||| ||| || | | ||||||||| Sbjct 29029322 CAAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCT 29029263 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 || ||| ||| | | || || |||| ||||| ||| | || ||||| | Sbjct 29029262 GGATCTTCGCCTTCACGTTGTCAATAGTGTCGGACGACTCAACCTCAAGGGTGATGGTCT 29029203 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 | || || || || || || || ||||||||| Sbjct 29029202 TGCCAGTCAGGGTCTTGACGAAGATCTGCATC 29029171 >seq5 Length=26596109 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 48511 CCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTC 48570 ||| | ||||| ||||| | |||||| || || ||||| ||||||| || | Sbjct 7958232 CCTGAGCACTAGGTGAAGGATCGACTCCTTCTGGATATTGTAGTCAGCCAGGGTGCGTCC 7958291 Query 48571 GTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTT 48630 |||||| |||||||| ||| || | || | |||||||| ||| || | | ||||| Sbjct 7958292 GTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTT 7958351 Query 48631 GTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTAT 48690 |||| ||| ||| ||| | | | || ||||| | |||||| ||| | || || Sbjct 7958352 GTCCTGAATCTTCGCCTTCACATTGTCGATTGTATCAGAAGACTCGACCTCAAGCGTAAT 7958411 Query 48691 GGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || ||||| || || || |||||||||||||| Sbjct 7958412 AGTCTTTCCGGTCAGGGTCTTGACAAAAATCTGCAT 7958447 >seq1 Length=41795227 Score = 82.4 bits (90), Expect = 6e-11 Identities = 138/198 (70%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || || | ||| |||||||||||||||| ||| || | Sbjct 11039200 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAA 11039259 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652 || | |||||||| || ||| | | ||||||||| || ||| ||| | | Sbjct 11039260 GATGAGCCGCTGCTGGTCGGGCGGGATCCCCTCCTTGTCCTGGATCTTCGCCTTCACGTT 11039319 Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 | || ||||| || | |||||| ||| | || || || || || || || || ||| Sbjct 11039320 GTCG--ATGGTGTCCGAGGACTCCACCTCCAGCGTGATCGTCTTCCCCGTCAGGGTCTTC 11039377 Query 48713 ACAAAAATCTGCATCGTG 48730 || || ||||||||| || Sbjct 11039378 ACGAAGATCTGCATCTTG 11039395 Score = 82.4 bits (90), Expect = 6e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || |||| ||| |||||||||||||||| ||| || | Sbjct 23460670 CTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAA 23460611 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | |||||||| ||| ||| | | ||||||||| | ||| ||||| Sbjct 23460610 GATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGCACCTTCGCCTTGACGTT 23460551 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | || || ||| | |||| ||| | || ||||| || || || || || ||||| Sbjct 23460550 CTGGATCGTGTCGCTGCTCTCCCCCTCCAGCGTGATGGTCTTCCCCGTCAGGGTCTTCAC 23460491 Query 48715 AAAAATCTGCATC 48727 || ||||||||| Sbjct 23460490 GAAGATCTGCATC 23460478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421251138392012