Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq9 113 2e-20 seq8 113 2e-20 seq4 111 8e-20 seq7 109 3e-19 seq6 107 1e-18 seq2 107 1e-18 seq1 107 1e-18 seq10 105 3e-18 seq11 102 4e-17 seq5 100 1e-16 seq3 100 1e-16 >seq9 Length=18641908 Score = 113 bits (124), Expect = 2e-20 Identities = 76/86 (88%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| | ||||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 14801912 AAAAAATAATATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 14801853 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||| |||||||||| |||| Sbjct 14801852 GCTCTAACCAGCTGAGCTAATAGGCC 14801827 Score = 104 bits (114), Expect = 1e-17 Identities = 81/97 (84%), Gaps = 4/97 (4%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAAAT----TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTT 11492 || ||| |||||| | ||| ||||||||| | | |||||||| ||||||||||||| Sbjct 11579210 AAATAAAAAAAAAACTAATAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTT 11579269 Query 11493 ATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||| |||| |||||||||| |||| Sbjct 11579270 ATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCC 11579306 >seq8 Length=21838022 Score = 113 bits (124), Expect = 2e-20 Identities = 80/91 (88%), Gaps = 1/91 (1%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| || |||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 18510155 AAAAATTAATTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 18510096 Query 11505 CTCTRACCAACTGAGCTAATGGGCC-GTCGA 11534 |||| |||| |||||||||| |||| ||||| Sbjct 18510095 CTCTAACCAGCTGAGCTAATAGGCCAGTCGA 18510065 Score = 95.1 bits (104), Expect = 6e-15 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | || ||||| ||||||||||||||||||||||||||||| |||| | Sbjct 16286889 TGGCCCATGCAGGTCTCAAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 16286948 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 16286949 TGAGCTAATAGGCC 16286962 >seq4 Length=30391017 Score = 111 bits (122), Expect = 8e-20 Identities = 77/87 (89%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 11444 AAAAAATCA-AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||| || |||||||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 18984364 AAAAAAGCAGAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGA 18984305 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||| |||||||||| |||| Sbjct 18984304 CGCTCTAACCAGCTGAGCTAATAGGCC 18984278 Score = 109 bits (120), Expect = 3e-19 Identities = 71/79 (90%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 20798643 AAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 20798702 Query 11512 CAACTGAGCTAATGGGCCG 11530 || |||||||||| ||||| Sbjct 20798703 CAGCTGAGCTAATAGGCCG 20798721 Score = 105 bits (116), Expect = 3e-18 Identities = 76/86 (88%), Gaps = 3/86 (3%) Strand=Plus/Plus Query 11445 AAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||| |||| ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 20229830 AAAAA--AAATATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 20229887 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||||||||||||||| |||| Sbjct 20229888 GCTCTAACCAACTGAGCTAATAGGCC 20229913 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 20231327 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 20231386 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 20231387 TGAGCTAATAGGCC 20231400 >seq7 Length=26849004 Score = 109 bits (120), Expect = 3e-19 Identities = 74/84 (88%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||||| ||| ||||||||| | | |||||||| |||||||||||||||||||||||||| Sbjct 22732834 AAAATTAAAGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGC 22732775 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| |||| |||||||||| |||| Sbjct 22732774 TCTAACCAGCTGAGCTAATAGGCC 22732751 >seq6 Length=31808207 Score = 107 bits (118), Expect = 1e-18 Identities = 85/101 (84%), Gaps = 4/101 (4%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAAT--TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 |||| ||||| ||| ||||||||| | | |||||||| ||||||||||||||||||| Sbjct 23246888 AATAGAAAATTAAAAACTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGC 23246947 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC--GTCGACGA 11537 |||||||||| |||| |||||||||| |||| || ||||| Sbjct 23246948 ACGACGCTCTAACCAGCTGAGCTAATAGGCCTTGTTGACGA 23246988 >seq2 Length=37273066 Score = 107 bits (118), Expect = 1e-18 Identities = 85/101 (84%), Gaps = 4/101 (4%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAAT--TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 |||| ||||| ||| ||||||||| | | |||||||| ||||||||||||||||||| Sbjct 24009775 AATAGAAAATTAAAAACTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGC 24009716 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC--GTCGACGA 11537 |||||||||| |||| |||||||||| |||| || ||||| Sbjct 24009715 ACGACGCTCTAACCAGCTGAGCTAATAGGCCTTGTTGACGA 24009675 >seq1 Length=41795227 Score = 107 bits (118), Expect = 1e-18 Identities = 76/88 (86%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 ||||||| | || ||||||||| | | |||||||| |||||||||||||||||||||| Sbjct 37741554 ATAAAAAGTAAATATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACG 37741495 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||| |||||||||| |||| Sbjct 37741494 ACGCTCTAACCAGCTGAGCTAATAGGCC 37741467 Score = 105 bits (116), Expect = 3e-18 Identities = 74/85 (87%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 || ||| ||| ||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 41739108 AACAATAAAACTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 41739167 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||| |||||||||| |||| Sbjct 41739168 CTCTAACCAGCTGAGCTAATAGGCC 41739192 Score = 104 bits (114), Expect = 1e-17 Identities = 75/86 (87%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 11445 AAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| ||| ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 33198732 AAAAATAAAAGGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 33198673 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||| |||||||||| |||| Sbjct 33198672 GCTCTAACCAGCTGAGCTAATAGGCC 33198647 Score = 104 bits (114), Expect = 1e-17 Identities = 74/86 (86%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| || ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 33211417 AAAAAAAAAAGCTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 33211358 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||| |||||||||| |||| Sbjct 33211357 GCTCTAACCAGCTGAGCTAATAGGCC 33211332 Score = 100 bits (110), Expect = 1e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 25991447 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 25991506 Query 11516 TGAGCTAATGGGCCGTC 11532 ||||||||| |||| || Sbjct 25991507 TGAGCTAATAGGCCATC 25991523 >seq10 Length=17741381 Score = 105 bits (116), Expect = 3e-18 Identities = 71/80 (89%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 12864265 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 12864206 Query 11512 CAACTGAGCTAATGGGCCGT 11531 || |||||||||| |||||| Sbjct 12864205 CAGCTGAGCTAATAGGCCGT 12864186 >seq11 Length=24454635 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 19019769 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 19019828 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 19019829 CAGCTGAGCTAATAGGCC 19019846 Score = 87.8 bits (96), Expect = 9e-13 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || ||||||||| | | |||||||| |||||||||||||||||||| ||| |||| ||| Sbjct 562196 AAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAGGACACTCTAACC 562137 Query 11513 AACTGAGCTAAT 11524 | |||||||||| Sbjct 562136 AGCTGAGCTAAT 562125 >seq5 Length=26596109 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 21677829 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 21677888 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 21677889 TGAGCTAATAGGCC 21677902 >seq3 Length=38314702 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 16328057 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 16327998 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 16327997 TGAGCTAATAGGCC 16327984 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261491161756912