Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq3 515 4e-141 seq9 93.3 5e-14 >seq3 Length=38314702 Score = 515 bits (570), Expect = 4e-141 Identities = 703/976 (72%), Gaps = 4/976 (0%) Strand=Plus/Minus Query 170675 TGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCA 170734 ||| |||| ||| || || || | ||| | || ||||| ||||| || |||||||| Sbjct 24885142 TGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCC- 24885084 Query 170735 TGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGA 170793 | ||| | || || || || || ||| | || ||||||||||| |||||||| || Sbjct 24885083 TACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGA 24885024 Query 170794 TATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTC 170853 ||| || || || | || || ||| | |||||||| | || || ||||| || ||||| Sbjct 24885023 TATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTC 24884964 Query 170854 TGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGC 170913 |||||| | |||| |||| || || ||||| ||||| || || || |||||||| Sbjct 24884963 TGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGC 24884904 Query 170914 AGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTT 170973 || || | || |||||||| ||||| || |||||||| || || || || | ||||| Sbjct 24884903 TGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTT 24884844 Query 170974 CCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGACTAGGAAT 171033 | | |||| | || || |||||| | |||||||||| | | | || || || Sbjct 24884843 CTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTAT 24884784 Query 171034 GAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCT 171093 | | |||||||| ||| ||||| ||||| ||||| | || || ||| || ||| | Sbjct 24884783 GCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTT 24884724 Query 171094 TGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTAC 171153 | || || | ||||| || ||||||||||||||||| |||| || || ||||| Sbjct 24884723 GATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTAC 24884664 Query 171154 GTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATAT 171213 |||||||| ||| | || ||||| ||||| || ||||| || ||||| || || || || Sbjct 24884663 TTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACAT 24884604 Query 171214 GGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCTCTAGT 171273 | ||||||||| ||| | ||||| ||| || |||||||| ||||| ||||| | || Sbjct 24884603 GTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGT 24884544 Query 171274 GACATCTTCTCTAATCAGAGAGACAACTGAGAACGAGAGTCAAAACTACGGCTATAAGTT 171333 || ||| | | ||||| || || ||||| ||||| || | || || | || Sbjct 24884543 AACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCCGCTAATGAGGGTTACAGATT 24884484 Query 171334 CGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAAT 171393 || ||||| ||||| || ||||| ||||| || |||||||| || || || ||||||| Sbjct 24884483 TGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAAT 24884424 Query 171394 CTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTCCC 171453 |||||| ||||| || |||||||||||||| |||||||||||| | |||| | || Sbjct 24884423 CTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCC 24884364 Query 171454 TGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAACGG 171513 |||||| | | ||||| || || | ||||| |||| ||||| ||||| || ||||| Sbjct 24884363 TGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGG 24884304 Query 171514 ATTCAACTTCAACCAATCAGTTGTAGAT-GCAAACGGAAAGATTGTACCAACATGGGGAG 171572 |||||| ||||||||||| || || ||| || || || || | || |||| | Sbjct 24884303 ATTCAATTTCAACCAATCTGTAGTTGATAGCCAA-GGTCGCGTTATTAATACTTGGGCTG 24884245 Query 171573 ATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACACAACT 171632 || | | ||| | || || ||||| |||||||| ||||| ||| | ||||| ||||||| Sbjct 24884244 ATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACT 24884185 Query 171633 TCCCACTAGACCTAGC 171648 |||| ||||||||||| Sbjct 24884184 TCCCTCTAGACCTAGC 24884169 Score = 340 bits (376), Expect = 2e-88 Identities = 696/1038 (67%), Gaps = 21/1038 (2%) Strand=Plus/Plus Query 171795 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 171854 ||||| || | || || |||||| || || ||||| || || | ||||||||||| Sbjct 24894024 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTTGTTTTTGTAGGATGGTCTGGC 24894083 Query 171855 CTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTC 171914 || || ||||| ||||||||||| | || | ||||||||||| ||| || ||||| Sbjct 24894084 CTATTGCTTTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTT 24894143 Query 171915 GTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAACTTTTTA 171974 || || || ||||| || ||||| | || || ||| | || || || || ||| Sbjct 24894144 GTAACTTCTTGGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAATTTCTTA 24894203 Query 171975 ACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTATGGGGA 172034 || |||||||| || || |||| || | | | || | | ||| | |||||||| Sbjct 24894204 ACCGCAGCAGTTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGC 24894263 Query 172035 CCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTA 172094 || || |||||||| ||| || || |||| |||||||||||| || |||| ||||| Sbjct 24894264 CCGGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTT 24894323 Query 172095 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCAGGA 172154 || | ||||| | |||| ||| |||||||||||| | | || ||||| |||| | Sbjct 24894324 GCTCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGG 24894383 Query 172155 CTTGTTGGGATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTGCAGTATTCACG 172214 |||| | || ||||| || ||| | ||||||| | || || || || Sbjct 24894384 TCTGTTCAATTGCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTTGTT 24894443 Query 172215 AGCATCTTTCTAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCACCTTCATTTGGT 172274 | | || || || |||||| | || || |||||||||| || || ||||| Sbjct 24894444 TCCGTATTCCTGATTTATCCACTGGGGCAATCCGGTTGGTTCTTTGCGCCGAGTTTTGGC 24894503 Query 172275 GTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAAT 172334 || ||||| || ||||| | || | ||| | || || || || ||| || | || Sbjct 24894504 GTAGCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAAC 24894563 Query 172335 CCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACAT 172394 ||||||||||||||||| || || || || | || | || | ||||| || || ||| Sbjct 24894564 CCATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCAT 24894623 Query 172395 GGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAAGATT 172454 || ||||| || | ||||| | | ||| | || ||| ||| Sbjct 24894624 GGGGCAACCGTGGAAAACACTCTATTTGAGG------------ACGGTGATGGT------ 24894665 Query 172455 CAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAAACTTATAGTATGATT 172514 | | || ||| | || || | || || || | |||||||||||| ||| | Sbjct 24894666 ---GCAAATACCTTCCGCGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTC 24894722 Query 172515 ACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTTA 172574 || ||||| | || ||||| || || |||||| | || ||||| || ||| | | ||| Sbjct 24894723 ACCGCTAATCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTA 24894782 Query 172575 CACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTA 172634 || ||| ||||| | || ||||| |||| ||| | |||| |||| || | || Sbjct 24894783 CATTTCTTTATGCTATTTGTACCGGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGTC 24894842 Query 172635 GGTCTTGCACTTAACCTCAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAA 172694 || || || || ||||| | || || ||||| || || || || || | ||||| ||| Sbjct 24894843 GGCCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAA 24894902 Query 172695 GACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGCA 172754 || || || ||||| || |||||||| || || |||||| | || || ||||| | || Sbjct 24894903 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCG 24894962 Query 172755 TGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCCA 172814 |||||| || || ||||| || ||||| || || | ||||| || || || | ||| Sbjct 24894963 TGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCA 24895022 Query 172815 CGAGGCAACGCACTATAA 172832 || || ||||| || ||| Sbjct 24895023 CGTGGAAACGCTCTTTAA 24895040 >seq9 Length=18641908 Score = 93.3 bits (102), Expect = 5e-14 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 171387 GATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTG 171446 ||||||||||||| ||||| || |||||||||||||| |||||||||||| | |||| Sbjct 2646519 GATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTG 2646578 Query 171447 TATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACC 171506 | |||||||| | | ||||| || || | ||||| |||| ||||| ||||| | Sbjct 2646579 CTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATC 2646638 Query 171507 TTAA 171510 | || Sbjct 2646639 TAAA 2646642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570268714459680