Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq6 109 7e-19 >seq6 Length=31808207 Score = 109 bits (120), Expect = 7e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525 ||| || ||||| || | ||| || ||||| ||||||||||| | ||| | |||| Sbjct 4541868 AGTGCCAGCATTGAAAAGGGTCGGCGAAGCATGAGTAAACCAGCGCTGAGACATCAGATG 4541927 Query 63526 GTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTA 63584 ||| |||| ||||| || || || || | ||| || || || |||| || | ||||| Sbjct 4541928 GTAGGTCTTGATAGCAGACTCAATGTCATCCTTG-TGTATACCCACTGAAACTCTCATTA 4541986 Query 63585 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63644 |||||||||| || |||||||| | ||| | | ||||| | ||| ||| | |||| Sbjct 4541987 ACATGTGCTGTGGCCTTTCAACAACCTTCCCGCCAAGTTTCAGGAGGTAAGATCTCTCCA 4542046 Query 63645 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 ||| || ||||||||||||| || ||||| | || ||||| || Sbjct 4542047 GAGTCTTGAAACCAAAATAGTCATAATCGAAGTCCCTATCATAAATTAT 4542095 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 ||| || ||||| | || | || || | ||| |||| | | ||| |||| ||| || Sbjct 4541549 TCCACCTTGATCAACATAACGGGCAGTATCATTGAAAACACGTAGCATAGGAACAATCCC 4541608 Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345 |||||| || ||||| || || ||||||||| ||| | || |||||||| || ||| Sbjct 4541609 ATTGGAGGTTCCATTTGTTCCACGGATATAGCTCCCAGTAGCTCGAATATTGTGAACTGA 4541668 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405 | ||| ||||| || || ||| || | || ||| || || ||||||||||| Sbjct 4541669 GACACCAATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTCAAAGTATCATAGAT 4541728 Query 63406 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 63447 ||||| || || ||||| ||||| | || |||||||| Sbjct 4541729 TCCCTCAATGCTGTCATCTTTCATGCAGATAAGGAAACAGCT 4541770 Score = 82.4 bits (90), Expect = 1e-10 Identities = 83/107 (78%), Gaps = 6/107 (6%) Strand=Plus/Plus Query 62570 TCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTT---CA 62626 ||||| || |||||||||||||| || || || || || ||| |||| || ||| || Sbjct 4539966 TCTGCCAACCCTTGAACACCAATGCCAATTGGCCTGTGCCTCATATTTGATCTTTTTGCA 4540025 Query 62627 GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 62673 | ||| || ||| |||||||||||||| || ||||| |||||||| Sbjct 4540026 GTTTC---AACAGGGTAATAATTAATATCAATTATTTTGTTGAGATT 4540069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631904955200