Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq6 143 2e-29 seq5 109 5e-19 seq4 109 5e-19 seq2 104 2e-17 >seq6 Length=31808207 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||| || || ||||||| |||| || |||||||| Sbjct 28434976 ATGCAGATCTTTGTGAAGACCTTGACAGGAAAGACCATCACTCTCGAGGTCGAGTCGTCG 28434917 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| ||||| || ||| ||||| || ||||| || |||||||| Sbjct 28434916 GACACGATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGGATCCCTCCTGACCAG 28434857 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | || || ||| || ||| |||||||| Sbjct 28434856 CAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAGGACAGTCGGACCCTGGCTGATTACAAC 28434797 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||| ||||| ||||| || || | ||||| ||||| || ||||| Sbjct 28434796 ATTCAGAAAGAGTCCACTCTTCACCTTGTGCTTAGGCTGAGGGGAGG 28434750 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || ||||||| |||| || ||||| ||| Sbjct 28435204 ATGCAGATCTTTGTGAAGACACTCACTGGCAAGACCATCACCCTCGAGGTTGAGTCCTCT 28435145 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || ||||| | || | ||| ||||| || || |||||||||||||| Sbjct 28435144 GATACAATTGACGATGTGAAGGCCAAGATTCAA-GACAAGGAGGGCATTCCACCTGACCA 28435086 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || | || ||||| ||||| ||| |||| |||| ||||| | | |||||||| Sbjct 28435085 GCAACGTCTCATCTTTGCTGGCAAGCAACTAGAGGATGGCCGCACCCTCGCGGATTACAA 28435026 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || ||||| || || | || ||| | || || ||||| Sbjct 28435025 CATCCAGAAGGAGTCCACCCTCCACCTTGTCCTACGCCTCAGGGGAGG 28434978 >seq5 Length=26596109 Score = 109 bits (120), Expect = 5e-19 Identities = 165/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || |||| || | || || ||||| ||| Sbjct 7958903 ATGCAGATCTTTGTGAAGACACTCACTGGCAAGACCATAACCCTAGAGGTTGAGTCCTCT 7958844 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || || || || | || || | ||| ||||| || || |||||||||||| Sbjct 7958843 GACACGATTGA--CAATGTCAAGGCCAAGATTCAG-GACAAGGAGGGTATTCCACCTGAC 7958787 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | || ||||| ||||| ||| | || || | ||||| | | |||||| Sbjct 7958786 CAGCAGCGCCTCATCTTTGCGGGCAAGCAACTTGAGGACGGACGCACCCTCGCAGATTAC 7958727 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || ||||| ||||| ||||| || || | || | | || || ||||||| Sbjct 7958726 AACATTCAGAAAGAGTCCACCCTCCACCTTGTCCATCGCCTCAGGGGAGGAA 7958675 >seq4 Length=30391017 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||||||||| || ||||| | ||||| || |||| || | || || ||||||||| Sbjct 26504614 ATGCAAATATTCGTGAAGACCCTCACCGGCAAGACCATTACCCTGGAGGTCGAGTCGTCT 26504673 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| ||||| || ||| ||||| || || || ||||| ||||| Sbjct 26504674 GACACGATCGATAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCACCAGACCAG 26504733 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||| || || || | || |||| ||||| | | || ||||| Sbjct 26504734 CAGCGTCTCATCTTTGCTGGGAAGCAGCTCGAGGATGGCCGCACCCTTGCAGACTACAAC 26504793 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || ||||| |||||||| || || Sbjct 26504794 ATCCAAAAGGAATCCACCCTGCA 26504816 >seq2 Length=37273066 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||| || || ||||||| | || || ||| || Sbjct 4567528 ATGCAGATCTTCGTGAAGACTTTGACTGGGAAGACCATCACTCTGGAGGTTGAGAGCTCC 4567469 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || ||||| || ||| ||||| || |||||||| || ||||| Sbjct 4567468 GACACCATTGATAATGTGAAGGCCAAGATCCAGGACAAGGAGGGGATTCCCCCAGACCAG 4567409 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || || ||||| || | || |||| ||||| ||| ||| ||||| Sbjct 4567408 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGACGCACCCTGGCCGACTACAAC 4567349 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || |||||||| || | ||||| Sbjct 4567348 ATACAGAAGGAGTCCACGCTCCACCTGGTGCT 4567317 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||| ||||||| || | ||||| | || |||||||| ||| Sbjct 4568212 ATGCAGATCTTCGTCAAGACTCTGACCGGCAAGACTATCACCCTTGAGGTGGAGTCTTCT 4568153 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||| || || ||||| |||||||| Sbjct 4568152 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAG 4568093 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | |||||||||||||| || | || || | | || | | || ||||| Sbjct 4568092 CAGCGTCTCATTTTTGCCGGCAAGCAGCTTGAGGACGGCAGGACCCTTGCTGACTACAAC 4568033 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || || ||||| || | || || | || || ||||| Sbjct 4568032 ATCCAGAAGGAGTCGACGCTCCACCTTGTCCTCCGTCTCAGGGGAGG 4567986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327936625780