Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq6 87.8 1e-12 seq5 87.8 1e-12 seq1 87.8 1e-12 seq9 82.4 6e-11 seq3 82.4 6e-11 >seq6 Length=31808207 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| ||||||| ||||| || ||||| ||| ||| ||||||||||||||||| ||| Sbjct 28434750 CCTCCCCTCAGCCTAAGCACAAGGTGAAGAGTGGACTCTTTCTGAATGTTGTAATCAGCC 28434809 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | || ||| || | |||||||||||||| || || |||||||| || Sbjct 28434810 AGGGTCCGACTGTCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTC 28434862 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || || |||| || ||||| ||||| ||| ||||||||| |||||||| || ||| Sbjct 29029170 CCACCCCTGAGCCTGAGAACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 29029111 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || |||| |||| ||||||||||| || || || |||||||| ||| || Sbjct 29029110 AAGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGG 29029051 Query 34021 ACGCTCTCTTTGTCC 34035 | | ||| |||||| Sbjct 29029050 ATACCCTCCTTGTCC 29029036 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/137 (74%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| || |||| ||||| || || || ||| |||||||| |||||||| || || Sbjct 29028715 ACCTCCCCTGAGCCTGAGCACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGC 29028656 Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 || || || |||| |||| ||||||||||| || || || |||||||| ||| | Sbjct 29028655 -AAGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGG 29028597 Query 34019 GCACGCTCTCTTTGTCC 34035 | | || ||| |||||| Sbjct 29028596 GGATGCCCTCCTTGTCC 29028580 >seq5 Length=26596109 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || || |||| ||||| || ||||| | ||||||||| || ||||| || ||| Sbjct 7958221 CCACCCCTGAGCCTGAGCACTAGGTGAAGGATCGACTCCTTCTGGATATTGTAGTCAGCC 7958280 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| || | ||||||||||| || || ||||||||||| ||| || Sbjct 7958281 AGGGTGCGTCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGG 7958340 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTT--AATGGAACTC-ACACTATCAGTAGATTCG 34077 | || ||| |||||| ||| || ||| || | || | |||||| ||| ||| Sbjct 7958341 ATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATTG---TCGATTGTATCAGAAGACTCG 7958397 Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | ||| || || |||||||| || || || ||||| || ||||| Sbjct 7958398 ACCTCAAGCGTAATAGTCTTTCCGGTCAGGGTCTTGACAAAAATCTGCAT 7958447 Score = 84.2 bits (92), Expect = 2e-11 Identities = 153/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || |||||||| || | ||| ||| ||||| |||||||||||||| || || Sbjct 7958003 AGACGGAGCACCAGGTGCAAGGTGGACTCGTTCTGGATGTTGTAATCTGCTAAGGTGCGG 7958062 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || || | |||||||| ||||| |||||| ||||||||||| || | || ||| Sbjct 7958063 CCATCCTCGAGCTGCTTGCCAGCAAAGATCAGG-GCTGCTGATCCGGGGGAATGCCCTCC 7958121 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCATTCGACCGT 34088 |||||| | | | ||||||| | || | | || | || || || | || Sbjct 7958122 TTGTCC-TGAATCTTTGCTTTTACGTTGTCAATTGTGTCTGACGACTCAACCTCCAGGGT 7958180 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 || ||||| || || | ||| || ||||||||||||||| Sbjct 7958181 AATGGTTTTGCCAGTCAATGTCTTGACAAAGATTTGCATT 7958220 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || || || || || || ||||| ||| ||||||||| |||||||| || || Sbjct 22857797 CCTCCCCTGAGGCGGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC- 22857739 Query 33961 AATTGTCGCT--CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 || ||| || | || || | |||||||| ||||| ||||| |||||||| ||| | Sbjct 22857738 AAGGGTC-CTACCATCCTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGG 22857680 Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGC 34078 | | | ||| |||||| || ||| ||||| | | |||||| ||| || Sbjct 22857679 GAATCCCCTCCTTGTCCTGGATCTTTGCCTTAACGTTGTCAATGGTATCAGAAGACTCCA 22857620 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | || || || || || || | || || |||||||||||||| Sbjct 22857619 CCTCAAGGGTGATAGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 22857571 >seq1 Length=41795227 Score = 87.8 bits (96), Expect = 1e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || |||||||| || ||||| ||||||||| |||||||| || |||| ||| Sbjct 23460696 AGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGC 23460637 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| |||| ||||||||||| || || || |||||||| ||| ||| | | ||| Sbjct 23460636 CCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCC 23460577 Query 34030 TTGTCC 34035 |||||| Sbjct 23460576 TTGTCC 23460571 >seq9 Length=18641908 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || || |||| || |||| ||||| || |||||||||||||||||| || ||| Sbjct 12149931 CCACCCCTGAGCCTGAGGACCAAGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCGGCC 12149872 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | | ||| | || |||| ||||||||||| ||||||| ||||| ||||| Sbjct 12149871 AGTGTGCGCCCATCTTCCAGCTGCTTGCCGGCGAATATCAAACGCTGTTGATC 12149819 >seq3 Length=38314702 Score = 82.4 bits (90), Expect = 6e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || |||||||| ||||||||| ||||||||| |||||||| || |||| || Sbjct 9370249 AGGCGAAGCACCAGGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGG 9370190 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 | || |||| ||||| ||||| || || ||||||||||| ||| Sbjct 9370189 CCATCCTCCAGCTGCTTCCCGGCGAAGATGAGGCGCTGCTGGTCC 9370145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397062341929624