Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq6 131 2e-25 >seq6 Length=31808207 Score = 131 bits (144), Expect = 2e-25 Identities = 283/419 (68%), Gaps = 6/419 (1%) Strand=Plus/Plus Query 10775 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 10834 ||||||| || ||||| || | || ||||| || || ||| |||| || | ||| Sbjct 31393705 ACGGTGACCTGCCGATCGAACCTCCCAGGGCGAAGAAGCGCGGCGTCGAGCACGTCAGGC 31393764 Query 10835 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTC 10894 | ||| ||||| |||| |||| || || | | |||| ||||||||||| ||| Sbjct 31393765 CTGTTTGTCGCGGCGAGCACAATGACACCGCTGTTCCCGGCAAATCCATCCATCTCCGTC 31393824 Query 10895 AAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGGCATACCA--CCCGCACTGC 10952 ||||| || |||||||| || || | |||||||| | | | | | || |||| | Sbjct 31393825 AAGAGCTGGTTGATGGTCTGCTCCCTCTCATCATTTCC--ACCTCCGAGCCCAGCACCAC 31393882 Query 10953 GTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGG 11012 | ||| | |||||||| ||||||||||| ||||| ||||| || || || | || Sbjct 31393883 GCTGCCTCCCGACGGCATCAATTTCATCAATGAAGACGATGCAAGGGGCCTTGGCCTTGG 31393942 Query 11013 CAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAAT 11072 | || || | || | ||| || |||||||||||| || |||| || || || | Sbjct 31393943 CCTTCTCGAACAGGTCCCTGACCCTGGAGGCACCGACACCGACGAACAGCTCGACGAACT 31394002 Query 11073 TGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGA 11132 || |||| || || ||| || || || || ||||||| ||| || || || | Sbjct 31394003 CGGACGCGGCGCAGGAGAAGAATGGCACTCCGGCCTCCCCCGCGACGGCACGCGCCAGCA 31394062 Query 11133 GGGTCTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGT-GGGATCCTGGCACC 11190 | |||||||| || || || || |||| | |||| | | | |||||| |||| || Sbjct 31394063 GTGTCTTCCCGGTTCCGGGCGGGCCGACGAGCA-GGCATCCCTTGGGGATCTTGGCCCC 31394120 Score = 102 bits (112), Expect = 1e-16 Identities = 228/341 (67%), Gaps = 6/341 (2%) Strand=Plus/Plus Query 8590 CCTTCTATCCACGATCCGTCTATGGCGTCTCAAAGGTTGCGGCACATTGGCTCGTGAAGA 8649 ||||| | || || ||| ||| | || | | ||||| || || || ||| | | Sbjct 1989225 CCTTCCACCCGCGCTCCCCCTACGCCGCCGCCAAGGTCGCCGCCCACTGGTACACCGTCA 1989284 Query 8650 ATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCCGGTATTCTCTTCAACCACGAGTCAC 8709 | ||||| || |||| || ||||| || ||| ||| | ||||||||||||||||| | Sbjct 1989285 ACTACCGCGAGGCCTACGGCCTCTTCGCCTGCAACGGCGTGCTCTTCAACCACGAGTCGC 1989344 Query 8710 CCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACCGATGGTATCAAACAAATC---G 8766 | || || ||| | | ||||| || ||||||||| | || | |||| | Sbjct 1989345 CGCGCCGCGGCGAGAACTTCGTCACCCGCAAGATCACCCGCGCCGTCGGCCGAATCAAGG 1989404 Query 8767 TCGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTGGGGAC 8826 ||| ||| || || | | || |||||| ||||| |||||||||||| Sbjct 1989405 TCGGCCTCCAGACCAAGGTCTTCC---TCGGCAACCTCTCCGCCGCCAGGGACTGGGGAT 1989461 Query 8827 ACGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAGAGGCGGACGAAT 8886 |||| |||||| || || || ||||||| | | || || || || || | | ||| | Sbjct 1989462 TCGCCGGGGACTACGTCGAGGCAATGTGGCGCATGCTGCAGCAGGACAAGCCCGGCGACT 1989521 Query 8887 ATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTC 8927 | |||||||| || | |||| | ||| ||||| ||||||| Sbjct 1989522 ACGTCGTCGCCACCGAGGAGTCCCACACCGTCGAGGAGTTC 1989562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597353510396960