Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq6 125 8e-24 seq1 113 5e-20 seq5 109 6e-19 seq2 107 2e-18 seq4 102 9e-17 >seq6 Length=31808207 Score = 125 bits (138), Expect = 8e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 |||||| || | |||| ||||||||| || |||||||| || || || || | || || Sbjct 29029381 CACCAAGTGGAGTGTGGACTCCTTTTGGATGTTGTAATCCGCAAGGGTACGGCCATCCTC 29029322 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 |||||||||||||| || || || ||||||||||| | || | || |||||||||| Sbjct 29029321 AAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 29029262 Query 42119 GATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 42177 ||| || || | ||| | | | |||||| ||| || || || | |||||||| | Sbjct 29029261 GATCTTCGCCTTCA-CGTTGTCAATAGTGTCGGACGACTCAACCTCAAGGGTGATGGTCT 29029203 Query 42178 TGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| || || ||||| || ||||| ||||| Sbjct 29029202 TGCCAGTCAGGGTCTTGACGAAGATCTGCAT 29029172 Score = 116 bits (128), Expect = 4e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 ||||| || | ||| |||||| || || ||||| ||||| || || || |||| || Sbjct 29028925 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGGCCGTCCTC 29028866 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 |||||||| |||||||| ||||| ||||||||||| | || | || |||||||||| Sbjct 29028865 CAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 29028806 Query 42119 GATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 42177 ||| || || | ||| | | | |||||| || || || || | |||||||| | Sbjct 29028805 GATCTTGGCCTTCA-CGTTGTCGATCGTGTCCGAGGACTCGACCTCAAGTGTGATGGTCT 29028747 Query 42178 TGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| || || ||||| || ||||| ||||| Sbjct 29028746 TGCCGGTCAGGGTCTTGACGAAGATCTGCAT 29028716 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || ||||| || || | || || |||||||| |||||||| Sbjct 29028405 CTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAA 29028346 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| | || | || |||||||||| ||| || |||| | Sbjct 29028345 GATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATT 29028286 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | ||||| || || || || | |||||||| ||||| || || ||||| || Sbjct 29028285 GTCAATGGTGTCCGAGGACTCAACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTCAC 29028226 Query 42197 AAAGATTTGCATTTTCAC 42214 |||||| ||||| | ||| Sbjct 29028225 AAAGATCTGCATCTGCAC 29028208 Score = 113 bits (124), Expect = 5e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| || ||||| |||||||||||||| ||||| ||| || |||||||| || || || Sbjct 28434785 CTCTTTCTGAATGTTGTAATCAGCCAGGGTCCGACTGTCCTCAAGCTGCTTGCCGGCAAA 28434844 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| | || | | |||||||||| ||| || || | | Sbjct 28434845 GATGAGACGCTGCTGGTCAGGAGGGATCCCCTCCTTGTCCTGGATCTTCGCCTTCACATT 28434904 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | |||||| ||| || || |||| |||||||| || || || | ||||| || Sbjct 28434905 GTCGATCGTGTCCGACGACTCGACCTCGAGAGTGATGGTCTTTCCTGTCAAGGTCTTCAC 28434964 Query 42197 AAAGATTTGCAT 42208 |||||| ||||| Sbjct 28434965 AAAGATCTGCAT 28434976 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| ||||||| || || |||| || |||||||| || ||||| Sbjct 29029135 CTCCTTCTGGATGTTGTAGTCAGCCAAGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAA 29029076 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| | || | | |||||||||| ||| || || | ||| Sbjct 29029075 GATGAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTCA-CGT 29029017 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | |||||| || || || || | ||||||||| || || || || ||||| | Sbjct 29029016 TGTCGATCGTGTCTGAGGACTCGACCTCAAGCGTGATGGTCTTTCCGGTCAGGGTCTTGA 29028957 Query 42196 CAAAGATTTGCAT 42208 | ||||| ||||| Sbjct 29028956 CGAAGATCTGCAT 29028944 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 ||||| ||||| ||| |||||| || || |||||||| ||||| || || | || || Sbjct 28434539 CACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAATCTGCCAGGGTGCGTCCATCCTC 28434598 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 |||||||| || ||||| || | ||||||||||| | || | | |||||||||| Sbjct 28434599 AAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTG 28434658 Query 42119 GATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 42177 ||| || || | ||| | | | ||| | || || || || | ||| ||||| | Sbjct 28434659 GATCTTCGCCTTCA-CGTTGTCGATCGTATGAGAAGACTCAACCTCAAGCGTAATGGTCT 28434717 Query 42178 TGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| || || ||||| ||||| || ||||| Sbjct 28434718 TGCCGGTCAGGGTCTTGACAAAAATCTGCAT 28434748 >seq1 Length=41795227 Score = 113 bits (124), Expect = 5e-20 Identities = 144/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || || || || ||| |||| || |||||||| || ||||| Sbjct 11039200 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAA 11039259 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||||| || | | |||||||||| ||| || || | ||| Sbjct 11039260 GATGAGCCGCTGCTGGTCGGGCGGGATCCCCTCCTTGTCCTGGATCTTCGCCTTCA-CGT 11039318 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | ||||| || ||||| || | |||||| || || ||||| || ||||| | Sbjct 11039319 TGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATCGTCTTCCCCGTCAGGGTCTTCA 11039378 Query 42196 CAAAGATTTGCATTTT 42211 | ||||| ||||| || Sbjct 11039379 CGAAGATCTGCATCTT 11039394 Score = 113 bits (124), Expect = 5e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 ||||| |||| || |||||| || || ||||| || ||||| || ||| |||| || Sbjct 23460688 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGCCCGTCCTC 23460629 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 |||||||| || ||||| ||||| ||||||||||| | || | | |||||||||| Sbjct 23460628 CAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTG 23460569 Query 42119 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 | || |||| || | ||||||||| ||| | || | ||||||||| || Sbjct 23460568 CACCTTCGCCTTGACGTTCTGGATCGTGTCGCTGCTCTCCCCCTCCAGCGTGATGGTCTT 23460509 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||| || ||||| || ||||| ||||| Sbjct 23460508 CCCCGTCAGGGTCTTCACGAAGATCTGCAT 23460479 >seq5 Length=26596109 Score = 109 bits (120), Expect = 6e-19 Identities = 170/239 (71%), Gaps = 3/239 (1%) Strand=Plus/Plus Query 41972 AATTTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATT 42031 |||||| | || || | | ||| | ||||| ||||| ||| ||| || || || || Sbjct 7957984 AATTTAAAGGCCACCGCGGAGACGGAGCACCAGGTGCAAGGTGGACTCGTTCTGGATGTT 7958043 Query 42032 GTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTG 42091 |||||| || | || || | || || |||||||| ||||| || || || ||||||| Sbjct 7958044 GTAATCTGCTAAGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGG-GCTGCTG 7958102 Query 42092 GTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACC-GTGTCGC 42150 || | || | || |||||||||| ||| | |||| || ||| | || ||||| Sbjct 7958103 ATCCGGGGGAATGCCCTCCTTGTCC-TGAATCTTTGCTTTTACGTTGTCAATTGTGTCTG 7958161 Query 42151 TCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 ||| || || || | || ||||||||||| || | ||||| ||||||||||||||| Sbjct 7958162 ACGACTCAACCTCCAGGGTAATGGTTTTGCCAGTCAATGTCTTGACAAAGATTTGCATT 7958220 Score = 102 bits (112), Expect = 9e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| || ||||| |||||||| || || || || |||| || || ||||| || || || Sbjct 7958712 CTCTTTCTGAATGTTGTAATCTGCGAGGGTGCGTCCGTCCTCAAGTTGCTTGCCCGCAAA 7958771 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 ||||| ||||||||||| | ||| | | |||||||||| ||| | || | |||| Sbjct 7958772 GATGAGGCGCTGCTGGTCAGGTGGAATACCCTCCTTGTCC-TGAATCTTGGCCTTGACAT 7958830 Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | |||||| || || || || | || ||||| ||||| || || ||||| | Sbjct 7958831 TGTCAATCGTGTCAGAGGACTCAACCTCTAGGGTTATGGTCTTGCCAGTGAGTGTCTTCA 7958890 Query 42196 CAAAGATTTGCAT 42208 ||||||| ||||| Sbjct 7958891 CAAAGATCTGCAT 7958903 Score = 102 bits (112), Expect = 9e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || || ||||| ||||| || || ||| | || || |||||||| |||||||| Sbjct 22857533 TCCTTCTGGATGTTGTAGTCAGCAAGCGTGCGCCCATCTTCGAGCTGCTTGCCAGCGAAG 22857474 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 ||||| ||||||||||| | ||| | | |||||||||| ||| || || | | Sbjct 22857473 ATGAGACGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTTACATTG 22857414 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | || || || || || || | || ||||| ||||| || || ||||| ||| Sbjct 22857413 TCAATGGTATCCGAGGACTCAACCTCAAGGGTTATGGTCTTGCCAGTGAGAGTCTTCACA 22857354 Query 42198 AAGATTTGCAT 42208 ||||| ||||| Sbjct 22857353 AAGATCTGCAT 22857343 Score = 100 bits (110), Expect = 3e-16 Identities = 140/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| || ||||| ||||| || |||| ||||| | || || |||||||| |||||||| Sbjct 7958484 CTCTTTCTGAATGTTGTAGTCCGCCAAGGTCCGACCATCCTCAAGCTGCTTGCCAGCGAA 7958543 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||| | || | | |||||| ||| ||| ||| || | ||| Sbjct 7958544 GATAAGACGCTGCTGGTCAGGGGGAATACCCTCCTTATCCTGGATCTTTGCCTTCA-CGT 7958602 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | |||||| || || || || | |||||||| || || || | ||||| | Sbjct 7958603 TGTCAATCGTGTCTGAGGACTCAACCTCCAAAGTGATGGTCTTTCCTGTCAAGGTCTTCA 7958662 Query 42196 CAAAGATTTGCATT 42209 ||||||| |||||| Sbjct 7958663 CAAAGATCTGCATT 7958676 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || || || || || | || || |||||||| || ||||| Sbjct 3748621 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAA 3748562 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| | || | | ||||||||| ||| || || | ||| Sbjct 3748561 GATGAGGCGCTGCTGGTCCGGGGGGATCCCTTCCTTGTCCTGGATCTTGGCCTTCA-CGT 3748503 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | ||||| || ||||| || | ||||||||| || ||||| || ||||| | Sbjct 3748502 TGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATGGTCTTCCCCGTCAGGGTCTTCA 3748443 Query 42196 CAAAGATTTGCATTTT 42211 | ||||| ||||| || Sbjct 3748442 CGAAGATCTGCATCTT 3748427 Score = 98.7 bits (108), Expect = 1e-15 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || |||||||| |||||||| || || |||| || |||||||| || ||||| Sbjct 7958256 CTCCTTCTGGATATTGTAGTCAGCCAGGGTGCGTCCGTCCTCGAGCTGCTTGCCGGCGAA 7958315 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 ||||| ||||||||||| | || | || |||||||||| ||| | || | || | Sbjct 7958316 GATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCC-TGAATCTTCGCCTTCACAT 7958374 Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | || || || || || || | ||| || || || || || || ||||| | Sbjct 7958375 TGTCGATTGTATCAGAAGACTCGACCTCAAGCGTAATAGTCTTTCCGGTCAGGGTCTTGA 7958434 Query 42196 CAAAGATTTGCAT 42208 |||| || ||||| Sbjct 7958435 CAAAAATCTGCAT 7958447 Score = 98.7 bits (108), Expect = 1e-15 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| ||||| || |||| | || || |||||||| ||||| || Sbjct 22857762 CTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTACCATCCTCGAGCTGCTTGCCAGCAAA 22857703 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||| | || | | |||||||||| || | |||| | | ||| Sbjct 22857702 GATCAGACGCTGCTGGTCCGGGGGAATCCCCTCCTTGTCC-TGGATCTTTGCCTTAACGT 22857644 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | || || || ||||| || | ||||| || ||||| || | ||||| | Sbjct 22857643 TGTCAATGGTATCAGAAGACTCCACCTCAAGGGTGATAGTCTTGCCAGTCAAGGTCTTGA 22857584 Query 42196 CAAAGATTTGCAT 42208 ||||||||||||| Sbjct 22857583 CAAAGATTTGCAT 22857571 Score = 95.1 bits (104), Expect = 1e-14 Identities = 163/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || || | || | |||||| || | || |||||| ||||| ||||| || || Sbjct 22858254 ACCACCCCTGAGGCGGAGCACCAAGTGTAGGGTAGACTCCTTCTGAATGTTGTAGTCGGC 22858195 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || || ||||||||||||||||| ||||||| ||||||||| | || Sbjct 22858194 AAGGGTGCGGCCATCCTCCAGCTGCTTACCAGCGAAGATGAGTCTCTGCTGGTCCGGGGG 22858135 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATT 42156 | || |||||| ||| ||| || || | ||| | | | ||||| |||| | Sbjct 22858134 GATGCCCTCCTTATCCTGGATCTTCGCCTTCA-CGTTGTCGATGGTGTCTGAGCTC---T 22858079 Query 42157 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 | || || | || || || ||||| || || ||||| || || || |||||| Sbjct 22858078 CAACCTCCAAGGTAATAGTCTTGCCAGTGAGAGTCTTGACGAAAATCTGCATT 22858026 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 41980 GACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAG 42039 |||| || || | || | ||||| || | ||| |||||| ||||| ||||| || | Sbjct 22858483 GACCACCCCTGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGG 22858424 Query 42040 CCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTG 42099 | || || || | || || |||||||| |||||||| || || ||||||||||| | | Sbjct 22858423 CGAGGGTACGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCTGGGG 22858364 Query 42100 GCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATT 42156 | | | ||||||||| ||| || || | | | | ||||| |||| | Sbjct 22858363 GAATACCTTCCTTGTCCTGGATCTTAGCCTTCACATTGTCGATGGTGTCGGAGCTC---T 22858307 Query 42157 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || |||| || ||||| ||||| || || ||||| |||||||| ||||| Sbjct 22858306 CAACCTCGAGGGTAATGGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 22858255 >seq2 Length=37273066 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| ||||| || |||| | || || |||||||| ||||| || Sbjct 4567793 CTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCATCCTCCAGCTGCTTGCCAGCAAA 4567852 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| | || | || |||||||||| ||| || |||| | Sbjct 4567853 GATGAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATT 4567912 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | || || || ||||| |||| |||||||| ||||| || || ||||| || Sbjct 4567913 GTCAATGGTATCAGAAGACTCCACCTCGAGGGTGATGGTCTTGCCGGTCAGAGTCTTCAC 4567972 Query 42197 AAAGATTTGCAT 42208 ||||| ||||| Sbjct 4567973 GAAGATCTGCAT 4567984 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| ||||| || |||| |||| || |||||||| || || || Sbjct 4568021 CTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCGTCCTCAAGCTGCTTGCCGGCAAA 4568080 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| | || | || |||||||||| ||| || |||| ||| Sbjct 4568081 AATGAGACGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 4568139 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | ||||| || ||||| || | ||||| || ||||| || || ||||| | Sbjct 4568140 TGTCGATGGTGTCAGAAGACTCCACCTCAAGGGTGATAGTCTTGCCGGTCAGAGTCTTGA 4568199 Query 42196 CAAAGATTTGCAT 42208 | ||||| ||||| Sbjct 4568200 CGAAGATCTGCAT 4568212 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| ||||| || |||| |||| || |||||||| |||||||| Sbjct 4568249 CTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCGTCCTCCAGCTGCTTGCCAGCGAA 4568308 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| | || | || |||||| || ||| || |||| | Sbjct 4568309 AATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTATCTTGGATCTTAGCCTTGACATT 4568368 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | ||||| || ||||| |||| ||||| || ||||| || | ||||| || Sbjct 4568369 ATCAATGGTGTCAGAAGACTCCACCTCGAGGGTGATAGTCTTGCCGGTCAATGTCTTCAC 4568428 Query 42197 AAAGATTTGCAT 42208 |||||| ||||| Sbjct 4568429 AAAGATCTGCAT 4568440 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/213 (69%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 ||||| || | ||| |||||| || || ||||| || ||||| || || | || || Sbjct 4567319 CACCAGGTGGAGCGTGGACTCCTTCTGTATGTTGTAGTCGGCCAGGGTGCGTCCATCCTC 4567378 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 |||||||| |||||||| || || ||||||||||| | || | | |||||||||| Sbjct 4567379 CAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCTGGGGGAATCCCCTCCTTGTCCTG 4567438 Query 42119 GATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGT 42175 ||| || || | | | | ||||| |||| || || || | |||||||| Sbjct 4567439 GATCTTGGCCTTCACATTATCAATGGTGTCGGAGCTC---TCAACCTCCAGAGTGATGGT 4567495 Query 42176 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || || | ||||| || ||||| ||||| Sbjct 4567496 CTTCCCAGTCAAAGTCTTCACGAAGATCTGCAT 4567528 Score = 82.4 bits (90), Expect = 8e-11 Identities = 136/195 (70%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || || || || || | || || |||||||| ||||| || Sbjct 4567565 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAA 4567624 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||| | || | | |||||||||| ||| || || | | Sbjct 4567625 GATCAGACGCTGCTGGTCAGGGGGAATCCCCTCCTTGTCCTGGATCTTGGCCTTCACATT 4567684 Query 42137 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | ||||| |||| || || || | |||||||| || || || || ||||| Sbjct 4567685 GTCGATGGTGTCTGAGCTC---TCAACCTCCAGGGTGATGGTCTTCCCTGTGAGGGTCTT 4567741 Query 42194 TACAAAGATTTGCAT 42208 |||||||| ||||| Sbjct 4567742 GACAAAGATCTGCAT 4567756 >seq4 Length=30391017 Score = 102 bits (112), Expect = 9e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 |||||||| || ||||| || || || || || | || || |||||||| ||||| || Sbjct 26504804 TCCTTTTGGATGTTGTAGTCTGCAAGGGTGCGGCCATCCTCGAGCTGCTTCCCAGCAAAG 26504745 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 ||||| ||||||||||| | ||| | | |||||||||| ||| || || | | Sbjct 26504744 ATGAGACGCTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTA 26504685 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | |||||| ||| || || || | || ||||| ||||| || || ||||| || Sbjct 26504684 TCGATCGTGTCAGACGACTCGACCTCCAGGGTAATGGTCTTGCCGGTGAGGGTCTTCACG 26504625 Query 42198 AAGATTTGCAT 42208 || |||||||| Sbjct 26504624 AATATTTGCAT 26504614 Score = 100 bits (110), Expect = 3e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 42006 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 42065 ||||| ||| |||||| || || || ||||| || ||||| ||| | || || |||||| Sbjct 26504588 TGCAAGGTGGACTCCTTCTGGATGTTATAATCCGCGAGAGTACGCCCATCCTCAAGCTGC 26504529 Query 42066 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTT 42125 |||||||| || || || || |||||||| | || | || |||||||||| ||| | || Sbjct 26504528 TTACCAGCAAAGATAAGGCGTTGCTGGTCCGGAGGGATGCCCTCCTTGTCC-TGAATCTT 26504470 Query 42126 TG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 42184 | || | | | | ||| || || || || || | |||||||| ||||| || Sbjct 26504469 AGCCTTCACATTGTCAATCGTATCAGAGGACTCGACCTCCAAGGTGATGGTCTTGCCAGT 26504410 Query 42185 TAGCGTCTTTACAAAGATTTGCAT 42208 || ||||| || || || ||||| Sbjct 26504409 GAGGGTCTTAACGAATATCTGCAT 26504386 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 42006 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 42065 |||| ||| |||||| || || |||||||| || || || || | || || |||||| Sbjct 26505044 TGCAGGGTGGACTCCTTCTGGATGTTGTAATCTGCAAGGGTGCGACCATCCTCAAGCTGC 26504985 Query 42066 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTT 42125 || || ||||| ||||| ||||||||||| | ||| | | |||||||||| ||| || Sbjct 26504984 TTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGTGGAATACCCTCCTTGTCCTGGATCTTG 26504925 Query 42126 TGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTT 42185 || | | | | |||||| || || || || | ||||| || ||||| || Sbjct 26504924 GCCTTCACATTGTCGATCGTGTCAGAGGACTCAACCTCCAAGGTGATCGTCTTGCCAGTG 26504865 Query 42186 AGCGTCTTTACAAAGATTTGCAT 42208 || ||||| || ||||| ||||| Sbjct 26504864 AGGGTCTTCACGAAGATCTGCAT 26504842 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 42006 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 42065 |||| ||| |||||| || || || || || || || || || | || || |||||| Sbjct 26505272 TGCAGGGTGGACTCCTTCTGGATGTTATAGTCGGCAAGGGTGCGGCCATCCTCGAGCTGC 26505213 Query 42066 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTT 42125 || || ||||| ||||| ||||||||||| | || | || |||||||||| ||| || Sbjct 26505212 TTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGGATGCCCTCCTTGTCCTGGATCTTG 26505153 Query 42126 TGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 42184 || | ||| | | | ||||| || || || || | |||||||| ||||| || Sbjct 26505152 GCCTTCA-CGTTGTCGATGGTGTCAGAGGACTCAACCTCCAGAGTGATGGTCTTGCCAGT 26505094 Query 42185 TAGCGTCTTTACAAAGATTTGCAT 42208 || ||||| || ||||| ||||| Sbjct 26505093 GAGGGTCTTCACGAAGATCTGCAT 26505070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543212718518080