Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq6 100 3e-16 seq5 98.7 1e-15 seq1 98.7 1e-15 seq2 89.7 5e-13 >seq6 Length=31808207 Score = 100 bits (110), Expect = 3e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || ||||||||||| || || || || |||||| || || || |||| | Sbjct 28434783 GACTCTTTCTGAATGTTGTAATCAGCCAGGGTCCGACTGTCCTCAAGCTGCTTGCCGGCA 28434842 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| |||||||| ||||| ||||| || || || ||||| ||| || || | | Sbjct 28434843 AAGATGAGACGCTGCTGGTCAGGAGGGATCCCCTCCTTGTCCTGGATCTTCGCCTTCACA 28434902 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | ||||| | |||||| ||||||| || | || || || |||| || || Sbjct 28434903 TTG-TCGATCGTGTCCGACGACTCGACCTCGAGAGTGATGGTCTTTCCTGTCAAGGTCTT 28434961 Query 138600 TACAAAAATCTGCATGGCT 138618 ||||| ||||||||| || Sbjct 28434962 CACAAAGATCTGCATGCCT 28434980 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| |||||||| || | ||||| ||||| || || ||||| | | Sbjct 29029365 GACTCCTTTTGGATGTTGTAATCCGCAAGGGTACGGCCATCCTCAAGCTGCTTACCAGCA 29029306 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| |||||||| || || || || ||||| ||| || || | Sbjct 29029305 AAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACG 29029246 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| |||||| ||||| | || | || || |||||||| || || Sbjct 29029245 TTGTCAATAGTGTCGGACGACTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTG 29029186 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 29029185 ACGAAGATCTGCAT 29029172 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| || || || |||||| || || || |||| Sbjct 29029137 GACTCCTTCTGGATGTTGTAGTCAGCCAAGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCG 29029078 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| |||||||| || ||||| || ||||| ||| || || | Sbjct 29029077 AAGATGAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTCACG 29029018 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||| | ||||| ||||| | ||| | || || || ||||| || || Sbjct 29029017 TTGTCGATCGTGTCTGAGGACTCGACCTCAAGCGTGATGGTCTTTCCGGTCAGGGTCTTG 29028958 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 29028957 ACGAAGATCTGCAT 29028944 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| || || || ||||| || || || || | Sbjct 29028407 GACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCG 29028348 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| |||||||| |||||||| || || || || ||||| ||| || || | | Sbjct 29028347 AAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACA 29028288 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||| | ||||| ||||| | || | || || || || || || || Sbjct 29028287 TTG-TCAATGGTGTCCGAGGACTCAACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTT 29028229 Query 138600 TACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 29028228 CACAAAGATCTGCAT 29028214 >seq5 Length=26596109 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || || |||||||| || || |||| Sbjct 3748623 GACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCG 3748564 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| |||||||| || || ||||| ||||| ||| || || | Sbjct 3748563 AAGATGAGGCGCTGCTGGTCCGGGGGGATCCCTTCCTTGTCCTGGATCTTGGCCTTCACG 3748504 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | ||||||||||| | ||| | || || || ||||| || || Sbjct 3748503 TTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATGGTCTTCCCCGTCAGGGTCTTC 3748444 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 3748443 ACGAAGATCTGCAT 3748430 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||||||| | ||||| || || || || || || | Sbjct 22858448 GACTCCTTCTGAATGTTGTAGTCGGCGAGGGTACGGCCATCTTCCAGCTGCTTGCCAGCG 22858389 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || ||||| ||||| || || |||||||| ||||| ||| || || | | Sbjct 22858388 AAGATCAGGCGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGGATCTTAGCCTTCACA 22858329 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||||| ||| ||||||| || | || || ||||| ||||| || Sbjct 22858328 TTG-TCGATGGTGTCGGAGCTCTCAACCTCGAGGGTAATGGTCTTGCCAGTGAGAGTCTT 22858270 Query 138600 TACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 22858269 GACAAAGATCTGCAT 22858255 Score = 95.1 bits (104), Expect = 1e-14 Identities = 143/200 (72%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || || |||||||| || || || ||||||||| || || |||| Sbjct 7958254 GACTCCTTCTGGATATTGTAGTCAGCCAGGGTGCGTCCGTCCTCGAGCTGCTTGCCGGCG 7958313 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| || ||||| |||||||| || || || || ||||| ||| | || | || | Sbjct 7958314 AAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCC-TGAATCTTCGCCTTCAC 7958372 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| | | || || | ||||| ||||| | ||| | || || || ||||| || | Sbjct 7958373 ATTGT-CGATTGTATCAGAAGACTCGACCTCAAGCGTAATAGTCTTTCCGGTCAGGGTCT 7958431 Query 138599 TTACAAAAATCTGCATGGCT 138618 | ||||||||||||||| || Sbjct 7958432 TGACAAAAATCTGCATGCCT 7958451 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/200 (71%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | || | |||||||| || || || | | Sbjct 22857764 GACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTACCATCCTCGAGCTGCTTGCCAGCA 22857705 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| |||||||| |||||||| || || || || ||||| ||| ||| | |||| Sbjct 22857704 AAGATCAGACGCTGCTGGTCCGGGGGAATCCCCTCCTTGTCCTGGATCTTT-GCCTTAAC 22857646 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| | | ||| || | ||||||||||| | || | || || ||||||| || | Sbjct 22857645 GTTGT-CAATGGTATCAGAAGACTCCACCTCAAGGGTGATAGTCTTGCCAGTCAAGGTCT 22857587 Query 138599 TTACAAAAATCTGCATGGCT 138618 | ||||| || |||||| || Sbjct 22857586 TGACAAAGATTTGCATGCCT 22857567 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| || ||||||||||| | || ||| || ||||| || || || | Sbjct 22857536 GATTCCTTCTGGATGTTGTAGTCAGCAAGCGTGCGCCCATCTTCGAGCTGCTTGCCAGCG 22857477 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| |||||||| |||||||| || || || || ||||| ||| || |||| | Sbjct 22857476 AAGATGAGACGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTTACA 22857417 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | ||| || | ||||| ||||| | || | || || ||||| ||||| || Sbjct 22857416 TTG-TCAATGGTATCCGAGGACTCAACCTCAAGGGTTATGGTCTTGCCAGTGAGAGTCTT 22857358 Query 138600 TACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 22857357 CACAAAGATCTGCAT 22857343 Score = 82.4 bits (90), Expect = 8e-11 Identities = 138/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || ||||||||||| || | || || |||||| ||||| || || | | Sbjct 7958710 GACTCTTTCTGAATGTTGTAATCTGCGAGGGTGCGTCCGTCCTCAAGTTGCTTGCCCGCA 7958769 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTA 138538 |||| || ||||| ||||| || || ||||| || ||||| ||| | || | || Sbjct 7958770 AAGATGAGGCGCTGCTGGTCAGGTGGAATACCCTCCTTGTC-CTGAATCTTGGCCTTGAC 7958828 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | ||||| | ||||| ||||| | || | || || ||||| || || | Sbjct 7958829 ATTG-TCAATCGTGTCAGAGGACTCAACCTCTAGGGTTATGGTCTTGCCAGTGAGTGTCT 7958887 Query 138599 TTACAAAAATCTGCAT 138614 | ||||| |||||||| Sbjct 7958888 TCACAAAGATCTGCAT 7958903 >seq1 Length=41795227 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || ||| |||||| || || || |||| Sbjct 11039198 GACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCCGTCCTCCAGCTGCTTGCCGGCG 11039257 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| ||||| || || || || || ||||| ||| || || | Sbjct 11039258 AAGATGAGCCGCTGCTGGTCGGGCGGGATCCCCTCCTTGTCCTGGATCTTCGCCTTCACG 11039317 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | ||||||||||| | ||| | ||| || || ||||| || || Sbjct 11039318 TTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATCGTCTTCCCCGTCAGGGTCTTC 11039377 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 11039378 ACGAAGATCTGCAT 11039391 >seq2 Length=37273066 Score = 89.7 bits (98), Expect = 5e-13 Identities = 143/200 (72%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGA 138479 |||||||| || ||||||||||| | || | || | ||||| || || || || | Sbjct 4567791 GACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCA-TCCTCCAGCTGCTTGCCAGC 4567849 Query 138480 ATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA- 138538 | |||| || ||||| |||||||| || || || || ||||| ||| || || | Sbjct 4567850 AAAGATGAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGAC 4567909 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||||| | | ||| || | ||||||||||||| || | || || || |||||||| | Sbjct 4567910 ATTGT-CAATGGTATCAGAAGACTCCACCTCGAGGGTGATGGTCTTGCCGGTCAGAGTCT 4567968 Query 138599 TTACAAAAATCTGCATGGCT 138618 | || || ||||||||| || Sbjct 4567969 TCACGAAGATCTGCATGCCT 4567988 Score = 86.0 bits (94), Expect = 6e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | || | |||||| || || || |||| | Sbjct 4568019 GACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCGTCCTCAAGCTGCTTGCCGGCA 4568078 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 | || |||||||| ||||| || || || || || ||||| ||| || || | Sbjct 4568079 AAAATGAGACGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACG 4568138 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | ||||||||||| | || | || || || |||||||| || Sbjct 4568139 TTGTCGATGGTGTCAGAAGACTCCACCTCAAGGGTGATAGTCTTGCCGGTCAGAGTCTTG 4568198 Query 138601 ACAAAAATCTGCATG 138615 || || ||||||||| Sbjct 4568199 ACGAAGATCTGCATG 4568213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262325560640