Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20meridionalis_20[genbank_20GCA_5F000338895.2_202014-02-27] 12 sequences; 335,668,232 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq6 87.8 2e-12 seq2 87.8 2e-12 seq5 86.0 6e-12 >seq6 Length=31808207 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | |||||| | ||| || || || || || ||||| ||||| || || ||| Sbjct 29028443 ATGCCTCCCCTGAGCCTGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 29028384 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | || || || ||| | || | || ||||||||||| Sbjct 29028383 GCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGG 29028324 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || ||||| || || || || || || |||| || | |||||| || ||||| Sbjct 29028323 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCCGAGGACTCA 29028264 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || || | || |||||||| || || || ||||| || |||||| Sbjct 29028263 ACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCATC 29028213 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | ||| || |||| || || ||||| ||||| || ||||| Sbjct 28434522 CCACCACGGAGGCGGAGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAATCTGCC 28434581 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| ||| || | || || || ||| | ||||| || ||||||||||| ||| Sbjct 28434582 AGGGTGCGTCCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGGGGA 28434641 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 || || || || || || || || || | || | || | || | |||||||| || Sbjct 28434642 ATTCCCTCCTTGTCCTGGATCTTCGCCTTCA-CGTTGTCGATCGTATGAGAAGACTCAAC 28434700 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || |||| || |||||||| || || || |||||||| ||||| Sbjct 28434701 CTCAAGCGTAATGGTCTTGCCGGTCAGGGTCTTGACAAAAATCTGCAT 28434748 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | ||| | | || || || || || || ||||| ||||| || ||||| Sbjct 28434975 ATGCCTCCCCTGAGGCGTAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCC 28435034 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| ||| || | ||| || || || | || | ||||||||||| || Sbjct 28435035 GCGAGGGTGCGGCCATCCTCTAGTTGCTTGCCAGCAAAGATGAGACGTTGCTGGTCAGGT 28435094 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 |||||||| || || |||||||| || || | | || | || || || ||||| Sbjct 28435095 GGAATGCCCTCCTTGTCTTGAATCTTGGCCTTCACATCGTCAATTGTATCAGAGGACTCA 28435154 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| || | || ||||| || || || || ||||| || |||||| Sbjct 28435155 ACCTCGAGGGTGATGGTCTTGCCAGTGAGTGTCTTCACAAAGATCTGCATC 28435205 >seq2 Length=37273066 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | || || || || || || ||||| ||||| || || || Sbjct 4568211 ATGCCACCACGGAGGCGGAGGACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCA 4568270 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | || |||| || || || ||| | || | || ||||||||||| Sbjct 4568271 GCAAGGGTCCTGCCGTCCTCCAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGG 4568330 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || ||||| || |||||||| || || |||| || | |||||| |||||||| Sbjct 4568331 GGGATGCCCTCCTTATCTTGGATCTTAGCCTTGACATTATCAATGGTGTCAGAAGACTCC 4568390 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| || | || |||||||| | || || ||||| || |||||| Sbjct 4568391 ACCTCGAGGGTGATAGTCTTGCCGGTCAATGTCTTCACAAAGATCTGCATC 4568441 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| || || || || || ||||| ||||| || || || | ||| | ||| || Sbjct 4567775 CACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCATCCTC 4567834 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 || || || || || | || | || ||||||||||| |||||||| || || || || Sbjct 4567835 CAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTG 4567894 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 || || |||| || | ||| || |||||||| || ||||| || | || || Sbjct 4567895 GATCTTGGCCTTGACATTGTCAATGGTATCAGAAGACTCCACCTCGAGGGTGATGGTCTT 4567954 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||| ||||| || || || || ||||| Sbjct 4567955 GCCGGTCAGAGTCTTCACGAAGATCTGCAT 4567984 >seq5 Length=26596109 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || | |||||| | |||||| || || | || ||||| |||||||| || || Sbjct 7958218 ATTCCACCCCTGAGCCTGAGCACTAGGTGAAGGATCGACTCCTTCTGGATATTGTAGTCA 7958277 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || || | || || || ||| | || | || ||||||||||| Sbjct 7958278 GCCAGGGTGCGTCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGG 7958337 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || ||||| || || || ||||| || || | || | || || ||||||||| Sbjct 7958338 GGGATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATTGTCGATTGTATCAGAAGACTCG 7958397 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || |||| || || ||||| || || || |||||||| ||||| Sbjct 7958398 ACCTCAAGCGTAATAGTCTTTCCGGTCAGGGTCTTGACAAAAATCTGCAT 7958447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452003132199520